Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:17475793-18635815

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr92441 10 17476851 to 17476885 34 + TSS region transcription start site region 92441
Tssr92442 10 17476993 to 17477004 11 + TSS region transcription start site region 92442
Tssr96811 10 17495963 to 17495985 22 - TSS region transcription start site region 96811
Gm32543 10 17512080 to 17680892 168812 - lncRNA gene predicted gene, 32543
Gm47769 10 17512114 to 17520608 8494 - lincRNA gene predicted gene, 47769
Gm47768 10 17514730 to 17514944 214 + pseudogene predicted gene, 47768
Gm47770 10 17522613 to 17526914 4301 - lincRNA gene predicted gene, 47770
Gm47771 10 17562743 to 17658513 95770 - lincRNA gene predicted gene, 47771
Cpgi1323 10 17634045 to 17634276 231 CpG island CpG island 1323
Gm32656 10 17659913 to 17678733 18820 + lncRNA gene predicted gene, 32656
Tssr96812 10 17696574 to 17696578 4 - TSS region transcription start site region 96812
Cpgi1324 10 17722023 to 17724793 2770 CpG island CpG island 1324
Tssr92443 10 17723220 to 17723229 9 + TSS region transcription start site region 92443
Cited2 10 17723228 to 17725674 2446 + protein coding gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
Tssr92444 10 17723973 to 17724011 38 + TSS region transcription start site region 92444
Tssr92445 10 17724025 to 17724045 20 + TSS region transcription start site region 92445
Tssr92446 10 17724180 to 17724193 13 + TSS region transcription start site region 92446
Tssr92447 10 17724211 to 17724230 19 + TSS region transcription start site region 92447
Tssr92448 10 17724259 to 17724276 17 + TSS region transcription start site region 92448
Tssr96813 10 17724307 to 17724352 45 - TSS region transcription start site region 96813
Tssr92449 10 17724308 to 17724341 33 + TSS region transcription start site region 92449
Tssr96814 10 17724353 to 17724366 13 - TSS region transcription start site region 96814
Tssr92450 10 17724643 to 17724678 35 + TSS region transcription start site region 92450
Tssr92451 10 17724683 to 17724695 12 + TSS region transcription start site region 92451
Tssr92452 10 17724774 to 17724810 36 + TSS region transcription start site region 92452
Tssr92453 10 17772734 to 17772741 7 + TSS region transcription start site region 92453
Gm20655 10 17790522 to 17799921 9399 - antisense lncRNA gene predicted gene 20655
Tssr92454 10 17796201 to 17796226 25 + TSS region transcription start site region 92454
Txlnb 10 17796226 to 17845665 49439 + protein coding gene taxilin beta
Tssr92455 10 17796274 to 17796339 65 + TSS region transcription start site region 92455
Tssr96815 10 17799435 to 17799446 11 - TSS region transcription start site region 96815
Tssr92456 10 17802513 to 17802518 5 + TSS region transcription start site region 92456
Gm7584 10 17817379 to 17818315 936 + pseudogene predicted gene 7584
D10Mit50 10 17842565 to 17842708 143 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 50
Igan1 10 17842565 to 29828159 11985594 QTL IgA nephropathy 1
Heca 10 17899040 to 17948067 49027 - protein coding gene hdc homolog, cell cycle regulator
2210037E17Rik 10 17912054 to 17912954 900 unclassified gene RIKEN cDNA 2210037E17 gene
Tssr96816 10 17912445 to 17912448 3 - TSS region transcription start site region 96816
Tssr92457 10 17919276 to 17919285 9 + TSS region transcription start site region 92457
Tssr92458 10 17919311 to 17919314 3 + TSS region transcription start site region 92458
Tssr92459 10 17919315 to 17919318 3 + TSS region transcription start site region 92459
Tssr3144 10 17920028 to 17920031 3 - TSS region transcription start site region 3144
Tssr96817 10 17920037 to 17920042 5 - TSS region transcription start site region 96817
Tssr96818 10 17920051 to 17920056 5 - TSS region transcription start site region 96818
Tssr96819 10 17920093 to 17920096 3 - TSS region transcription start site region 96819
