Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:128773680-130384442

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frct3a 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3a
Frct3c 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3c
Frct3 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3
Opfaq10 10 125797802 to 129630506 3832704 QTL open field activity QTL 10
Frct3b 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3b
Frct3d 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3d
Opfaq7 10 127910449 to 129630506 1720057 QTL open field activity QTL 7
Rpsa-ps2 10 128776371 to 128777250 879 - pseudogene ribosomal protein SA, pseudogene 2
Gm47093 10 128789429 to 128801393 11964 - antisense lncRNA gene predicted gene, 47093
Tssr96448 10 128790903 to 128790968 65 + TSS region transcription start site region 96448
Mmp19 10 128790910 to 128800824 9914 + protein coding gene matrix metallopeptidase 19
Tssr96449 10 128798942 to 128798979 37 + TSS region transcription start site region 96449
Tssr96450 10 128799957 to 128799991 34 + TSS region transcription start site region 96450
Tmem198b 10 128800036 to 128804370 4334 - protein coding gene transmembrane protein 198b
Tssr99960 10 128803946 to 128803995 49 - TSS region transcription start site region 99960
Tssr99961 10 128804144 to 128804157 13 - TSS region transcription start site region 99961
Tssr99962 10 128804353 to 128804374 21 - TSS region transcription start site region 99962
Tssr99963 10 128804375 to 128804395 20 - TSS region transcription start site region 99963
Tssr99964 10 128804408 to 128804446 38 - TSS region transcription start site region 99964
Tssr99965 10 128804455 to 128804470 15 - TSS region transcription start site region 99965
Tssr96451 10 128804755 to 128804782 27 + TSS region transcription start site region 96451
Cpgi2420 10 128804829 to 128805820 991 CpG island CpG island 2420
Tssr96452 10 128805011 to 128805032 21 + TSS region transcription start site region 96452
Tssr3401 10 128805330 to 128805351 21 - TSS region transcription start site region 3401
Tssr99966 10 128805359 to 128805391 32 - TSS region transcription start site region 99966
Dnajc14 10 128805523 to 128819446 13923 + protein coding gene DnaJ heat shock protein family (Hsp40) member C14
Tssr96453 10 128805529 to 128805590 61 + TSS region transcription start site region 96453
Tssr96454 10 128805592 to 128805651 59 + TSS region transcription start site region 96454
Tssr96455 10 128805652 to 128805694 42 + TSS region transcription start site region 96455
Tssr96456 10 128805794 to 128805806 12 + TSS region transcription start site region 96456
Ormdl2 10 128817902 to 128821645 3743 - protein coding gene ORM1-like 2 (S. cerevisiae)
Sarnp 10 128819650 to 128877638 57988 + protein coding gene SAP domain containing ribonucleoprotein
Tssr96457 10 128819670 to 128819674 4 + TSS region transcription start site region 96457
Cpgi2421 10 128821454 to 128822167 713 CpG island CpG island 2421
Tssr99967 10 128821576 to 128821632 56 - TSS region transcription start site region 99967
Tssr96458 10 128821726 to 128821737 11 + TSS region transcription start site region 96458
Tssr96459 10 128821745 to 128821773 28 + TSS region transcription start site region 96459
Tssr96460 10 128821784 to 128821800 16 + TSS region transcription start site region 96460
Tssr96461 10 128821887 to 128821913 26 + TSS region transcription start site region 96461
Tssr96462 10 128831265 to 128831298 33 + TSS region transcription start site region 96462
Tssr96463 10 128861425 to 128861475 50 + TSS region transcription start site region 96463
Tssr96464 10 128861970 to 128861993 23 + TSS region transcription start site region 96464
Tssr99968 10 128882976 to 128882980 4 - TSS region transcription start site region 99968
Gdf11 10 128884546 to 128891718 7172 - protein coding gene growth differentiation factor 11
Cpgi2422 10 128890713 to 128892378 1665 CpG island CpG island 2422
Tssr99969 10 128891674 to 128891715 41 - TSS region transcription start site region 99969
Tssr99970 10 128891863 to 128891878 15 - TSS region transcription start site region 99970
Tssr96465 10 128896235 to 128896246 11 + TSS region transcription start site region 96465
Tssr96466 10 128896247 to 128896258 11 + TSS region transcription start site region 96466
