Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:12963472-13984773

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stx11 10 12939983 to 12964498 24515 - protein coding gene syntaxin 11
Tssr92371 10 12963519 to 12963523 4 + TSS region transcription start site region 92371
Tssr96735 10 12963865 to 12963873 8 - TSS region transcription start site region 96735
Cpgi1304 10 12963936 to 12964850 914 CpG island CpG island 1304
Tssr96736 10 12964211 to 12964245 34 - TSS region transcription start site region 96736
Tssr96737 10 12964252 to 12964278 26 - TSS region transcription start site region 96737
Tssr96738 10 12964441 to 12964472 31 - TSS region transcription start site region 96738
Tssr96739 10 12964488 to 12964515 27 - TSS region transcription start site region 96739
Tssr96740 10 12974682 to 12974709 27 - TSS region transcription start site region 96740
Tssr92372 10 12974805 to 12974819 14 + TSS region transcription start site region 92372
Tssr96741 10 12975595 to 12975604 9 - TSS region transcription start site region 96741
Tssr92373 10 12975703 to 12975714 11 + TSS region transcription start site region 92373
Tssr92374 10 12976229 to 12976251 22 + TSS region transcription start site region 92374
Tssr92375 10 12976318 to 12976327 9 + TSS region transcription start site region 92375
Cpgi1305 10 12995599 to 12995863 264 CpG island CpG island 1305
Bmiq9 10 13000000 to 25000000 12000000 QTL body mass index QTL 9
Cpgi1306 10 13008267 to 13009137 870 CpG island CpG island 1306
Tssr92376 10 13008423 to 13008437 14 + TSS region transcription start site region 92376
Tssr92377 10 13008442 to 13008519 77 + TSS region transcription start site region 92377
Sf3b5 10 13008450 to 13009183 733 + protein coding gene splicing factor 3b, subunit 5
Tssr92378 10 13008534 to 13008547 13 + TSS region transcription start site region 92378
Gm47691 10 13043097 to 13051385 8288 - lincRNA gene predicted gene, 47691
Tssr96742 10 13060385 to 13060400 15 - TSS region transcription start site region 96742
Tssr96743 10 13060425 to 13060432 7 - TSS region transcription start site region 96743
Tssr92379 10 13060529 to 13060538 9 + TSS region transcription start site region 92379
Tssr92380 10 13060699 to 13060723 24 + TSS region transcription start site region 92380
Gm40602 10 13060724 to 13084712 23988 + lncRNA gene predicted gene, 40602
Cpgi1307 10 13060733 to 13061341 608 CpG island CpG island 1307
Cpgi1308 10 13090345 to 13091351 1006 CpG island CpG island 1308
Plagl1 10 13090788 to 13131694 40906 + protein coding gene pleiomorphic adenoma gene-like 1
Tssr92381 10 13090825 to 13090843 18 + TSS region transcription start site region 92381
Hymai 10 13090845 to 13095900 5055 + lncRNA gene hydatidiform mole associated and imprinted transcript
Gm27741 10 13091581 to 13091817 236 - unclassified non-coding RNA gene predicted gene, 27741
Tssr92382 10 13108818 to 13108822 4 + TSS region transcription start site region 92382
Tssr92383 10 13109390 to 13109393 3 + TSS region transcription start site region 92383
2610311E24Rik 10 13115489 to 13116143 654 unclassified non-coding RNA gene RIKEN cDNA 2610311E24 gene
Tssr92384 10 13124951 to 13124965 14 + TSS region transcription start site region 92384
Cpgi1309 10 13127202 to 13127522 320 CpG island CpG island 1309
Tssr92385 10 13129017 to 13129051 34 + TSS region transcription start site region 92385
Tssr92386 10 13129575 to 13129584 9 + TSS region transcription start site region 92386
Tssr92387 10 13129825 to 13129856 31 + TSS region transcription start site region 92387
Tssr92388 10 13130023 to 13130059 36 + TSS region transcription start site region 92388
Tssr92389 10 13130316 to 13130337 21 + TSS region transcription start site region 92389
Tssr92390 10 13130593 to 13130639 46 + TSS region transcription start site region 92390
Zc2hc1b 10 13149644 to 13178038 28394 - protein coding gene zinc finger, C2HC-type containing 1B
Tssr96744 10 13177989 to 13178004 15 - TSS region transcription start site region 96744
Ltv1 10 13178597 to 13193137 14540 - protein coding gene LTV1 ribosome biogenesis factor
Tssr96745 10 13182411 to 13182444 33 - TSS region transcription start site region 96745
Cpgi1310 10 13192720 to 13193332 612 CpG island CpG island 1310
Tssr96746 10 13192730 to 13192800 70 - TSS region transcription start site region 96746
Tssr96747 10 13193069 to 13193076 7 - TSS region transcription start site region 96747
Tssr96748 10 13193096 to 13193155 59 - TSS region transcription start site region 96748
Tssr96749 10 13193156 to 13193167 11 - TSS region transcription start site region 96749