Tssr92460 10 17920189 to 17920205 16 + TSS region transcription start site region 92460
Tssr96820 10 17920194 to 17920209 15 - TSS region transcription start site region 96820
Tssr96821 10 17924417 to 17924419 2 - TSS region transcription start site region 96821
Tssr96822 10 17944349 to 17944354 5 - TSS region transcription start site region 96822
Cpgi1325 10 17947090 to 17948589 1499 CpG island CpG island 1325
Tssr3145 10 17947462 to 17947482 20 + TSS region transcription start site region 3145
Tssr92461 10 17947496 to 17947511 15 + TSS region transcription start site region 92461
Tssr96823 10 17947997 to 17948098 101 - TSS region transcription start site region 96823
Abracl 10 18011260 to 18023252 11992 - protein coding gene ABRA C-terminal like
Gm17711 10 18011268 to 18011505 237 + pseudogene predicted gene, 17711
Cpgi1326 10 18022308 to 18023411 1103 CpG island CpG island 1326
Tssr92462 10 18022964 to 18022969 5 + TSS region transcription start site region 92462
Tssr96824 10 18023122 to 18023225 103 - TSS region transcription start site region 96824
Tssr96825 10 18023229 to 18023265 36 - TSS region transcription start site region 96825
Cpgi1327 10 18054998 to 18056474 1476 CpG island CpG island 1327
Tssr92463 10 18055520 to 18055595 75 + TSS region transcription start site region 92463
Tssr92464 10 18055598 to 18055611 13 + TSS region transcription start site region 92464
Tssr92465 10 18055711 to 18055790 79 + TSS region transcription start site region 92465
Tssr92466 10 18055793 to 18055815 22 + TSS region transcription start site region 92466
Reps1 10 18055861 to 18125155 69294 + protein coding gene RalBP1 associated Eps domain containing protein
Tssr92467 10 18077496 to 18077504 8 + TSS region transcription start site region 92467
Tssr92468 10 18077551 to 18077575 24 + TSS region transcription start site region 92468
Tssr92469 10 18085718 to 18085719 1 + TSS region transcription start site region 92469
Tssr96826 10 18094361 to 18094366 5 - TSS region transcription start site region 96826
Tssr92470 10 18105768 to 18105772 4 + TSS region transcription start site region 92470
Ect2l 10 18128903 to 18210890 81987 - protein coding gene epithelial cell transforming sequence 2 oncogene-like
Tssr96827 10 18210819 to 18210831 12 - TSS region transcription start site region 96827
Ccdc28a 10 18213685 to 18234981 21296 - protein coding gene coiled-coil domain containing 28A
Cpgi1328 10 18213734 to 18214222 488 CpG island CpG island 1328
Tssr96828 10 18227518 to 18227525 7 - TSS region transcription start site region 96828
Cpgi1329 10 18234775 to 18235557 782 CpG island CpG island 1329
Tssr96829 10 18234890 to 18234913 23 - TSS region transcription start site region 96829
Tssr96830 10 18234930 to 18235008 78 - TSS region transcription start site region 96830
Tssr92471 10 18235030 to 18235054 24 + TSS region transcription start site region 92471
Gm10827 10 18235053 to 18246019 10966 + lincRNA gene predicted gene 10827
Tssr96831 10 18235559 to 18235568 9 - TSS region transcription start site region 96831
Tssr3146 10 18235591 to 18235594 3 - TSS region transcription start site region 3146
Tssr96832 10 18235595 to 18235606 11 - TSS region transcription start site region 96832
Tssr92472 10 18251606 to 18251614 8 + TSS region transcription start site region 92472
Gm48229 10 18302669 to 18303062 393 - pseudogene predicted gene, 48229
Cpgi1330 10 18318168 to 18319732 1564 CpG island CpG island 1330
Tssr92473 10 18318597 to 18318622 25 + TSS region transcription start site region 92473
Tssr92474 10 18318633 to 18318725 92 + TSS region transcription start site region 92474
Nhsl1 10 18318985 to 18533892 214907 + protein coding gene NHS-like 1
Gm18942 10 18336121 to 18337241 1120 - pseudogene predicted gene, 18942
Tssr92475 10 18356318 to 18356323 5 + TSS region transcription start site region 92475
Tssr92476 10 18361002 to 18361004 2 + TSS region transcription start site region 92476