Tssr96467 10 128900329 to 128900361 32 + TSS region transcription start site region 96467
Tssr96468 10 128900964 to 128900975 11 + TSS region transcription start site region 96468
Tssr96469 10 128908907 to 128908925 18 + TSS region transcription start site region 96469
Cd63 10 128908919 to 128912822 3903 + protein coding gene CD63 antigen
Tssr96470 10 128908966 to 128908978 12 + TSS region transcription start site region 96470
Tssr96471 10 128908996 to 128909027 31 + TSS region transcription start site region 96471
Tssr96472 10 128909404 to 128909429 25 + TSS region transcription start site region 96472
Tssr96473 10 128909430 to 128909443 13 + TSS region transcription start site region 96473
Cpgi2423 10 128909433 to 128910858 1425 CpG island CpG island 2423
Tssr96474 10 128909629 to 128909636 7 + TSS region transcription start site region 96474
Tssr96475 10 128909869 to 128909873 4 + TSS region transcription start site region 96475
Tssr96476 10 128909895 to 128909930 35 + TSS region transcription start site region 96476
Tssr96477 10 128911473 to 128911518 45 + TSS region transcription start site region 96477
Tssr96478 10 128911569 to 128911598 29 + TSS region transcription start site region 96478
Rdh5 10 128913588 to 128919297 5709 - protein coding gene retinol dehydrogenase 5
Tssr99971 10 128919173 to 128919184 11 - TSS region transcription start site region 99971
Tssr99972 10 128919190 to 128919227 37 - TSS region transcription start site region 99972
Bloc1s1 10 128919220 to 128923550 4330 - protein coding gene biogenesis of lysosomal organelles complex-1, subunit 1
Tssr99973 10 128919248 to 128919253 5 - TSS region transcription start site region 99973
Tssr99974 10 128919259 to 128919305 46 - TSS region transcription start site region 99974
Tssr96479 10 128922583 to 128922597 14 + TSS region transcription start site region 96479
Tssr99975 10 128922978 to 128923069 91 - TSS region transcription start site region 99975
Cpgi2424 10 128922989 to 128923705 716 CpG island CpG island 2424
Tssr99976 10 128923439 to 128923545 106 - TSS region transcription start site region 99976
Tssr99977 10 128923948 to 128923957 9 - TSS region transcription start site region 99977
Tssr96480 10 128933751 to 128933763 12 + TSS region transcription start site region 96480
Cpgi2425 10 128933751 to 128934264 513 CpG island CpG island 2425
Tssr96481 10 128933776 to 128933781 5 + TSS region transcription start site region 96481
Tssr96482 10 128933782 to 128933828 46 + TSS region transcription start site region 96482
Itga7 10 128933818 to 128958282 24464 + protein coding gene integrin alpha 7
Gm46186 10 128935998 to 128949026 13028 - lncRNA gene predicted gene, 46186
Tssr96483 10 128940683 to 128940694 11 + TSS region transcription start site region 96483
Gm25494 10 128944905 to 128945004 99 + snRNA gene predicted gene, 25494
D10Mit269 10 128954267 to 128954362 95 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 269
Mettl7b 10 128958277 to 128960988 2711 - protein coding gene methyltransferase like 7B
Tssr99978 10 128958805 to 128958816 11 - TSS region transcription start site region 99978
Tssr99979 10 128958945 to 128958954 9 - TSS region transcription start site region 99979
D10Utsw1 10 128959290 to 128959450 160 DNA segment DNA segment, Chr 10, University of Texas Southwestern 1
Tssr99980 10 128960612 to 128960639 27 - TSS region transcription start site region 99980
Tssr99981 10 128960671 to 128960695 24 - TSS region transcription start site region 99981
Tssr99982 10 128960825 to 128960853 28 - TSS region transcription start site region 99982
Tssr99983 10 128960948 to 128960959 11 - TSS region transcription start site region 99983
Tssr99984 10 128960965 to 128960982 17 - TSS region transcription start site region 99984
Tssr3402 10 128961012 to 128961013 1 - TSS region transcription start site region 3402
Tssr96484 10 128971077 to 128971086 9 + TSS region transcription start site region 96484
Tssr96485 10 128971191 to 128971202 11 + TSS region transcription start site region 96485
9030616G12Rik 10 128971197 to 128978115 6918 + lincRNA gene RIKEN cDNA 9030616G12 gene
Tssr96486 10 128971216 to 128971229 13 + TSS region transcription start site region 96486
Tssr99985 10 128980939 to 128980952 13 - TSS region transcription start site region 99985
