Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:13943063-15103065

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi1318 10 13964543 to 13968206 3663 CpG island CpG island 1318
Tssr92402 10 13964626 to 13964647 21 + TSS region transcription start site region 92402
Tssr92403 10 13964796 to 13964814 18 + TSS region transcription start site region 92403
Tssr92404 10 13964827 to 13964847 20 + TSS region transcription start site region 92404
Tssr92405 10 13964849 to 13964875 26 + TSS region transcription start site region 92405
Tssr92406 10 13965014 to 13965043 29 + TSS region transcription start site region 92406
Tssr92407 10 13965239 to 13965248 9 + TSS region transcription start site region 92407
Tssr92408 10 13965258 to 13965279 21 + TSS region transcription start site region 92408
Tssr92409 10 13965290 to 13965312 22 + TSS region transcription start site region 92409
Tssr92410 10 13965328 to 13965339 11 + TSS region transcription start site region 92410
Tssr96784 10 13965644 to 13965650 6 - TSS region transcription start site region 96784
Tssr96785 10 13965662 to 13965675 13 - TSS region transcription start site region 96785
2900084C01Rik 10 13965773 to 13965974 201 unclassified gene RIKEN cDNA 2900084C01 gene
Tssr92411 10 13965779 to 13965839 60 + TSS region transcription start site region 92411
Tssr92412 10 13965851 to 13965871 20 + TSS region transcription start site region 92412
Tssr92413 10 13965883 to 13965892 9 + TSS region transcription start site region 92413
Hivep2 10 13966075 to 14151374 185299 + protein coding gene human immunodeficiency virus type I enhancer binding protein 2
Tssr92414 10 13966093 to 13966110 17 + TSS region transcription start site region 92414
Tssr3141 10 13966111 to 13966114 3 + TSS region transcription start site region 3141
Tssr92415 10 13966174 to 13966201 27 + TSS region transcription start site region 92415
Tssr92416 10 13966206 to 13966222 16 + TSS region transcription start site region 92416
Tssr92417 10 13966239 to 13966244 5 + TSS region transcription start site region 92417
Tssr92418 10 13966268 to 13966284 16 + TSS region transcription start site region 92418
Tssr96786 10 13966750 to 13966763 13 - TSS region transcription start site region 96786
Tssr96787 10 13966780 to 13966788 8 - TSS region transcription start site region 96787
Tssr96788 10 13966821 to 13966871 50 - TSS region transcription start site region 96788
Tssr92419 10 13966977 to 13967008 31 + TSS region transcription start site region 92419
Tssr92420 10 13967009 to 13967040 31 + TSS region transcription start site region 92420
Gm26835 10 13967024 to 14007405 40381 - lincRNA gene predicted gene, 26835
Tssr92421 10 13967134 to 13967200 66 + TSS region transcription start site region 92421
Tssr96789 10 13967476 to 13967500 24 - TSS region transcription start site region 96789
Tssr96790 10 13967633 to 13967650 17 - TSS region transcription start site region 96790
Tssr92422 10 13967821 to 13967841 20 + TSS region transcription start site region 92422
A230061C15Rik 10 13975160 to 13982178 7018 unclassified gene RIKEN cDNA A230061C15 gene
Tssr92423 10 13975841 to 13975842 1 + TSS region transcription start site region 92423
Cpgi1319 10 13982755 to 13983173 418 CpG island CpG island 1319
Tssr92424 10 13983109 to 13983130 21 + TSS region transcription start site region 92424
Tssr3142 10 13983774 to 13983789 15 - TSS region transcription start site region 3142
Tssr92425 10 13993815 to 13993828 13 + TSS region transcription start site region 92425
Tssr92426 10 14017946 to 14017969 23 + TSS region transcription start site region 92426
Tssr92427 10 14046119 to 14046123 4 + TSS region transcription start site region 92427
Tssr92428 10 14046175 to 14046182 7 + TSS region transcription start site region 92428
Tssr92429 10 14048268 to 14048269 1 + TSS region transcription start site region 92429
Tssr96791 10 14059700 to 14059708 8 - TSS region transcription start site region 96791
Tssr92430 10 14073864 to 14073866 2 + TSS region transcription start site region 92430
A130067G02Rik 10 14082837 to 14085427 2590 unclassified gene RIKEN cDNA A130067G02 gene
Tssr92431 10 14086027 to 14086045 18 + TSS region transcription start site region 92431
Tssr92432 10 14087863 to 14087869 6 + TSS region transcription start site region 92432
