Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:128551520-131162452

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330 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frct3c 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3c
Frct3a 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3a
Frct3 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3
Opfaq10 10 125797802 to 129630506 3832704 QTL open field activity QTL 10
Frct3d 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3d
Frct3b 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3b
Opfaq7 10 127910449 to 129630506 1720057 QTL open field activity QTL 7
Tssr99892 10 128551756 to 128551759 3 - TSS region transcription start site region 99892
Pa2g4 10 128557766 to 128565934 8168 - protein coding gene proliferation-associated 2G4
Gm47275 10 128559201 to 128559319 118 - miRNA gene predicted gene, 47275
Tssr99893 10 128559300 to 128559328 28 - TSS region transcription start site region 99893
Tssr99894 10 128562872 to 128562906 34 - TSS region transcription start site region 99894
Cpgi2409 10 128565135 to 128566569 1434 CpG island CpG island 2409
Tssr99895 10 128565904 to 128565999 95 - TSS region transcription start site region 99895
Tssr99896 10 128566004 to 128566019 15 - TSS region transcription start site region 99896
Tssr99897 10 128566213 to 128566253 40 - TSS region transcription start site region 99897
Tssr99898 10 128568665 to 128568688 23 - TSS region transcription start site region 99898
Erbb3 10 128569368 to 128589501 20133 - protein coding gene erb-b2 receptor tyrosine kinase 3
Tssr99899 10 128578469 to 128578505 36 - TSS region transcription start site region 99899
Tssr99900 10 128583757 to 128583800 43 - TSS region transcription start site region 99900
Mir6917 10 128584437 to 128584497 60 - miRNA gene microRNA 6917
Cpgi2410 10 128589197 to 128590669 1472 CpG island CpG island 2410
Tssr99901 10 128589622 to 128589642 20 - TSS region transcription start site region 99901
Tssr99902 10 128589650 to 128589673 23 - TSS region transcription start site region 99902
Tssr99903 10 128589679 to 128589694 15 - TSS region transcription start site region 99903
Tssr99904 10 128589925 to 128589946 21 - TSS region transcription start site region 99904
Gm47540 10 128595615 to 128598623 3008 + lincRNA gene predicted gene, 47540
Gm9182 10 128615401 to 128616039 638 + pseudogene predicted gene 9182
Rps26 10 128624529 to 128626506 1977 - protein coding gene ribosomal protein S26
Cpgi2411 10 128625998 to 128626571 573 CpG island CpG island 2411
Tssr99905 10 128626421 to 128626443 22 - TSS region transcription start site region 99905
Tssr99906 10 128626453 to 128626458 5 - TSS region transcription start site region 99906
Tssr99907 10 128626464 to 128626520 56 - TSS region transcription start site region 99907
Tssr99908 10 128626532 to 128626537 5 - TSS region transcription start site region 99908
Tssr99909 10 128626554 to 128626556 2 - TSS region transcription start site region 99909
Tssr99910 10 128626672 to 128626689 17 - TSS region transcription start site region 99910
Tssr99911 10 128626696 to 128626715 19 - TSS region transcription start site region 99911
Tssr99912 10 128626723 to 128626740 17 - TSS region transcription start site region 99912
Tssr99913 10 128626751 to 128626767 16 - TSS region transcription start site region 99913
Ikzf4 10 128630843 to 128645991 15148 - protein coding gene IKAROS family zinc finger 4
Tssr96435 10 128637393 to 128637420 27 + TSS region transcription start site region 96435
Tssr99914 10 128642928 to 128642941 13 - TSS region transcription start site region 99914
Cpgi2412 10 128645672 to 128646194 522 CpG island CpG island 2412
Tssr99915 10 128645784 to 128645816 32 - TSS region transcription start site region 99915
Gm26876 10 128645840 to 128647800 1960 + lincRNA gene predicted gene, 26876
Tssr99916 10 128645965 to 128645988 23 - TSS region transcription start site region 99916
Gm49782 10 128651259 to 128669315 18056 - lincRNA gene predicted gene, 49782
Cpgi2413 10 128668877 to 128669327 450 CpG island CpG island 2413
Tssr99917 10 128669227 to 128669240 13 - TSS region transcription start site region 99917
Suox 10 128669887 to 128673918 4031 - protein coding gene sulfite oxidase
Tssr99918 10 128670563 to 128670566 3 - TSS region transcription start site region 99918