Olfr9 10 128989914 to 128990852 938 + protein coding gene olfactory receptor 9
Tssr99986 10 128999345 to 128999351 6 - TSS region transcription start site region 99986
Olfr763 10 129011287 to 129012216 929 + protein coding gene olfactory receptor 763
Olfr764-ps1 10 129033860 to 129034798 938 - pseudogene olfactory receptor 764, pseudogene 1
Olfr765 10 129046132 to 129047061 929 - protein coding gene olfactory receptor 765
Olfr766-ps1 10 129063028 to 129063966 938 - pseudogene olfactory receptor 766, pseudogene 1
Olfr767 10 129079032 to 129079961 929 - protein coding gene olfactory receptor 767
Olfr768 10 129093034 to 129093972 938 - protein coding gene olfactory receptor 768
Olfr769 10 129111485 to 129112423 938 - protein coding gene olfactory receptor 769
Olfr770 10 129132831 to 129138794 5963 - protein coding gene olfactory receptor 770
Olfr771 10 129160029 to 129160982 953 - protein coding gene olfactory receptor 771
Gm25807 10 129172573 to 129172877 304 - unclassified non-coding RNA gene predicted gene, 25807
Olfr772 10 129174051 to 129175054 1003 - protein coding gene olfactory receptor 772
Olfr773 10 129186484 to 129187419 935 - protein coding gene olfactory receptor 773
Gm6538 10 129228727 to 129229922 1195 - pseudogene predicted gene 6538
Gm18803 10 129231532 to 129233291 1759 - pseudogene predicted gene, 18803
Olfr774 10 129238151 to 129239089 938 + protein coding gene olfactory receptor 774
Olfr775 10 129250536 to 129251474 938 + protein coding gene olfactory receptor 775
Olfr776 10 129260963 to 129261901 938 + protein coding gene olfactory receptor 776
Olfr777 10 129268386 to 129270550 2164 - protein coding gene olfactory receptor 777
Olfr778-ps1 10 129288793 to 129288999 206 - pseudogene olfactory receptor 778, pseudogene 1
Gm25764 10 129302091 to 129302224 133 + snoRNA gene predicted gene, 25764
Olfr779 10 129311180 to 129312108 928 + polymorphic pseudogene olfactory receptor 779
Olfr780 10 129321625 to 129322563 938 + protein coding gene olfactory receptor 780
Olfr781 10 129332883 to 129333818 935 + protein coding gene olfactory receptor 781
Olfr782 10 129350565 to 129351509 944 + protein coding gene olfactory receptor 782
Olfr783-ps1 10 129376961 to 129377401 440 + pseudogene olfactory receptor 783, pseudogene 1
Olfr784 10 129387635 to 129388822 1187 + protein coding gene olfactory receptor 784
Olfr785 10 129409368 to 129410306 938 + protein coding gene olfactory receptor 785
Olfr786 10 129436814 to 129437752 938 + protein coding gene olfactory receptor 786
Olfr787 10 129461940 to 129463616 1676 + protein coding gene olfactory receptor 787
Gm18121 10 129465979 to 129466517 538 + pseudogene predicted gene, 18121
Olfr788 10 129472694 to 129473629 935 + protein coding gene olfactory receptor 788
Olfr789 10 129487012 to 129487950 938 + protein coding gene olfactory receptor 789
Olfr790 10 129500886 to 129501854 968 + protein coding gene olfactory receptor 790
Olfr791 10 129526229 to 129527167 938 + protein coding gene olfactory receptor 791
Olfr792 10 129540539 to 129541474 935 + protein coding gene olfactory receptor 792
Olfr793-ps1 10 129547660 to 129548554 894 + pseudogene olfactory receptor 793, pseudogene 1
Olfr794 10 129567662 to 129571619 3957 + protein coding gene olfactory receptor 794
Olfr795-ps1 10 129578680 to 129579442 762 + pseudogene olfactory receptor 795, pseudogene 1
Gm23252 10 129582786 to 129582895 109 - miRNA gene predicted gene, 23252
Olfr796 10 129607547 to 129608479 932 - protein coding gene olfactory receptor 796
Olfr797-ps1 10 129622198 to 129622612 414 - pseudogene olfactory receptor 797, pseudogene 1
Olfr798 10 129625124 to 129627886 2762 - protein coding gene olfactory receptor 798
Olfr799 10 129647130 to 129648065 935 + protein coding gene olfactory receptor 799
Olfr800 10 129659808 to 129660743 935 + protein coding gene olfactory receptor 800
Tssr3403 10 129664864 to 129664869 5 + TSS region transcription start site region 3403
Smt3h2-ps3 10 129664875 to 129665862 987 + pseudogene SMT3 suppressor of mif two 3 homolog 2, pseudogene 3 (S. cerevisiae)
Olfr801 10 129669561 to 129670517 956 - protein coding gene olfactory receptor 801
Olfr802 10 129681799 to 129686098 4299 - protein coding gene olfactory receptor 802
Olfr803 10 129691113 to 129692039 926 - protein coding gene olfactory receptor 803