Gm47402 10 13205226 to 13205645 419 + pseudogene predicted gene, 47402
Phactr2 10 13207717 to 13474412 266695 - protein coding gene phosphatase and actin regulator 2
Tssr96750 10 13209934 to 13209937 3 - TSS region transcription start site region 96750
Gm46211 10 13224869 to 13227608 2739 + lncRNA gene predicted gene, 46211
Tssr96751 10 13292038 to 13292071 33 - TSS region transcription start site region 96751
Tssr96752 10 13301107 to 13301116 9 - TSS region transcription start site region 96752
Tssr96753 10 13303970 to 13303977 7 - TSS region transcription start site region 96753
Tssr92391 10 13304114 to 13304127 13 + TSS region transcription start site region 92391
Tssr96754 10 13304719 to 13304754 35 - TSS region transcription start site region 96754
Tssr92392 10 13304957 to 13304982 25 + TSS region transcription start site region 92392
Cpgi1311 10 13323827 to 13324499 672 CpG island CpG island 1311
Tssr96755 10 13324221 to 13324242 21 - TSS region transcription start site region 96755
Tssr96756 10 13324250 to 13324318 68 - TSS region transcription start site region 96756
Tssr96757 10 13335505 to 13335514 9 - TSS region transcription start site region 96757
Tssr96758 10 13375058 to 13375075 17 - TSS region transcription start site region 96758
Tssr96759 10 13375358 to 13375374 16 - TSS region transcription start site region 96759
Tssr96760 10 13388755 to 13388774 19 - TSS region transcription start site region 96760
Tssr96761 10 13388830 to 13388845 15 - TSS region transcription start site region 96761
Cpgi1312 10 13420258 to 13420531 273 CpG island CpG island 1312
D10Mit211 10 13427317 to 13427431 114 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 211
Tssr96762 10 13428712 to 13428729 17 - TSS region transcription start site region 96762
Tssr96763 10 13443682 to 13443694 12 - TSS region transcription start site region 96763
Tssr3139 10 13446062 to 13446104 42 - TSS region transcription start site region 3139
Tssr96764 10 13446108 to 13446134 26 - TSS region transcription start site region 96764
Tssr96765 10 13446146 to 13446155 9 - TSS region transcription start site region 96765
Cpgi1313 10 13473472 to 13474773 1301 CpG island CpG island 1313
Tssr96766 10 13474281 to 13474324 43 - TSS region transcription start site region 96766
Tssr96767 10 13474361 to 13474441 80 - TSS region transcription start site region 96767
Tssr96768 10 13474667 to 13474703 36 - TSS region transcription start site region 96768
Tssr92393 10 13499534 to 13499548 14 + TSS region transcription start site region 92393
Fuca2 10 13500569 to 13517275 16706 + protein coding gene fucosidase, alpha-L- 2, plasma
Tssr96769 10 13500908 to 13500947 39 - TSS region transcription start site region 96769
Cpgi1314 10 13501022 to 13501519 497 CpG island CpG island 1314
Tssr92394 10 13501032 to 13501043 11 + TSS region transcription start site region 92394
Tssr92395 10 13501046 to 13501070 24 + TSS region transcription start site region 92395
Tssr92396 10 13501076 to 13501095 19 + TSS region transcription start site region 92396
Tssr92397 10 13501150 to 13501190 40 + TSS region transcription start site region 92397
Tssr92398 10 13502704 to 13502718 14 + TSS region transcription start site region 92398
Pex3 10 13523842 to 13553142 29300 - protein coding gene peroxisomal biogenesis factor 3
Tssr96770 10 13540316 to 13540319 3 - TSS region transcription start site region 96770
Cpgi1315 10 13552851 to 13553485 634 CpG island CpG island 1315
Tssr96771 10 13552855 to 13552870 15 - TSS region transcription start site region 96771
Adat2 10 13552907 to 13563376 10469 + protein coding gene adenosine deaminase, tRNA-specific 2
Tssr96772 10 13552999 to 13553061 62 - TSS region transcription start site region 96772
Tssr96773 10 13553063 to 13553085 22 - TSS region transcription start site region 96773
Tssr96774 10 13553111 to 13553126 15 - TSS region transcription start site region 96774
Tssr96775 10 13553140 to 13553153 13 - TSS region transcription start site region 96775
Tssr96776 10 13553155 to 13553166 11 - TSS region transcription start site region 96776
Tssr92399 10 13553187 to 13553239 52 + TSS region transcription start site region 92399
Tssr92400 10 13553245 to 13553258 13 + TSS region transcription start site region 92400
Gm48773 10 13627198 to 13635107 7909 + lincRNA gene predicted gene, 48773
Aig1 10 13647054 to 13868980 221926 - protein coding gene androgen-induced 1
A730010A20Rik 10 13669955 to 13672214 2259 unclassified gene RIKEN cDNA A730010A20 gene
Tssr164702 10 13678139 to 13678140 1 + TSS region transcription start site region 164702
Tssr96777 10 13678987 to 13679011 24 - TSS region transcription start site region 96777
