Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:13980644-15110677

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hivep2 10 13966075 to 14151374 185299 + protein coding gene human immunodeficiency virus type I enhancer binding protein 2
Gm26835 10 13967024 to 14007405 40381 - lincRNA gene predicted gene, 26835
A230061C15Rik 10 13975160 to 13982178 7018 unclassified gene RIKEN cDNA A230061C15 gene
Cpgi1319 10 13982755 to 13983173 418 CpG island CpG island 1319
Tssr92424 10 13983109 to 13983130 21 + TSS region transcription start site region 92424
Tssr3142 10 13983774 to 13983789 15 - TSS region transcription start site region 3142
Tssr92425 10 13993815 to 13993828 13 + TSS region transcription start site region 92425
Tssr92426 10 14017946 to 14017969 23 + TSS region transcription start site region 92426
Tssr92427 10 14046119 to 14046123 4 + TSS region transcription start site region 92427
Tssr92428 10 14046175 to 14046182 7 + TSS region transcription start site region 92428
Tssr92429 10 14048268 to 14048269 1 + TSS region transcription start site region 92429
Tssr96791 10 14059700 to 14059708 8 - TSS region transcription start site region 96791
Tssr92430 10 14073864 to 14073866 2 + TSS region transcription start site region 92430
A130067G02Rik 10 14082837 to 14085427 2590 unclassified gene RIKEN cDNA A130067G02 gene
Tssr92431 10 14086027 to 14086045 18 + TSS region transcription start site region 92431
Tssr92432 10 14087863 to 14087869 6 + TSS region transcription start site region 92432
Tssr92433 10 14088743 to 14088756 13 + TSS region transcription start site region 92433
D10Mit206 10 14105840 to 14105980 140 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 206
Tssr92434 10 14108825 to 14108830 5 + TSS region transcription start site region 92434
Tssr92435 10 14117515 to 14117520 5 + TSS region transcription start site region 92435
Tssr92436 10 14134357 to 14134362 5 + TSS region transcription start site region 92436
Gm28289 10 14149084 to 14154446 5362 - antisense lncRNA gene predicted gene 28289
Gm48843 10 14197015 to 14206821 9806 + lincRNA gene predicted gene, 48843
D10Mit248 10 14219299 to 14219439 140 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 248
Gm48845 10 14226489 to 14266790 40301 + lincRNA gene predicted gene, 48845
Gm48844 10 14226667 to 14233958 7291 - lincRNA gene predicted gene, 48844
Gm24343 10 14233513 to 14233623 110 + snoRNA gene predicted gene, 24343
Gm37299 10 14313908 to 14314733 825 + unclassified gene predicted gene, 37299
Gm40603 10 14322431 to 14324480 2049 + lincRNA gene predicted gene, 40603
Gm48854 10 14327411 to 14336615 9204 + lincRNA gene predicted gene, 48854
Tssr92437 10 14391095 to 14391096 1 + TSS region transcription start site region 92437
Adgrg6 10 14402583 to 14545659 143076 - protein coding gene adhesion G protein-coupled receptor G6
Facq1 10 14403386 to 14403386 0 QTL fear acquisition QTL 1
Tssr92438 10 14523063 to 14523065 2 + TSS region transcription start site region 92438
Gm10335 10 14523078 to 14523545 467 + pseudogene predicted gene 10335
Cpgi1320 10 14544735 to 14545704 969 CpG island CpG island 1320
Tssr96792 10 14544972 to 14545013 41 - TSS region transcription start site region 96792
Tssr96793 10 14545178 to 14545193 15 - TSS region transcription start site region 96793
Tssr96794 10 14545196 to 14545205 9 - TSS region transcription start site region 96794
Tssr96795 10 14545206 to 14545225 19 - TSS region transcription start site region 96795
Gm46212 10 14545265 to 14551359 6094 + antisense lncRNA gene predicted gene, 46212
Tssr96796 10 14545316 to 14545344 28 - TSS region transcription start site region 96796
Tssr96797 10 14545357 to 14545368 11 - TSS region transcription start site region 96797
Tssr96798 10 14545386 to 14545418 32 - TSS region transcription start site region 96798
Tssr96799 10 14545423 to 14545486 63 - TSS region transcription start site region 96799
Tssr96800 10 14545644 to 14545677 33 - TSS region transcription start site region 96800
Tssr96801 10 14546287 to 14546298 11 - TSS region transcription start site region 96801
D10Mit84 10 14558589 to 14558720 131 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 84
Gm48068 10 14586936 to 14587502 566 + pseudogene predicted gene, 48068
Tssr3143 10 14596544 to 14596548 4 + TSS region transcription start site region 3143
Vta1 10 14654760 to 14705523 50763 - protein coding gene vesicle (multivesicular body) trafficking 1
9030203C11Rik 10 14656734 to 14660521 3787 unclassified non-coding RNA gene RIKEN cDNA 9030203C11 gene
Gm16234 10 14664220 to 14668318 4098 + antisense lncRNA gene predicted gene 16234
Cpgi1321 10 14705138 to 14705692 554 CpG island CpG island 1321
Tssr96802 10 14705459 to 14705515 56 - TSS region transcription start site region 96802
Tssr92439 10 14705581 to 14705595 14 + TSS region transcription start site region 92439
1700016L04Rik 10 14705609 to 14759019 53410 + lncRNA gene RIKEN cDNA 1700016L04 gene
Gje1 10 14715626 to 14718214 2588 - protein coding gene gap junction protein, epsilon 1
Tssr96803 10 14718191 to 14718228 37 - TSS region transcription start site region 96803
Gm8355 10 14745362 to 14747302 1940 - pseudogene predicted pseudogene 8355
Tssr96804 10 14747381 to 14747383 2 - TSS region transcription start site region 96804
B230364G03Rik 10 14758635 to 14760720 2085 - antisense lncRNA gene RIKEN cDNA B230364G03 gene
Cpgi1322 10 14760090 to 14760596 506 CpG island CpG island 1322
Nmbr 10 14760289 to 14770556 10267 + protein coding gene neuromedin B receptor
Gm47698 10 14771940 to 14774519 2579 + lincRNA gene predicted gene, 47698
Gm47699 10 14931860 to 14932489 629 + pseudogene predicted gene, 47699
Gm23892 10 14984670 to 14984799 129 + snoRNA gene predicted gene, 23892
D10Mit188 10 14996774 to 14996910 136 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 188