Gm24717 10 129695978 to 129696101 123 + snoRNA gene predicted gene, 24717
Olfr804 10 129704880 to 129705824 944 + protein coding gene olfactory receptor 804
Olfr805 10 129722583 to 129729292 6709 - protein coding gene olfactory receptor 805
Gm24485 10 129733232 to 129733298 66 + miRNA gene predicted gene, 24485
Olfr806 10 129737974 to 129738915 941 - protein coding gene olfactory receptor 806
Olfr807 10 129754495 to 129757800 3305 - protein coding gene olfactory receptor 807
Olfr808 10 129765483 to 129768436 2953 + protein coding gene olfactory receptor 808
Olfr809 10 129775871 to 129776857 986 + protein coding gene olfactory receptor 809
Olfr810 10 129790649 to 129791587 938 - protein coding gene olfactory receptor 810
Olfr811 10 129801564 to 129802523 959 - protein coding gene olfactory receptor 811
Olfr812 10 129842026 to 129845997 3971 - protein coding gene olfactory receptor 812
Olfr813 10 129856520 to 129857452 932 + protein coding gene olfactory receptor 813
Olfr814 10 129873823 to 129874755 932 - protein coding gene olfactory receptor 814
Olfr815 10 129901776 to 129902726 950 - protein coding gene olfactory receptor 815
Olfr816 10 129911338 to 129912276 938 - protein coding gene olfactory receptor 816
Olfr1544-ps1 10 129925115 to 129925417 302 - pseudogene olfactory receptor 1544, pseudogene 1
Olfr817-ps1 10 129929543 to 129930481 938 - pseudogene olfactory receptor 817, pseudogene 1
Olfr818 10 129945104 to 129946060 956 - protein coding gene olfactory receptor 818
Olfr819 10 129965736 to 129966698 962 - protein coding gene olfactory receptor 819
Olfr247 10 129974605 to 129975549 944 - protein coding gene olfactory receptor 247
Gm10310 10 129983480 to 129984442 962 - protein coding gene predicted pseudogene 10310
Gm43977 10 129988142 to 129988330 188 - pseudogene predicted gene, 43977
Tssr96487 10 130004356 to 130004361 5 + TSS region transcription start site region 96487
Olfr820 10 130017363 to 130018301 938 + protein coding gene olfactory receptor 820
Olfr821 10 130030390 to 130034560 4170 + protein coding gene olfactory receptor 821
Olfr822 10 130074412 to 130075350 938 + protein coding gene olfactory receptor 822
Olfr1542-ps1 10 130093192 to 130093842 650 - pseudogene olfactory receptor 1542, pseudogene 1
Olfr823 10 130111841 to 130112788 947 - protein coding gene olfactory receptor 823
Gm5181 10 130120239 to 130121209 970 + pseudogene predicted gene 5181
Olfr824 10 130126108 to 130127055 947 - protein coding gene olfactory receptor 824
Gm9560 10 130140042 to 130149974 9932 + pseudogene predicted gene 9560
Olfr825 10 130162362 to 130163324 962 - protein coding gene olfactory receptor 825
Gm48514 10 130163679 to 130163961 282 + pseudogene predicted gene, 48514
Olfr826 10 130179937 to 130184162 4225 - protein coding gene olfactory receptor 826
Olfr827 10 130210160 to 130211128 968 - protein coding gene olfactory receptor 827
Neurod4 10 130268152 to 130280240 12088 - protein coding gene neurogenic differentiation 4
Tssr99987 10 130280218 to 130280242 24 - TSS region transcription start site region 99987
Tssr99988 10 130280252 to 130280263 11 - TSS region transcription start site region 99988
Tespa1 10 130322826 to 130363469 40643 + protein coding gene thymocyte expressed, positive selection associated 1
Tssr96488 10 130322827 to 130322842 15 + TSS region transcription start site region 96488
Tssr96489 10 130322845 to 130322856 11 + TSS region transcription start site region 96489
Tssr96490 10 130322869 to 130322905 36 + TSS region transcription start site region 96490
Tssr96491 10 130322915 to 130322924 9 + TSS region transcription start site region 96491
Tssr96492 10 130330972 to 130330979 7 + TSS region transcription start site region 96492
Tssr96493 10 130330982 to 130331031 49 + TSS region transcription start site region 96493
Tssr96494 10 130332976 to 130332988 12 + TSS region transcription start site region 96494
Tssr96495 10 130354469 to 130354473 4 + TSS region transcription start site region 96495
Tssr96496 10 130361092 to 130361095 3 + TSS region transcription start site region 96496
Tssr96497 10 130363676 to 130363689 13 + TSS region transcription start site region 96497
Tssr96498 10 130368074 to 130368078 4 + TSS region transcription start site region 96498
Tssr96499 10 130379133 to 130379137 4 + TSS region transcription start site region 96499