Tssr92433 10 14088743 to 14088756 13 + TSS region transcription start site region 92433
D10Mit206 10 14105840 to 14105980 140 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 206
Tssr92434 10 14108825 to 14108830 5 + TSS region transcription start site region 92434
Tssr92435 10 14117515 to 14117520 5 + TSS region transcription start site region 92435
Tssr92436 10 14134357 to 14134362 5 + TSS region transcription start site region 92436
Gm28289 10 14149084 to 14154446 5362 - antisense lncRNA gene predicted gene 28289
Gm48843 10 14197015 to 14206821 9806 + lincRNA gene predicted gene, 48843
D10Mit248 10 14219299 to 14219439 140 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 248
Gm48845 10 14226489 to 14266790 40301 + lincRNA gene predicted gene, 48845
Gm48844 10 14226667 to 14233958 7291 - lincRNA gene predicted gene, 48844
Gm24343 10 14233513 to 14233623 110 + snoRNA gene predicted gene, 24343
Gm37299 10 14313908 to 14314733 825 + unclassified gene predicted gene, 37299
Gm40603 10 14322431 to 14324480 2049 + lincRNA gene predicted gene, 40603
Gm48854 10 14327411 to 14336615 9204 + lincRNA gene predicted gene, 48854
Tssr92437 10 14391095 to 14391096 1 + TSS region transcription start site region 92437
Adgrg6 10 14402583 to 14545659 143076 - protein coding gene adhesion G protein-coupled receptor G6
Facq1 10 14403386 to 14403386 0 QTL fear acquisition QTL 1
Tssr92438 10 14523063 to 14523065 2 + TSS region transcription start site region 92438
Gm10335 10 14523078 to 14523545 467 + pseudogene predicted gene 10335
Cpgi1320 10 14544735 to 14545704 969 CpG island CpG island 1320
Tssr96792 10 14544972 to 14545013 41 - TSS region transcription start site region 96792
Tssr96793 10 14545178 to 14545193 15 - TSS region transcription start site region 96793
Tssr96794 10 14545196 to 14545205 9 - TSS region transcription start site region 96794
Tssr96795 10 14545206 to 14545225 19 - TSS region transcription start site region 96795
Gm46212 10 14545265 to 14551359 6094 + antisense lncRNA gene predicted gene, 46212
Tssr96796 10 14545316 to 14545344 28 - TSS region transcription start site region 96796
Tssr96797 10 14545357 to 14545368 11 - TSS region transcription start site region 96797
Tssr96798 10 14545386 to 14545418 32 - TSS region transcription start site region 96798
Tssr96799 10 14545423 to 14545486 63 - TSS region transcription start site region 96799
Tssr96800 10 14545644 to 14545677 33 - TSS region transcription start site region 96800
Tssr96801 10 14546287 to 14546298 11 - TSS region transcription start site region 96801
D10Mit84 10 14558589 to 14558720 131 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 84
Gm48068 10 14586936 to 14587502 566 + pseudogene predicted gene, 48068
Tssr3143 10 14596544 to 14596548 4 + TSS region transcription start site region 3143
Vta1 10 14654760 to 14705523 50763 - protein coding gene vesicle (multivesicular body) trafficking 1
9030203C11Rik 10 14656734 to 14660521 3787 unclassified non-coding RNA gene RIKEN cDNA 9030203C11 gene
Gm16234 10 14664220 to 14668318 4098 + antisense lncRNA gene predicted gene 16234
Cpgi1321 10 14705138 to 14705692 554 CpG island CpG island 1321
Tssr96802 10 14705459 to 14705515 56 - TSS region transcription start site region 96802
Tssr92439 10 14705581 to 14705595 14 + TSS region transcription start site region 92439
1700016L04Rik 10 14705609 to 14759019 53410 + lncRNA gene RIKEN cDNA 1700016L04 gene
Gje1 10 14715626 to 14718214 2588 - protein coding gene gap junction protein, epsilon 1
Tssr96803 10 14718191 to 14718228 37 - TSS region transcription start site region 96803
Gm8355 10 14745362 to 14747302 1940 - pseudogene predicted pseudogene 8355
Tssr96804 10 14747381 to 14747383 2 - TSS region transcription start site region 96804
B230364G03Rik 10 14758635 to 14760720 2085 - antisense lncRNA gene RIKEN cDNA B230364G03 gene
Cpgi1322 10 14760090 to 14760596 506 CpG island CpG island 1322
Nmbr 10 14760289 to 14770556 10267 + protein coding gene neuromedin B receptor
Gm47698 10 14771940 to 14774519 2579 + lincRNA gene predicted gene, 47698
Gm47699 10 14931860 to 14932489 629 + pseudogene predicted gene, 47699
Gm23892 10 14984670 to 14984799 129 + snoRNA gene predicted gene, 23892
D10Mit188 10 14996774 to 14996910 136 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 188