Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:128725536-129776474

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frct3 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3
Frct3c 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3c
Frct3a 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3a
Opfaq10 10 125797802 to 129630506 3832704 QTL open field activity QTL 10
Frct3d 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3d
Frct3b 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3b
Opfaq7 10 127910449 to 129630506 1720057 QTL open field activity QTL 7
Dgka 10 128720134 to 128744855 24721 - protein coding gene diacylglycerol kinase, alpha
Tssr99936 10 128734447 to 128734452 5 - TSS region transcription start site region 99936
Cpgi2417 10 128737541 to 128737733 192 CpG island CpG island 2417
Tssr99937 10 128737576 to 128737589 13 - TSS region transcription start site region 99937
Tssr99938 10 128737598 to 128737616 18 - TSS region transcription start site region 99938
Tssr99939 10 128740099 to 128740109 10 - TSS region transcription start site region 99939
Tssr99940 10 128742712 to 128742719 7 - TSS region transcription start site region 99940
Cpgi2418 10 128743597 to 128744223 626 CpG island CpG island 2418
Tssr99941 10 128743833 to 128743845 12 - TSS region transcription start site region 99941
Tssr99942 10 128743869 to 128743910 41 - TSS region transcription start site region 99942
Tssr99943 10 128743961 to 128743972 11 - TSS region transcription start site region 99943
Tssr99944 10 128743984 to 128743995 11 - TSS region transcription start site region 99944
Tssr99945 10 128744014 to 128744085 71 - TSS region transcription start site region 99945
Tssr99946 10 128744091 to 128744109 18 - TSS region transcription start site region 99946
Tssr99947 10 128744240 to 128744252 12 - TSS region transcription start site region 99947
Tssr99948 10 128744265 to 128744282 17 - TSS region transcription start site region 99948
Tssr96440 10 128744793 to 128744822 29 + TSS region transcription start site region 96440
Tssr99949 10 128744846 to 128744887 41 - TSS region transcription start site region 99949
Tssr96441 10 128744937 to 128745023 86 + TSS region transcription start site region 96441
Gm31504 10 128745034 to 128745882 848 + lncRNA gene predicted gene, 31504
Tssr99950 10 128745046 to 128745058 12 - TSS region transcription start site region 99950
Tssr99951 10 128745069 to 128745081 12 - TSS region transcription start site region 99951
Tssr99952 10 128745082 to 128745085 3 - TSS region transcription start site region 99952
Tssr99953 10 128745087 to 128745122 35 - TSS region transcription start site region 99953
Tssr96442 10 128745193 to 128745234 41 + TSS region transcription start site region 96442
Tssr99954 10 128745445 to 128745466 21 - TSS region transcription start site region 99954
Tssr99955 10 128745478 to 128745499 21 - TSS region transcription start site region 99955
Tssr99956 10 128746233 to 128746252 19 - TSS region transcription start site region 99956
Tssr99957 10 128746300 to 128746312 12 - TSS region transcription start site region 99957
Tssr96443 10 128746457 to 128746474 17 + TSS region transcription start site region 96443
Tssr99958 10 128747628 to 128747645 17 - TSS region transcription start site region 99958
Cpgi2419 10 128747702 to 128748742 1040 CpG island CpG island 2419
Tssr99959 10 128747720 to 128747744 24 - TSS region transcription start site region 99959
Tssr96444 10 128747788 to 128747799 11 + TSS region transcription start site region 96444
Tssr96445 10 128747850 to 128747895 45 + TSS region transcription start site region 96445
Pym1 10 128747889 to 128766564 18675 + protein coding gene PYM homolog 1, exon junction complex associated factor
Tssr96446 10 128748501 to 128748538 37 + TSS region transcription start site region 96446
Tssr96447 10 128748751 to 128748783 32 + TSS region transcription start site region 96447
Rpsa-ps2 10 128776371 to 128777250 879 - pseudogene ribosomal protein SA, pseudogene 2
Gm47093 10 128789429 to 128801393 11964 - antisense lncRNA gene predicted gene, 47093
Tssr96448 10 128790903 to 128790968 65 + TSS region transcription start site region 96448
