Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:12888818-13328822

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr96730 10 12915478 to 12915493 15 - TSS region transcription start site region 96730
B230208H11Rik 10 12916648 to 12923090 6442 - lincRNA gene RIKEN cDNA B230208H11 gene
Cpgi1302 10 12922413 to 12923285 872 CpG island CpG island 1302
n-TLtaa3 10 12922571 to 12922653 82 - tRNA gene nuclear encoded tRNA leucine 3 (anticodon TAA)
Tssr96731 10 12923039 to 12923073 34 - TSS region transcription start site region 96731
Tssr96732 10 12923075 to 12923080 5 - TSS region transcription start site region 96732
Tssr96733 10 12923103 to 12923143 40 - TSS region transcription start site region 96733
Tssr96734 10 12929868 to 12929873 5 - TSS region transcription start site region 96734
Stx11 10 12939983 to 12964498 24515 - protein coding gene syntaxin 11
Cpgi1303 10 12941049 to 12941956 907 CpG island CpG island 1303
Tssr92370 10 12956061 to 12956075 14 + TSS region transcription start site region 92370
Tssr92371 10 12963519 to 12963523 4 + TSS region transcription start site region 92371
Tssr96735 10 12963865 to 12963873 8 - TSS region transcription start site region 96735
Cpgi1304 10 12963936 to 12964850 914 CpG island CpG island 1304
Tssr96736 10 12964211 to 12964245 34 - TSS region transcription start site region 96736
Tssr96737 10 12964252 to 12964278 26 - TSS region transcription start site region 96737
Tssr96738 10 12964441 to 12964472 31 - TSS region transcription start site region 96738
Tssr96739 10 12964488 to 12964515 27 - TSS region transcription start site region 96739
Tssr96740 10 12974682 to 12974709 27 - TSS region transcription start site region 96740
Tssr92372 10 12974805 to 12974819 14 + TSS region transcription start site region 92372
Tssr96741 10 12975595 to 12975604 9 - TSS region transcription start site region 96741
Tssr92373 10 12975703 to 12975714 11 + TSS region transcription start site region 92373
Tssr92374 10 12976229 to 12976251 22 + TSS region transcription start site region 92374
Tssr92375 10 12976318 to 12976327 9 + TSS region transcription start site region 92375
Cpgi1305 10 12995599 to 12995863 264 CpG island CpG island 1305
Bmiq9 10 13000000 to 25000000 12000000 QTL body mass index QTL 9
Cpgi1306 10 13008267 to 13009137 870 CpG island CpG island 1306
Tssr92376 10 13008423 to 13008437 14 + TSS region transcription start site region 92376
Tssr92377 10 13008442 to 13008519 77 + TSS region transcription start site region 92377
Sf3b5 10 13008450 to 13009183 733 + protein coding gene splicing factor 3b, subunit 5
Tssr92378 10 13008534 to 13008547 13 + TSS region transcription start site region 92378
Gm47691 10 13043097 to 13051385 8288 - lincRNA gene predicted gene, 47691
Tssr96742 10 13060385 to 13060400 15 - TSS region transcription start site region 96742
Tssr96743 10 13060425 to 13060432 7 - TSS region transcription start site region 96743
Tssr92379 10 13060529 to 13060538 9 + TSS region transcription start site region 92379
Tssr92380 10 13060699 to 13060723 24 + TSS region transcription start site region 92380
Gm40602 10 13060724 to 13084712 23988 + lncRNA gene predicted gene, 40602
Cpgi1307 10 13060733 to 13061341 608 CpG island CpG island 1307
Cpgi1308 10 13090345 to 13091351 1006 CpG island CpG island 1308
Plagl1 10 13090788 to 13131694 40906 + protein coding gene pleiomorphic adenoma gene-like 1
Tssr92381 10 13090825 to 13090843 18 + TSS region transcription start site region 92381
Hymai 10 13090845 to 13095900 5055 + lncRNA gene hydatidiform mole associated and imprinted transcript
Gm27741 10 13091581 to 13091817 236 - unclassified non-coding RNA gene predicted gene, 27741
Tssr92382 10 13108818 to 13108822 4 + TSS region transcription start site region 92382
Tssr92383 10 13109390 to 13109393 3 + TSS region transcription start site region 92383
2610311E24Rik 10 13115489 to 13116143 654 unclassified non-coding RNA gene RIKEN cDNA 2610311E24 gene
Tssr92384 10 13124951 to 13124965 14 + TSS region transcription start site region 92384
Cpgi1309 10 13127202 to 13127522 320 CpG island CpG island 1309
Tssr92385 10 13129017 to 13129051 34 + TSS region transcription start site region 92385
Tssr92386 10 13129575 to 13129584 9 + TSS region transcription start site region 92386
Tssr92387 10 13129825 to 13129856 31 + TSS region transcription start site region 92387
Tssr92388 10 13130023 to 13130059 36 + TSS region transcription start site region 92388
Tssr92389 10 13130316 to 13130337 21 + TSS region transcription start site region 92389
Tssr92390 10 13130593 to 13130639 46 + TSS region transcription start site region 92390
Zc2hc1b 10 13149644 to 13178038 28394 - protein coding gene zinc finger, C2HC-type containing 1B
Tssr96744 10 13177989 to 13178004 15 - TSS region transcription start site region 96744
Ltv1 10 13178597 to 13193137 14540 - protein coding gene LTV1 ribosome biogenesis factor
Tssr96745 10 13182411 to 13182444 33 - TSS region transcription start site region 96745
Cpgi1310 10 13192720 to 13193332 612 CpG island CpG island 1310
Tssr96746 10 13192730 to 13192800 70 - TSS region transcription start site region 96746
Tssr96747 10 13193069 to 13193076 7 - TSS region transcription start site region 96747
Tssr96748 10 13193096 to 13193155 59 - TSS region transcription start site region 96748
Tssr96749 10 13193156 to 13193167 11 - TSS region transcription start site region 96749
Gm47402 10 13205226 to 13205645 419 + pseudogene predicted gene, 47402
Phactr2 10 13207717 to 13474412 266695 - protein coding gene phosphatase and actin regulator 2
Tssr96750 10 13209934 to 13209937 3 - TSS region transcription start site region 96750
Gm46211 10 13224869 to 13227608 2739 + lncRNA gene predicted gene, 46211
Tssr96751 10 13292038 to 13292071 33 - TSS region transcription start site region 96751
Tssr96752 10 13301107 to 13301116 9 - TSS region transcription start site region 96752
Tssr96753 10 13303970 to 13303977 7 - TSS region transcription start site region 96753
Tssr92391 10 13304114 to 13304127 13 + TSS region transcription start site region 92391
Tssr96754 10 13304719 to 13304754 35 - TSS region transcription start site region 96754
Tssr92392 10 13304957 to 13304982 25 + TSS region transcription start site region 92392
Cpgi1311 10 13323827 to 13324499 672 CpG island CpG island 1311
Tssr96755 10 13324221 to 13324242 21 - TSS region transcription start site region 96755
Tssr96756 10 13324250 to 13324318 68 - TSS region transcription start site region 96756