Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:13685840-14525980

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aig1 10 13647054 to 13868980 221926 - protein coding gene androgen-induced 1
6430706H07Rik 10 13687205 to 13689806 2601 unclassified gene RIKEN cDNA 6430706H07 gene
Cpgi1316 10 13739998 to 13740173 175 CpG island CpG island 1316
Tssr96778 10 13832621 to 13832659 38 - TSS region transcription start site region 96778
Tssr96779 10 13832678 to 13832707 29 - TSS region transcription start site region 96779
Tssr96780 10 13832735 to 13832748 13 - TSS region transcription start site region 96780
Tssr92401 10 13832794 to 13832800 6 + TSS region transcription start site region 92401
Cpgi1317 10 13868236 to 13869225 989 CpG island CpG island 1317
Tssr3140 10 13868756 to 13868776 20 - TSS region transcription start site region 3140
Tssr96781 10 13868779 to 13868874 95 - TSS region transcription start site region 96781
Tssr96782 10 13868932 to 13869004 72 - TSS region transcription start site region 96782
Tssr96783 10 13869750 to 13869781 31 - TSS region transcription start site region 96783
Gm32172 10 13871280 to 13879208 7928 + lincRNA gene predicted gene, 32172
Gm32105 10 13878048 to 13883265 5217 - lincRNA gene predicted gene, 32105
Gm22995 10 13888537 to 13888643 106 - snRNA gene predicted gene, 22995
Gm8330 10 13890646 to 13891653 1007 - pseudogene predicted gene 8330
4930444K16Rik 10 13927198 to 13928964 1766 - unclassified gene RIKEN cDNA 4930444K16 gene
Cpgi1318 10 13964543 to 13968206 3663 CpG island CpG island 1318
Tssr92402 10 13964626 to 13964647 21 + TSS region transcription start site region 92402
Tssr92403 10 13964796 to 13964814 18 + TSS region transcription start site region 92403
Tssr92404 10 13964827 to 13964847 20 + TSS region transcription start site region 92404
Tssr92405 10 13964849 to 13964875 26 + TSS region transcription start site region 92405
Tssr92406 10 13965014 to 13965043 29 + TSS region transcription start site region 92406
Tssr92407 10 13965239 to 13965248 9 + TSS region transcription start site region 92407
Tssr92408 10 13965258 to 13965279 21 + TSS region transcription start site region 92408
Tssr92409 10 13965290 to 13965312 22 + TSS region transcription start site region 92409
Tssr92410 10 13965328 to 13965339 11 + TSS region transcription start site region 92410
Tssr96784 10 13965644 to 13965650 6 - TSS region transcription start site region 96784
Tssr96785 10 13965662 to 13965675 13 - TSS region transcription start site region 96785
2900084C01Rik 10 13965773 to 13965974 201 unclassified gene RIKEN cDNA 2900084C01 gene
Tssr92411 10 13965779 to 13965839 60 + TSS region transcription start site region 92411
Tssr92412 10 13965851 to 13965871 20 + TSS region transcription start site region 92412
Tssr92413 10 13965883 to 13965892 9 + TSS region transcription start site region 92413
Hivep2 10 13966075 to 14151374 185299 + protein coding gene human immunodeficiency virus type I enhancer binding protein 2
Tssr92414 10 13966093 to 13966110 17 + TSS region transcription start site region 92414
Tssr3141 10 13966111 to 13966114 3 + TSS region transcription start site region 3141
Tssr92415 10 13966174 to 13966201 27 + TSS region transcription start site region 92415
Tssr92416 10 13966206 to 13966222 16 + TSS region transcription start site region 92416
Tssr92417 10 13966239 to 13966244 5 + TSS region transcription start site region 92417
Tssr92418 10 13966268 to 13966284 16 + TSS region transcription start site region 92418
Tssr96786 10 13966750 to 13966763 13 - TSS region transcription start site region 96786
