Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:18171177-18691186

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ect2l 10 18128903 to 18210890 81987 - protein coding gene epithelial cell transforming sequence 2 oncogene-like
Tssr96827 10 18210819 to 18210831 12 - TSS region transcription start site region 96827
Ccdc28a 10 18213685 to 18234981 21296 - protein coding gene coiled-coil domain containing 28A
Cpgi1328 10 18213734 to 18214222 488 CpG island CpG island 1328
Tssr96828 10 18227518 to 18227525 7 - TSS region transcription start site region 96828
Cpgi1329 10 18234775 to 18235557 782 CpG island CpG island 1329
Tssr96829 10 18234890 to 18234913 23 - TSS region transcription start site region 96829
Tssr96830 10 18234930 to 18235008 78 - TSS region transcription start site region 96830
Tssr92471 10 18235030 to 18235054 24 + TSS region transcription start site region 92471
Gm10827 10 18235053 to 18246019 10966 + lincRNA gene predicted gene 10827
Tssr96831 10 18235559 to 18235568 9 - TSS region transcription start site region 96831
Tssr3146 10 18235591 to 18235594 3 - TSS region transcription start site region 3146
Tssr96832 10 18235595 to 18235606 11 - TSS region transcription start site region 96832
Tssr92472 10 18251606 to 18251614 8 + TSS region transcription start site region 92472
Gm48229 10 18302669 to 18303062 393 - pseudogene predicted gene, 48229
Cpgi1330 10 18318168 to 18319732 1564 CpG island CpG island 1330
Tssr92473 10 18318597 to 18318622 25 + TSS region transcription start site region 92473
Tssr92474 10 18318633 to 18318725 92 + TSS region transcription start site region 92474
Nhsl1 10 18318985 to 18533892 214907 + protein coding gene NHS-like 1
Gm18942 10 18336121 to 18337241 1120 - pseudogene predicted gene, 18942
Tssr92475 10 18356318 to 18356323 5 + TSS region transcription start site region 92475
Tssr92476 10 18361002 to 18361004 2 + TSS region transcription start site region 92476
D10Mit146.1 10 18383492 to 18383605 113 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 146.1
D10Mit146 10 18383585 to 18383681 96 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 146
D10Mit189 10 18383585 to 18383689 104 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 189
D10Mit167.2 10 18383645 to 18383763 118 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 167.2
Tssr92477 10 18407626 to 18407650 24 + TSS region transcription start site region 92477
Tssr92478 10 18407658 to 18407715 57 + TSS region transcription start site region 92478
Tssr92479 10 18407778 to 18407783 5 + TSS region transcription start site region 92479
Tssr92480 10 18407836 to 18407855 19 + TSS region transcription start site region 92480
Gm38480 10 18414020 to 18423180 9160 + lncRNA gene predicted gene, 38480
Cpgi1331 10 18430924 to 18431233 309 CpG island CpG island 1331
Tssr92481 10 18431177 to 18431186 9 + TSS region transcription start site region 92481
Tssr92482 10 18431205 to 18431238 33 + TSS region transcription start site region 92482
Tssr92483 10 18431243 to 18431265 22 + TSS region transcription start site region 92483
Tssr92484 10 18431267 to 18431282 15 + TSS region transcription start site region 92484
Tssr92485 10 18431292 to 18431304 12 + TSS region transcription start site region 92485
Tssr92486 10 18431457 to 18431463 6 + TSS region transcription start site region 92486
Tssr92487 10 18447325 to 18447329 4 + TSS region transcription start site region 92487
Cpgi1332 10 18463102 to 18463300 198 CpG island CpG island 1332
Tssr92488 10 18469877 to 18469878 1 + TSS region transcription start site region 92488
Tssr92489 10 18469903 to 18469910 7 + TSS region transcription start site region 92489
Tssr92490 10 18469938 to 18469949 11 + TSS region transcription start site region 92490
Tssr92491 10 18469958 to 18469974 16 + TSS region transcription start site region 92491
Tssr92492 10 18475834 to 18475838 4 + TSS region transcription start site region 92492
Tssr92493 10 18508839 to 18508849 10 + TSS region transcription start site region 92493
Tssr92494 10 18525937 to 18525954 17 + TSS region transcription start site region 92494
Tssr92495 10 18526336 to 18526339 3 + TSS region transcription start site region 92495
Cpgi1333 10 18526377 to 18526892 515 CpG island CpG island 1333
Tssr92496 10 18526617 to 18526626 9 + TSS region transcription start site region 92496
Cpgi1334 10 18531310 to 18531958 648 CpG island CpG island 1334
Tssr92497 10 18532704 to 18532708 4 + TSS region transcription start site region 92497
6330590E21Rik 10 18533888 to 18535243 1355 unclassified gene RIKEN cDNA 6330590E21 gene
Hebp2 10 18540123 to 18546076 5953 - protein coding gene heme binding protein 2
Cpgi1335 10 18545732 to 18546133 401 CpG island CpG island 1335
Tssr96833 10 18545771 to 18545778 7 - TSS region transcription start site region 96833
Tssr96834 10 18545793 to 18545806 13 - TSS region transcription start site region 96834
Tssr96835 10 18545847 to 18545858 11 - TSS region transcription start site region 96835
Tssr96836 10 18545880 to 18545931 51 - TSS region transcription start site region 96836
Tssr96837 10 18546016 to 18546030 14 - TSS region transcription start site region 96837
Tssr96838 10 18546049 to 18546084 35 - TSS region transcription start site region 96838
Gm48297 10 18565487 to 18565955 468 - pseudogene predicted gene, 48297
Arfgef3 10 18588011 to 18743758 155747 - protein coding gene ARFGEF family member 3
Tssr96839 10 18604977 to 18604983 6 - TSS region transcription start site region 96839
Tssr92498 10 18613457 to 18613465 8 + TSS region transcription start site region 92498
D10Mit212 10 18631362 to 18631484 122 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 212
Tssr96840 10 18653731 to 18653737 6 - TSS region transcription start site region 96840
Tssr96841 10 18679088 to 18679091 3 - TSS region transcription start site region 96841
Gn 10 118150744 to 18383585 -99767159 heritable phenotypic marker gentoo
Scc9 10 125739363 to 18383585 -107355778 QTL colon tumor susceptibility 9