Mmp19 10 128790910 to 128800824 9914 + protein coding gene matrix metallopeptidase 19
Tssr96449 10 128798942 to 128798979 37 + TSS region transcription start site region 96449
Tssr96450 10 128799957 to 128799991 34 + TSS region transcription start site region 96450
Tmem198b 10 128800036 to 128804370 4334 - protein coding gene transmembrane protein 198b
Tssr99960 10 128803946 to 128803995 49 - TSS region transcription start site region 99960
Tssr99961 10 128804144 to 128804157 13 - TSS region transcription start site region 99961
Tssr99962 10 128804353 to 128804374 21 - TSS region transcription start site region 99962
Tssr99963 10 128804375 to 128804395 20 - TSS region transcription start site region 99963
Tssr99964 10 128804408 to 128804446 38 - TSS region transcription start site region 99964
Tssr99965 10 128804455 to 128804470 15 - TSS region transcription start site region 99965
Tssr96451 10 128804755 to 128804782 27 + TSS region transcription start site region 96451
Cpgi2420 10 128804829 to 128805820 991 CpG island CpG island 2420
Tssr96452 10 128805011 to 128805032 21 + TSS region transcription start site region 96452
Tssr3401 10 128805330 to 128805351 21 - TSS region transcription start site region 3401
Tssr99966 10 128805359 to 128805391 32 - TSS region transcription start site region 99966
Dnajc14 10 128805523 to 128819446 13923 + protein coding gene DnaJ heat shock protein family (Hsp40) member C14
Tssr96453 10 128805529 to 128805590 61 + TSS region transcription start site region 96453
Tssr96454 10 128805592 to 128805651 59 + TSS region transcription start site region 96454
Tssr96455 10 128805652 to 128805694 42 + TSS region transcription start site region 96455
Tssr96456 10 128805794 to 128805806 12 + TSS region transcription start site region 96456
Ormdl2 10 128817902 to 128821645 3743 - protein coding gene ORM1-like 2 (S. cerevisiae)
Sarnp 10 128819650 to 128877638 57988 + protein coding gene SAP domain containing ribonucleoprotein
Tssr96457 10 128819670 to 128819674 4 + TSS region transcription start site region 96457
Cpgi2421 10 128821454 to 128822167 713 CpG island CpG island 2421
Tssr99967 10 128821576 to 128821632 56 - TSS region transcription start site region 99967
Tssr96458 10 128821726 to 128821737 11 + TSS region transcription start site region 96458
Tssr96459 10 128821745 to 128821773 28 + TSS region transcription start site region 96459
Tssr96460 10 128821784 to 128821800 16 + TSS region transcription start site region 96460
Tssr96461 10 128821887 to 128821913 26 + TSS region transcription start site region 96461
Tssr96462 10 128831265 to 128831298 33 + TSS region transcription start site region 96462
Tssr96463 10 128861425 to 128861475 50 + TSS region transcription start site region 96463
Tssr96464 10 128861970 to 128861993 23 + TSS region transcription start site region 96464
Tssr99968 10 128882976 to 128882980 4 - TSS region transcription start site region 99968
Gdf11 10 128884546 to 128891718 7172 - protein coding gene growth differentiation factor 11
Cpgi2422 10 128890713 to 128892378 1665 CpG island CpG island 2422
Tssr99969 10 128891674 to 128891715 41 - TSS region transcription start site region 99969
Tssr99970 10 128891863 to 128891878 15 - TSS region transcription start site region 99970
Tssr96465 10 128896235 to 128896246 11 + TSS region transcription start site region 96465
Tssr96466 10 128896247 to 128896258 11 + TSS region transcription start site region 96466
Tssr96467 10 128900329 to 128900361 32 + TSS region transcription start site region 96467
Tssr96468 10 128900964 to 128900975 11 + TSS region transcription start site region 96468
Tssr96469 10 128908907 to 128908925 18 + TSS region transcription start site region 96469
Cd63 10 128908919 to 128912822 3903 + protein coding gene CD63 antigen
Tssr96470 10 128908966 to 128908978 12 + TSS region transcription start site region 96470
Tssr96471 10 128908996 to 128909027 31 + TSS region transcription start site region 96471
Tssr96472 10 128909404 to 128909429 25 + TSS region transcription start site region 96472
Tssr96473 10 128909430 to 128909443 13 + TSS region transcription start site region 96473
Cpgi2423 10 128909433 to 128910858 1425 CpG island CpG island 2423