6430706H07Rik 10 13687205 to 13689806 2601 unclassified gene RIKEN cDNA 6430706H07 gene
Cpgi1316 10 13739998 to 13740173 175 CpG island CpG island 1316
Tssr96778 10 13832621 to 13832659 38 - TSS region transcription start site region 96778
Tssr96779 10 13832678 to 13832707 29 - TSS region transcription start site region 96779
Tssr96780 10 13832735 to 13832748 13 - TSS region transcription start site region 96780
Tssr92401 10 13832794 to 13832800 6 + TSS region transcription start site region 92401
Cpgi1317 10 13868236 to 13869225 989 CpG island CpG island 1317
Tssr3140 10 13868756 to 13868776 20 - TSS region transcription start site region 3140
Tssr96781 10 13868779 to 13868874 95 - TSS region transcription start site region 96781
Tssr96782 10 13868932 to 13869004 72 - TSS region transcription start site region 96782
Tssr96783 10 13869750 to 13869781 31 - TSS region transcription start site region 96783
Gm32172 10 13871280 to 13879208 7928 + lincRNA gene predicted gene, 32172
Gm32105 10 13878048 to 13883265 5217 - lincRNA gene predicted gene, 32105
Gm22995 10 13888537 to 13888643 106 - snRNA gene predicted gene, 22995
Gm8330 10 13890646 to 13891653 1007 - pseudogene predicted gene 8330
4930444K16Rik 10 13927198 to 13928964 1766 - unclassified gene RIKEN cDNA 4930444K16 gene
Cpgi1318 10 13964543 to 13968206 3663 CpG island CpG island 1318
Tssr92402 10 13964626 to 13964647 21 + TSS region transcription start site region 92402
Tssr92403 10 13964796 to 13964814 18 + TSS region transcription start site region 92403
Tssr92404 10 13964827 to 13964847 20 + TSS region transcription start site region 92404
Tssr92405 10 13964849 to 13964875 26 + TSS region transcription start site region 92405
Tssr92406 10 13965014 to 13965043 29 + TSS region transcription start site region 92406
Tssr92407 10 13965239 to 13965248 9 + TSS region transcription start site region 92407
Tssr92408 10 13965258 to 13965279 21 + TSS region transcription start site region 92408
Tssr92409 10 13965290 to 13965312 22 + TSS region transcription start site region 92409
Tssr92410 10 13965328 to 13965339 11 + TSS region transcription start site region 92410
Tssr96784 10 13965644 to 13965650 6 - TSS region transcription start site region 96784
Tssr96785 10 13965662 to 13965675 13 - TSS region transcription start site region 96785
2900084C01Rik 10 13965773 to 13965974 201 unclassified gene RIKEN cDNA 2900084C01 gene
Tssr92411 10 13965779 to 13965839 60 + TSS region transcription start site region 92411
Tssr92412 10 13965851 to 13965871 20 + TSS region transcription start site region 92412
Tssr92413 10 13965883 to 13965892 9 + TSS region transcription start site region 92413
Hivep2 10 13966075 to 14151374 185299 + protein coding gene human immunodeficiency virus type I enhancer binding protein 2
Tssr92414 10 13966093 to 13966110 17 + TSS region transcription start site region 92414
Tssr3141 10 13966111 to 13966114 3 + TSS region transcription start site region 3141
Tssr92415 10 13966174 to 13966201 27 + TSS region transcription start site region 92415
Tssr92416 10 13966206 to 13966222 16 + TSS region transcription start site region 92416
Tssr92417 10 13966239 to 13966244 5 + TSS region transcription start site region 92417
Tssr92418 10 13966268 to 13966284 16 + TSS region transcription start site region 92418
Tssr96786 10 13966750 to 13966763 13 - TSS region transcription start site region 96786
Tssr96787 10 13966780 to 13966788 8 - TSS region transcription start site region 96787
Tssr96788 10 13966821 to 13966871 50 - TSS region transcription start site region 96788
Tssr92419 10 13966977 to 13967008 31 + TSS region transcription start site region 92419
Tssr92420 10 13967009 to 13967040 31 + TSS region transcription start site region 92420
Gm26835 10 13967024 to 14007405 40381 - lincRNA gene predicted gene, 26835
Tssr92421 10 13967134 to 13967200 66 + TSS region transcription start site region 92421
Tssr96789 10 13967476 to 13967500 24 - TSS region transcription start site region 96789
Tssr96790 10 13967633 to 13967650 17 - TSS region transcription start site region 96790
Tssr92422 10 13967821 to 13967841 20 + TSS region transcription start site region 92422
A230061C15Rik 10 13975160 to 13982178 7018 unclassified gene RIKEN cDNA A230061C15 gene
Tssr92423 10 13975841 to 13975842 1 + TSS region transcription start site region 92423
Cpgi1319 10 13982755 to 13983173 418 CpG island CpG island 1319
Tssr92424 10 13983109 to 13983130 21 + TSS region transcription start site region 92424
Tssr3142 10 13983774 to 13983789 15 - TSS region transcription start site region 3142