D10Mit146.1 10 18383492 to 18383605 113 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 146.1
D10Mit146 10 18383585 to 18383681 96 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 146
D10Mit189 10 18383585 to 18383689 104 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 189
D10Mit167.2 10 18383645 to 18383763 118 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 167.2
Tssr92477 10 18407626 to 18407650 24 + TSS region transcription start site region 92477
Tssr92478 10 18407658 to 18407715 57 + TSS region transcription start site region 92478
Tssr92479 10 18407778 to 18407783 5 + TSS region transcription start site region 92479
Tssr92480 10 18407836 to 18407855 19 + TSS region transcription start site region 92480
Gm38480 10 18414020 to 18423180 9160 + lncRNA gene predicted gene, 38480
Cpgi1331 10 18430924 to 18431233 309 CpG island CpG island 1331
Tssr92481 10 18431177 to 18431186 9 + TSS region transcription start site region 92481
Tssr92482 10 18431205 to 18431238 33 + TSS region transcription start site region 92482
Tssr92483 10 18431243 to 18431265 22 + TSS region transcription start site region 92483
Tssr92484 10 18431267 to 18431282 15 + TSS region transcription start site region 92484
Tssr92485 10 18431292 to 18431304 12 + TSS region transcription start site region 92485
Tssr92486 10 18431457 to 18431463 6 + TSS region transcription start site region 92486
Tssr92487 10 18447325 to 18447329 4 + TSS region transcription start site region 92487
Cpgi1332 10 18463102 to 18463300 198 CpG island CpG island 1332
Tssr92488 10 18469877 to 18469878 1 + TSS region transcription start site region 92488
Tssr92489 10 18469903 to 18469910 7 + TSS region transcription start site region 92489
Tssr92490 10 18469938 to 18469949 11 + TSS region transcription start site region 92490
Tssr92491 10 18469958 to 18469974 16 + TSS region transcription start site region 92491
Tssr92492 10 18475834 to 18475838 4 + TSS region transcription start site region 92492
Tssr92493 10 18508839 to 18508849 10 + TSS region transcription start site region 92493
Tssr92494 10 18525937 to 18525954 17 + TSS region transcription start site region 92494
Tssr92495 10 18526336 to 18526339 3 + TSS region transcription start site region 92495
Cpgi1333 10 18526377 to 18526892 515 CpG island CpG island 1333
Tssr92496 10 18526617 to 18526626 9 + TSS region transcription start site region 92496
Cpgi1334 10 18531310 to 18531958 648 CpG island CpG island 1334
Tssr92497 10 18532704 to 18532708 4 + TSS region transcription start site region 92497
6330590E21Rik 10 18533888 to 18535243 1355 unclassified gene RIKEN cDNA 6330590E21 gene
Hebp2 10 18540123 to 18546076 5953 - protein coding gene heme binding protein 2
Cpgi1335 10 18545732 to 18546133 401 CpG island CpG island 1335
Tssr96833 10 18545771 to 18545778 7 - TSS region transcription start site region 96833
Tssr96834 10 18545793 to 18545806 13 - TSS region transcription start site region 96834
Tssr96835 10 18545847 to 18545858 11 - TSS region transcription start site region 96835
Tssr96836 10 18545880 to 18545931 51 - TSS region transcription start site region 96836
Tssr96837 10 18546016 to 18546030 14 - TSS region transcription start site region 96837
Tssr96838 10 18546049 to 18546084 35 - TSS region transcription start site region 96838
Gm48297 10 18565487 to 18565955 468 - pseudogene predicted gene, 48297
Arfgef3 10 18588011 to 18743758 155747 - protein coding gene ARFGEF family member 3
Tssr96839 10 18604977 to 18604983 6 - TSS region transcription start site region 96839
Tssr92498 10 18613457 to 18613465 8 + TSS region transcription start site region 92498
D10Mit212 10 18631362 to 18631484 122 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 212
Gn 10 118150744 to 18383585 -99767159 heritable phenotypic marker gentoo
Scc9 10 125739363 to 18383585 -107355778 QTL colon tumor susceptibility 9