Tssr99919 10 128670753 to 128670754 1 - TSS region transcription start site region 99919
Tssr99920 10 128672299 to 128672309 10 - TSS region transcription start site region 99920
Cpgi2414 10 128673678 to 128674428 750 CpG island CpG island 2414
Tssr99921 10 128673869 to 128673888 19 - TSS region transcription start site region 99921
Tssr99922 10 128673896 to 128673925 29 - TSS region transcription start site region 99922
Gm6336 10 128676111 to 128676738 627 - pseudogene predicted pseudogene 6336
Tssr99923 10 128676731 to 128676740 9 - TSS region transcription start site region 99923
Rab5b 10 128677175 to 128696264 19089 - protein coding gene RAB5B, member RAS oncogene family
Cpgi2415 10 128695739 to 128696598 859 CpG island CpG island 2415
Tssr99924 10 128695991 to 128696003 12 - TSS region transcription start site region 99924
Tssr99925 10 128696010 to 128696065 55 - TSS region transcription start site region 99925
Tssr99926 10 128696183 to 128696190 7 - TSS region transcription start site region 99926
Tssr99927 10 128696214 to 128696256 42 - TSS region transcription start site region 99927
Tssr99928 10 128696257 to 128696273 16 - TSS region transcription start site region 99928
Cdk2 10 128697939 to 128705031 7092 - protein coding gene cyclin-dependent kinase 2
Tssr99929 10 128698101 to 128698106 5 - TSS region transcription start site region 99929
Tssr3400 10 128704180 to 128704186 6 + TSS region transcription start site region 3400
Tssr99930 10 128704285 to 128704311 26 - TSS region transcription start site region 99930
Cpgi2416 10 128704419 to 128705262 843 CpG island CpG island 2416
Tssr99931 10 128704947 to 128704975 28 - TSS region transcription start site region 99931
Tssr99932 10 128704978 to 128705049 71 - TSS region transcription start site region 99932
Pmel 10 128705144 to 128720238 15094 + protein coding gene premelanosome protein
Tssr96436 10 128705174 to 128705209 35 + TSS region transcription start site region 96436
Tssr96437 10 128706251 to 128706264 13 + TSS region transcription start site region 96437
Tssr96438 10 128720134 to 128720145 11 + TSS region transcription start site region 96438
Dgka 10 128720134 to 128744855 24721 - protein coding gene diacylglycerol kinase, alpha
Tssr96439 10 128720234 to 128720255 21 + TSS region transcription start site region 96439
Tssr99933 10 128720321 to 128720337 16 - TSS region transcription start site region 99933
Tssr99934 10 128720713 to 128720716 3 - TSS region transcription start site region 99934
Tssr99935 10 128721219 to 128721223 4 - TSS region transcription start site region 99935
Tssr99936 10 128734447 to 128734452 5 - TSS region transcription start site region 99936
Cpgi2417 10 128737541 to 128737733 192 CpG island CpG island 2417
Tssr99937 10 128737576 to 128737589 13 - TSS region transcription start site region 99937
Tssr99938 10 128737598 to 128737616 18 - TSS region transcription start site region 99938
Tssr99939 10 128740099 to 128740109 10 - TSS region transcription start site region 99939
Tssr99940 10 128742712 to 128742719 7 - TSS region transcription start site region 99940
Cpgi2418 10 128743597 to 128744223 626 CpG island CpG island 2418
Tssr99941 10 128743833 to 128743845 12 - TSS region transcription start site region 99941
Tssr99942 10 128743869 to 128743910 41 - TSS region transcription start site region 99942
Tssr99943 10 128743961 to 128743972 11 - TSS region transcription start site region 99943
Tssr99944 10 128743984 to 128743995 11 - TSS region transcription start site region 99944
Tssr99945 10 128744014 to 128744085 71 - TSS region transcription start site region 99945
Tssr99946 10 128744091 to 128744109 18 - TSS region transcription start site region 99946
Tssr99947 10 128744240 to 128744252 12 - TSS region transcription start site region 99947
Tssr99948 10 128744265 to 128744282 17 - TSS region transcription start site region 99948
Tssr96440 10 128744793 to 128744822 29 + TSS region transcription start site region 96440
Tssr99949 10 128744846 to 128744887 41 - TSS region transcription start site region 99949
Tssr96441 10 128744937 to 128745023 86 + TSS region transcription start site region 96441
Gm31504 10 128745034 to 128745882 848 + lncRNA gene predicted gene, 31504
Tssr99950 10 128745046 to 128745058 12 - TSS region transcription start site region 99950