Tssr96787 10 13966780 to 13966788 8 - TSS region transcription start site region 96787
Tssr96788 10 13966821 to 13966871 50 - TSS region transcription start site region 96788
Tssr92419 10 13966977 to 13967008 31 + TSS region transcription start site region 92419
Tssr92420 10 13967009 to 13967040 31 + TSS region transcription start site region 92420
Gm26835 10 13967024 to 14007405 40381 - lincRNA gene predicted gene, 26835
Tssr92421 10 13967134 to 13967200 66 + TSS region transcription start site region 92421
Tssr96789 10 13967476 to 13967500 24 - TSS region transcription start site region 96789
Tssr96790 10 13967633 to 13967650 17 - TSS region transcription start site region 96790
Tssr92422 10 13967821 to 13967841 20 + TSS region transcription start site region 92422
A230061C15Rik 10 13975160 to 13982178 7018 unclassified gene RIKEN cDNA A230061C15 gene
Tssr92423 10 13975841 to 13975842 1 + TSS region transcription start site region 92423
Cpgi1319 10 13982755 to 13983173 418 CpG island CpG island 1319
Tssr92424 10 13983109 to 13983130 21 + TSS region transcription start site region 92424
Tssr3142 10 13983774 to 13983789 15 - TSS region transcription start site region 3142
Tssr92425 10 13993815 to 13993828 13 + TSS region transcription start site region 92425
Tssr92426 10 14017946 to 14017969 23 + TSS region transcription start site region 92426
Tssr92427 10 14046119 to 14046123 4 + TSS region transcription start site region 92427
Tssr92428 10 14046175 to 14046182 7 + TSS region transcription start site region 92428
Tssr92429 10 14048268 to 14048269 1 + TSS region transcription start site region 92429
Tssr96791 10 14059700 to 14059708 8 - TSS region transcription start site region 96791
Tssr92430 10 14073864 to 14073866 2 + TSS region transcription start site region 92430
A130067G02Rik 10 14082837 to 14085427 2590 unclassified gene RIKEN cDNA A130067G02 gene
Tssr92431 10 14086027 to 14086045 18 + TSS region transcription start site region 92431
Tssr92432 10 14087863 to 14087869 6 + TSS region transcription start site region 92432
Tssr92433 10 14088743 to 14088756 13 + TSS region transcription start site region 92433
D10Mit206 10 14105840 to 14105980 140 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 206
Tssr92434 10 14108825 to 14108830 5 + TSS region transcription start site region 92434
Tssr92435 10 14117515 to 14117520 5 + TSS region transcription start site region 92435
Tssr92436 10 14134357 to 14134362 5 + TSS region transcription start site region 92436
Gm28289 10 14149084 to 14154446 5362 - antisense lncRNA gene predicted gene 28289
Gm48843 10 14197015 to 14206821 9806 + lincRNA gene predicted gene, 48843
D10Mit248 10 14219299 to 14219439 140 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 248
Gm48845 10 14226489 to 14266790 40301 + lincRNA gene predicted gene, 48845
Gm48844 10 14226667 to 14233958 7291 - lincRNA gene predicted gene, 48844
Gm24343 10 14233513 to 14233623 110 + snoRNA gene predicted gene, 24343
Gm37299 10 14313908 to 14314733 825 + unclassified gene predicted gene, 37299
Gm40603 10 14322431 to 14324480 2049 + lincRNA gene predicted gene, 40603
Gm48854 10 14327411 to 14336615 9204 + lincRNA gene predicted gene, 48854
Tssr92437 10 14391095 to 14391096 1 + TSS region transcription start site region 92437
Adgrg6 10 14402583 to 14545659 143076 - protein coding gene adhesion G protein-coupled receptor G6
Facq1 10 14403386 to 14403386 0 QTL fear acquisition QTL 1
Tssr92438 10 14523063 to 14523065 2 + TSS region transcription start site region 92438
Gm10335 10 14523078 to 14523545 467 + pseudogene predicted gene 10335