Tssr96474 10 128909629 to 128909636 7 + TSS region transcription start site region 96474
Tssr96475 10 128909869 to 128909873 4 + TSS region transcription start site region 96475
Tssr96476 10 128909895 to 128909930 35 + TSS region transcription start site region 96476
Tssr96477 10 128911473 to 128911518 45 + TSS region transcription start site region 96477
Tssr96478 10 128911569 to 128911598 29 + TSS region transcription start site region 96478
Rdh5 10 128913588 to 128919297 5709 - protein coding gene retinol dehydrogenase 5
Tssr99971 10 128919173 to 128919184 11 - TSS region transcription start site region 99971
Tssr99972 10 128919190 to 128919227 37 - TSS region transcription start site region 99972
Bloc1s1 10 128919220 to 128923550 4330 - protein coding gene biogenesis of lysosomal organelles complex-1, subunit 1
Tssr99973 10 128919248 to 128919253 5 - TSS region transcription start site region 99973
Tssr99974 10 128919259 to 128919305 46 - TSS region transcription start site region 99974
Tssr96479 10 128922583 to 128922597 14 + TSS region transcription start site region 96479
Tssr99975 10 128922978 to 128923069 91 - TSS region transcription start site region 99975
Cpgi2424 10 128922989 to 128923705 716 CpG island CpG island 2424
Tssr99976 10 128923439 to 128923545 106 - TSS region transcription start site region 99976
Tssr99977 10 128923948 to 128923957 9 - TSS region transcription start site region 99977
Tssr96480 10 128933751 to 128933763 12 + TSS region transcription start site region 96480
Cpgi2425 10 128933751 to 128934264 513 CpG island CpG island 2425
Tssr96481 10 128933776 to 128933781 5 + TSS region transcription start site region 96481
Tssr96482 10 128933782 to 128933828 46 + TSS region transcription start site region 96482
Itga7 10 128933818 to 128958282 24464 + protein coding gene integrin alpha 7
Gm46186 10 128935998 to 128949026 13028 - lncRNA gene predicted gene, 46186
Tssr96483 10 128940683 to 128940694 11 + TSS region transcription start site region 96483
Gm25494 10 128944905 to 128945004 99 + snRNA gene predicted gene, 25494
D10Mit269 10 128954267 to 128954362 95 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 269
Mettl7b 10 128958277 to 128960988 2711 - protein coding gene methyltransferase like 7B
Tssr99978 10 128958805 to 128958816 11 - TSS region transcription start site region 99978
Tssr99979 10 128958945 to 128958954 9 - TSS region transcription start site region 99979
D10Utsw1 10 128959290 to 128959450 160 DNA segment DNA segment, Chr 10, University of Texas Southwestern 1
Tssr99980 10 128960612 to 128960639 27 - TSS region transcription start site region 99980
Tssr99981 10 128960671 to 128960695 24 - TSS region transcription start site region 99981
Tssr99982 10 128960825 to 128960853 28 - TSS region transcription start site region 99982
Tssr99983 10 128960948 to 128960959 11 - TSS region transcription start site region 99983
Tssr99984 10 128960965 to 128960982 17 - TSS region transcription start site region 99984
Tssr3402 10 128961012 to 128961013 1 - TSS region transcription start site region 3402
Tssr96484 10 128971077 to 128971086 9 + TSS region transcription start site region 96484
Tssr96485 10 128971191 to 128971202 11 + TSS region transcription start site region 96485
9030616G12Rik 10 128971197 to 128978115 6918 + lincRNA gene RIKEN cDNA 9030616G12 gene
Tssr96486 10 128971216 to 128971229 13 + TSS region transcription start site region 96486
Tssr99985 10 128980939 to 128980952 13 - TSS region transcription start site region 99985
Olfr9 10 128989914 to 128990852 938 + protein coding gene olfactory receptor 9
Tssr99986 10 128999345 to 128999351 6 - TSS region transcription start site region 99986
Olfr763 10 129011287 to 129012216 929 + protein coding gene olfactory receptor 763
Olfr764-ps1 10 129033860 to 129034798 938 - pseudogene olfactory receptor 764, pseudogene 1
Olfr765 10 129046132 to 129047061 929 - protein coding gene olfactory receptor 765
Olfr766-ps1 10 129063028 to 129063966 938 - pseudogene olfactory receptor 766, pseudogene 1
Olfr767 10 129079032 to 129079961 929 - protein coding gene olfactory receptor 767
Olfr768 10 129093034 to 129093972 938 - protein coding gene olfactory receptor 768
Olfr769 10 129111485 to 129112423 938 - protein coding gene olfactory receptor 769