Tssr99951 10 128745069 to 128745081 12 - TSS region transcription start site region 99951
Tssr99952 10 128745082 to 128745085 3 - TSS region transcription start site region 99952
Tssr99953 10 128745087 to 128745122 35 - TSS region transcription start site region 99953
Tssr96442 10 128745193 to 128745234 41 + TSS region transcription start site region 96442
Tssr99954 10 128745445 to 128745466 21 - TSS region transcription start site region 99954
Tssr99955 10 128745478 to 128745499 21 - TSS region transcription start site region 99955
Tssr99956 10 128746233 to 128746252 19 - TSS region transcription start site region 99956
Tssr99957 10 128746300 to 128746312 12 - TSS region transcription start site region 99957
Tssr96443 10 128746457 to 128746474 17 + TSS region transcription start site region 96443
Tssr99958 10 128747628 to 128747645 17 - TSS region transcription start site region 99958
Cpgi2419 10 128747702 to 128748742 1040 CpG island CpG island 2419
Tssr99959 10 128747720 to 128747744 24 - TSS region transcription start site region 99959
Tssr96444 10 128747788 to 128747799 11 + TSS region transcription start site region 96444
Tssr96445 10 128747850 to 128747895 45 + TSS region transcription start site region 96445
Pym1 10 128747889 to 128766564 18675 + protein coding gene PYM homolog 1, exon junction complex associated factor
Tssr96446 10 128748501 to 128748538 37 + TSS region transcription start site region 96446
Tssr96447 10 128748751 to 128748783 32 + TSS region transcription start site region 96447
Rpsa-ps2 10 128776371 to 128777250 879 - pseudogene ribosomal protein SA, pseudogene 2
Gm47093 10 128789429 to 128801393 11964 - antisense lncRNA gene predicted gene, 47093
Tssr96448 10 128790903 to 128790968 65 + TSS region transcription start site region 96448
Mmp19 10 128790910 to 128800824 9914 + protein coding gene matrix metallopeptidase 19
Tssr96449 10 128798942 to 128798979 37 + TSS region transcription start site region 96449
Tssr96450 10 128799957 to 128799991 34 + TSS region transcription start site region 96450
Tmem198b 10 128800036 to 128804370 4334 - protein coding gene transmembrane protein 198b
Tssr99960 10 128803946 to 128803995 49 - TSS region transcription start site region 99960
Tssr99961 10 128804144 to 128804157 13 - TSS region transcription start site region 99961
Tssr99962 10 128804353 to 128804374 21 - TSS region transcription start site region 99962
Tssr99963 10 128804375 to 128804395 20 - TSS region transcription start site region 99963
Tssr99964 10 128804408 to 128804446 38 - TSS region transcription start site region 99964
Tssr99965 10 128804455 to 128804470 15 - TSS region transcription start site region 99965
Tssr96451 10 128804755 to 128804782 27 + TSS region transcription start site region 96451
Cpgi2420 10 128804829 to 128805820 991 CpG island CpG island 2420
Tssr96452 10 128805011 to 128805032 21 + TSS region transcription start site region 96452
Tssr3401 10 128805330 to 128805351 21 - TSS region transcription start site region 3401
Tssr99966 10 128805359 to 128805391 32 - TSS region transcription start site region 99966
Dnajc14 10 128805523 to 128819446 13923 + protein coding gene DnaJ heat shock protein family (Hsp40) member C14
Tssr96453 10 128805529 to 128805590 61 + TSS region transcription start site region 96453
Tssr96454 10 128805592 to 128805651 59 + TSS region transcription start site region 96454
Tssr96455 10 128805652 to 128805694 42 + TSS region transcription start site region 96455
Tssr96456 10 128805794 to 128805806 12 + TSS region transcription start site region 96456
Ormdl2 10 128817902 to 128821645 3743 - protein coding gene ORM1-like 2 (S. cerevisiae)
Sarnp 10 128819650 to 128877638 57988 + protein coding gene SAP domain containing ribonucleoprotein
Tssr96457 10 128819670 to 128819674 4 + TSS region transcription start site region 96457
Cpgi2421 10 128821454 to 128822167 713 CpG island CpG island 2421
Tssr99967 10 128821576 to 128821632 56 - TSS region transcription start site region 99967
Tssr96458 10 128821726 to 128821737 11 + TSS region transcription start site region 96458
Tssr96459 10 128821745 to 128821773 28 + TSS region transcription start site region 96459
Tssr96460 10 128821784 to 128821800 16 + TSS region transcription start site region 96460
Tssr96461 10 128821887 to 128821913 26 + TSS region transcription start site region 96461
