Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:17554349-18334354

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm32543 10 17512080 to 17680892 168812 - lncRNA gene predicted gene, 32543
Gm47771 10 17562743 to 17658513 95770 - lincRNA gene predicted gene, 47771
Cpgi1323 10 17634045 to 17634276 231 CpG island CpG island 1323
Gm32656 10 17659913 to 17678733 18820 + lncRNA gene predicted gene, 32656
Tssr96812 10 17696574 to 17696578 4 - TSS region transcription start site region 96812
Cpgi1324 10 17722023 to 17724793 2770 CpG island CpG island 1324
Tssr92443 10 17723220 to 17723229 9 + TSS region transcription start site region 92443
Cited2 10 17723228 to 17725674 2446 + protein coding gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
Tssr92444 10 17723973 to 17724011 38 + TSS region transcription start site region 92444
Tssr92445 10 17724025 to 17724045 20 + TSS region transcription start site region 92445
Tssr92446 10 17724180 to 17724193 13 + TSS region transcription start site region 92446
Tssr92447 10 17724211 to 17724230 19 + TSS region transcription start site region 92447
Tssr92448 10 17724259 to 17724276 17 + TSS region transcription start site region 92448
Tssr96813 10 17724307 to 17724352 45 - TSS region transcription start site region 96813
Tssr92449 10 17724308 to 17724341 33 + TSS region transcription start site region 92449
Tssr96814 10 17724353 to 17724366 13 - TSS region transcription start site region 96814
Tssr92450 10 17724643 to 17724678 35 + TSS region transcription start site region 92450
Tssr92451 10 17724683 to 17724695 12 + TSS region transcription start site region 92451
Tssr92452 10 17724774 to 17724810 36 + TSS region transcription start site region 92452
Tssr92453 10 17772734 to 17772741 7 + TSS region transcription start site region 92453
Gm20655 10 17790522 to 17799921 9399 - antisense lncRNA gene predicted gene 20655
Tssr92454 10 17796201 to 17796226 25 + TSS region transcription start site region 92454
Txlnb 10 17796226 to 17845665 49439 + protein coding gene taxilin beta
Tssr92455 10 17796274 to 17796339 65 + TSS region transcription start site region 92455
Tssr96815 10 17799435 to 17799446 11 - TSS region transcription start site region 96815
Tssr92456 10 17802513 to 17802518 5 + TSS region transcription start site region 92456
Gm7584 10 17817379 to 17818315 936 + pseudogene predicted gene 7584
D10Mit50 10 17842565 to 17842708 143 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 50
Igan1 10 17842565 to 29828159 11985594 QTL IgA nephropathy 1
Heca 10 17899040 to 17948067 49027 - protein coding gene hdc homolog, cell cycle regulator
2210037E17Rik 10 17912054 to 17912954 900 unclassified gene RIKEN cDNA 2210037E17 gene
Tssr96816 10 17912445 to 17912448 3 - TSS region transcription start site region 96816
Tssr92457 10 17919276 to 17919285 9 + TSS region transcription start site region 92457
Tssr92458 10 17919311 to 17919314 3 + TSS region transcription start site region 92458
Tssr92459 10 17919315 to 17919318 3 + TSS region transcription start site region 92459
Tssr3144 10 17920028 to 17920031 3 - TSS region transcription start site region 3144
Tssr96817 10 17920037 to 17920042 5 - TSS region transcription start site region 96817
Tssr96818 10 17920051 to 17920056 5 - TSS region transcription start site region 96818
Tssr96819 10 17920093 to 17920096 3 - TSS region transcription start site region 96819
Tssr92460 10 17920189 to 17920205 16 + TSS region transcription start site region 92460
Tssr96820 10 17920194 to 17920209 15 - TSS region transcription start site region 96820
Tssr96821 10 17924417 to 17924419 2 - TSS region transcription start site region 96821
Tssr96822 10 17944349 to 17944354 5 - TSS region transcription start site region 96822
Cpgi1325 10 17947090 to 17948589 1499 CpG island CpG island 1325
Tssr3145 10 17947462 to 17947482 20 + TSS region transcription start site region 3145
Tssr92461 10 17947496 to 17947511 15 + TSS region transcription start site region 92461
Tssr96823 10 17947997 to 17948098 101 - TSS region transcription start site region 96823
Abracl 10 18011260 to 18023252 11992 - protein coding gene ABRA C-terminal like
Gm17711 10 18011268 to 18011505 237 + pseudogene predicted gene, 17711
Cpgi1326 10 18022308 to 18023411 1103 CpG island CpG island 1326
Tssr92462 10 18022964 to 18022969 5 + TSS region transcription start site region 92462
Tssr96824 10 18023122 to 18023225 103 - TSS region transcription start site region 96824
Tssr96825 10 18023229 to 18023265 36 - TSS region transcription start site region 96825
Cpgi1327 10 18054998 to 18056474 1476 CpG island CpG island 1327
Tssr92463 10 18055520 to 18055595 75 + TSS region transcription start site region 92463
Tssr92464 10 18055598 to 18055611 13 + TSS region transcription start site region 92464
Tssr92465 10 18055711 to 18055790 79 + TSS region transcription start site region 92465
Tssr92466 10 18055793 to 18055815 22 + TSS region transcription start site region 92466
Reps1 10 18055861 to 18125155 69294 + protein coding gene RalBP1 associated Eps domain containing protein
Tssr92467 10 18077496 to 18077504 8 + TSS region transcription start site region 92467
Tssr92468 10 18077551 to 18077575 24 + TSS region transcription start site region 92468
Tssr92469 10 18085718 to 18085719 1 + TSS region transcription start site region 92469
Tssr96826 10 18094361 to 18094366 5 - TSS region transcription start site region 96826
Tssr92470 10 18105768 to 18105772 4 + TSS region transcription start site region 92470
Ect2l 10 18128903 to 18210890 81987 - protein coding gene epithelial cell transforming sequence 2 oncogene-like
Tssr96827 10 18210819 to 18210831 12 - TSS region transcription start site region 96827
Ccdc28a 10 18213685 to 18234981 21296 - protein coding gene coiled-coil domain containing 28A
Cpgi1328 10 18213734 to 18214222 488 CpG island CpG island 1328
Tssr96828 10 18227518 to 18227525 7 - TSS region transcription start site region 96828
Cpgi1329 10 18234775 to 18235557 782 CpG island CpG island 1329
Tssr96829 10 18234890 to 18234913 23 - TSS region transcription start site region 96829
Tssr96830 10 18234930 to 18235008 78 - TSS region transcription start site region 96830
Tssr92471 10 18235030 to 18235054 24 + TSS region transcription start site region 92471
Gm10827 10 18235053 to 18246019 10966 + lincRNA gene predicted gene 10827
Tssr96831 10 18235559 to 18235568 9 - TSS region transcription start site region 96831
Tssr3146 10 18235591 to 18235594 3 - TSS region transcription start site region 3146
Tssr96832 10 18235595 to 18235606 11 - TSS region transcription start site region 96832
Tssr92472 10 18251606 to 18251614 8 + TSS region transcription start site region 92472
Gm48229 10 18302669 to 18303062 393 - pseudogene predicted gene, 48229
Cpgi1330 10 18318168 to 18319732 1564 CpG island CpG island 1330
Tssr92473 10 18318597 to 18318622 25 + TSS region transcription start site region 92473
Tssr92474 10 18318633 to 18318725 92 + TSS region transcription start site region 92474
Nhsl1 10 18318985 to 18533892 214907 + protein coding gene NHS-like 1