Olfr770 10 129132831 to 129138794 5963 - protein coding gene olfactory receptor 770
Olfr771 10 129160029 to 129160982 953 - protein coding gene olfactory receptor 771
Gm25807 10 129172573 to 129172877 304 - unclassified non-coding RNA gene predicted gene, 25807
Olfr772 10 129174051 to 129175054 1003 - protein coding gene olfactory receptor 772
Olfr773 10 129186484 to 129187419 935 - protein coding gene olfactory receptor 773
Gm6538 10 129228727 to 129229922 1195 - pseudogene predicted gene 6538
Gm18803 10 129231532 to 129233291 1759 - pseudogene predicted gene, 18803
Olfr774 10 129238151 to 129239089 938 + protein coding gene olfactory receptor 774
Olfr775 10 129250536 to 129251474 938 + protein coding gene olfactory receptor 775
Olfr776 10 129260963 to 129261901 938 + protein coding gene olfactory receptor 776
Olfr777 10 129268386 to 129270550 2164 - protein coding gene olfactory receptor 777
Olfr778-ps1 10 129288793 to 129288999 206 - pseudogene olfactory receptor 778, pseudogene 1
Gm25764 10 129302091 to 129302224 133 + snoRNA gene predicted gene, 25764
Olfr779 10 129311180 to 129312108 928 + polymorphic pseudogene olfactory receptor 779
Olfr780 10 129321625 to 129322563 938 + protein coding gene olfactory receptor 780
Olfr781 10 129332883 to 129333818 935 + protein coding gene olfactory receptor 781
Olfr782 10 129350565 to 129351509 944 + protein coding gene olfactory receptor 782
Olfr783-ps1 10 129376961 to 129377401 440 + pseudogene olfactory receptor 783, pseudogene 1
Olfr784 10 129387635 to 129388822 1187 + protein coding gene olfactory receptor 784
Olfr785 10 129409368 to 129410306 938 + protein coding gene olfactory receptor 785
Olfr786 10 129436814 to 129437752 938 + protein coding gene olfactory receptor 786
Olfr787 10 129461940 to 129463616 1676 + protein coding gene olfactory receptor 787
Gm18121 10 129465979 to 129466517 538 + pseudogene predicted gene, 18121
Olfr788 10 129472694 to 129473629 935 + protein coding gene olfactory receptor 788
Olfr789 10 129487012 to 129487950 938 + protein coding gene olfactory receptor 789
Olfr790 10 129500886 to 129501854 968 + protein coding gene olfactory receptor 790
Olfr791 10 129526229 to 129527167 938 + protein coding gene olfactory receptor 791
Olfr792 10 129540539 to 129541474 935 + protein coding gene olfactory receptor 792
Olfr793-ps1 10 129547660 to 129548554 894 + pseudogene olfactory receptor 793, pseudogene 1
Olfr794 10 129567662 to 129571619 3957 + protein coding gene olfactory receptor 794
Olfr795-ps1 10 129578680 to 129579442 762 + pseudogene olfactory receptor 795, pseudogene 1
Gm23252 10 129582786 to 129582895 109 - miRNA gene predicted gene, 23252
Olfr796 10 129607547 to 129608479 932 - protein coding gene olfactory receptor 796
Olfr797-ps1 10 129622198 to 129622612 414 - pseudogene olfactory receptor 797, pseudogene 1
Olfr798 10 129625124 to 129627886 2762 - protein coding gene olfactory receptor 798
Olfr799 10 129647130 to 129648065 935 + protein coding gene olfactory receptor 799
Olfr800 10 129659808 to 129660743 935 + protein coding gene olfactory receptor 800
Tssr3403 10 129664864 to 129664869 5 + TSS region transcription start site region 3403
Smt3h2-ps3 10 129664875 to 129665862 987 + pseudogene SMT3 suppressor of mif two 3 homolog 2, pseudogene 3 (S. cerevisiae)
Olfr801 10 129669561 to 129670517 956 - protein coding gene olfactory receptor 801
Olfr802 10 129681799 to 129686098 4299 - protein coding gene olfactory receptor 802
Olfr803 10 129691113 to 129692039 926 - protein coding gene olfactory receptor 803
Gm24717 10 129695978 to 129696101 123 + snoRNA gene predicted gene, 24717
Olfr804 10 129704880 to 129705824 944 + protein coding gene olfactory receptor 804
Olfr805 10 129722583 to 129729292 6709 - protein coding gene olfactory receptor 805
Gm24485 10 129733232 to 129733298 66 + miRNA gene predicted gene, 24485
Olfr806 10 129737974 to 129738915 941 - protein coding gene olfactory receptor 806
Olfr807 10 129754495 to 129757800 3305 - protein coding gene olfactory receptor 807
Olfr808 10 129765483 to 129768436 2953 + protein coding gene olfactory receptor 808
Olfr809 10 129775871 to 129776857 986 + protein coding gene olfactory receptor 809