Tssr96462 10 128831265 to 128831298 33 + TSS region transcription start site region 96462
Tssr96463 10 128861425 to 128861475 50 + TSS region transcription start site region 96463
Tssr96464 10 128861970 to 128861993 23 + TSS region transcription start site region 96464
Tssr99968 10 128882976 to 128882980 4 - TSS region transcription start site region 99968
Gdf11 10 128884546 to 128891718 7172 - protein coding gene growth differentiation factor 11
Cpgi2422 10 128890713 to 128892378 1665 CpG island CpG island 2422
Tssr99969 10 128891674 to 128891715 41 - TSS region transcription start site region 99969
Tssr99970 10 128891863 to 128891878 15 - TSS region transcription start site region 99970
Tssr96465 10 128896235 to 128896246 11 + TSS region transcription start site region 96465
Tssr96466 10 128896247 to 128896258 11 + TSS region transcription start site region 96466
Tssr96467 10 128900329 to 128900361 32 + TSS region transcription start site region 96467
Tssr96468 10 128900964 to 128900975 11 + TSS region transcription start site region 96468
Tssr96469 10 128908907 to 128908925 18 + TSS region transcription start site region 96469
Cd63 10 128908919 to 128912822 3903 + protein coding gene CD63 antigen
Tssr96470 10 128908966 to 128908978 12 + TSS region transcription start site region 96470
Tssr96471 10 128908996 to 128909027 31 + TSS region transcription start site region 96471
Tssr96472 10 128909404 to 128909429 25 + TSS region transcription start site region 96472
Tssr96473 10 128909430 to 128909443 13 + TSS region transcription start site region 96473
Cpgi2423 10 128909433 to 128910858 1425 CpG island CpG island 2423
Tssr96474 10 128909629 to 128909636 7 + TSS region transcription start site region 96474
Tssr96475 10 128909869 to 128909873 4 + TSS region transcription start site region 96475
Tssr96476 10 128909895 to 128909930 35 + TSS region transcription start site region 96476
Tssr96477 10 128911473 to 128911518 45 + TSS region transcription start site region 96477
Tssr96478 10 128911569 to 128911598 29 + TSS region transcription start site region 96478
Rdh5 10 128913588 to 128919297 5709 - protein coding gene retinol dehydrogenase 5
Tssr99971 10 128919173 to 128919184 11 - TSS region transcription start site region 99971
Tssr99972 10 128919190 to 128919227 37 - TSS region transcription start site region 99972
Bloc1s1 10 128919220 to 128923550 4330 - protein coding gene biogenesis of lysosomal organelles complex-1, subunit 1
Tssr99973 10 128919248 to 128919253 5 - TSS region transcription start site region 99973
Tssr99974 10 128919259 to 128919305 46 - TSS region transcription start site region 99974
Tssr96479 10 128922583 to 128922597 14 + TSS region transcription start site region 96479
Tssr99975 10 128922978 to 128923069 91 - TSS region transcription start site region 99975
Cpgi2424 10 128922989 to 128923705 716 CpG island CpG island 2424
Tssr99976 10 128923439 to 128923545 106 - TSS region transcription start site region 99976
Tssr99977 10 128923948 to 128923957 9 - TSS region transcription start site region 99977
Tssr96480 10 128933751 to 128933763 12 + TSS region transcription start site region 96480
Cpgi2425 10 128933751 to 128934264 513 CpG island CpG island 2425
Tssr96481 10 128933776 to 128933781 5 + TSS region transcription start site region 96481
Tssr96482 10 128933782 to 128933828 46 + TSS region transcription start site region 96482
Itga7 10 128933818 to 128958282 24464 + protein coding gene integrin alpha 7
Gm46186 10 128935998 to 128949026 13028 - lncRNA gene predicted gene, 46186
Tssr96483 10 128940683 to 128940694 11 + TSS region transcription start site region 96483
Gm25494 10 128944905 to 128945004 99 + snRNA gene predicted gene, 25494
D10Mit269 10 128954267 to 128954362 95 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 269
Mettl7b 10 128958277 to 128960988 2711 - protein coding gene methyltransferase like 7B
Tssr99978 10 128958805 to 128958816 11 - TSS region transcription start site region 99978
Tssr99979 10 128958945 to 128958954 9 - TSS region transcription start site region 99979
D10Utsw1 10 128959290 to 128959450 160 DNA segment DNA segment, Chr 10, University of Texas Southwestern 1
Tssr99980 10 128960612 to 128960639 27 - TSS region transcription start site region 99980
Tssr99981 10 128960671 to 128960695 24 - TSS region transcription start site region 99981