Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:128457712-129027719

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264 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2400 10 128458390 to 128460065 1675 CpG island CpG island 2400
n-TScga2 10 128458464 to 128458545 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon CGA)
Mir8105 10 128458680 to 128458768 88 + miRNA gene microRNA 8105
Tssr96417 10 128458968 to 128458989 21 + TSS region transcription start site region 96417
Tssr96418 10 128459209 to 128459220 11 + TSS region transcription start site region 96418
Tssr96419 10 128459239 to 128459248 9 + TSS region transcription start site region 96419
Smarcc2 10 128459248 to 128490482 31234 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
Tssr96420 10 128459259 to 128459277 18 + TSS region transcription start site region 96420
Tssr96421 10 128459290 to 128459328 38 + TSS region transcription start site region 96421
Tssr96422 10 128459568 to 128459609 41 + TSS region transcription start site region 96422
Tssr96423 10 128459734 to 128459763 29 + TSS region transcription start site region 96423
Tssr96424 10 128469278 to 128469288 10 + TSS region transcription start site region 96424
Tssr96425 10 128474566 to 128474577 11 + TSS region transcription start site region 96425
Tssr96426 10 128485021 to 128485028 7 + TSS region transcription start site region 96426
Tssr96427 10 128488010 to 128488023 13 + TSS region transcription start site region 96427
Tssr96428 10 128489083 to 128489120 37 + TSS region transcription start site region 96428
Myl6 10 128490859 to 128493886 3027 - protein coding gene myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
Tssr3399 10 128492894 to 128492901 7 - TSS region transcription start site region 3399
Tssr99873 10 128492903 to 128492914 11 - TSS region transcription start site region 99873
Tssr99874 10 128492955 to 128492967 12 - TSS region transcription start site region 99874
Tssr99875 10 128492971 to 128493034 63 - TSS region transcription start site region 99875
Tssr99876 10 128493472 to 128493489 17 - TSS region transcription start site region 99876
Tssr99877 10 128493522 to 128493552 30 - TSS region transcription start site region 99877
Cpgi2401 10 128493806 to 128494006 200 CpG island CpG island 2401
Tssr99878 10 128493834 to 128493908 74 - TSS region transcription start site region 99878
Tssr99879 10 128494136 to 128494151 15 - TSS region transcription start site region 99879
Myl6b 10 128494157 to 128498685 4528 - protein coding gene myosin, light polypeptide 6B
Tssr96429 10 128494313 to 128494368 55 + TSS region transcription start site region 96429
Cpgi2402 10 128494320 to 128494518 198 CpG island CpG island 2402
Tssr99880 10 128497389 to 128497404 15 - TSS region transcription start site region 99880
Tssr99881 10 128498647 to 128498675 28 - TSS region transcription start site region 99881
Cpgi2403 10 128498649 to 128499154 505 CpG island CpG island 2403
Tssr99882 10 128498676 to 128498709 33 - TSS region transcription start site region 99882
Tssr96430 10 128498770 to 128498819 49 + TSS region transcription start site region 96430
Tssr96431 10 128498957 to 128498996 39 + TSS region transcription start site region 96431
Cpgi2404 10 128499189 to 128499440 251 CpG island CpG island 2404
Tssr96432 10 128499235 to 128499259 24 + TSS region transcription start site region 96432
A430046D13Rik 10 128499364 to 128504242 4878 + lincRNA gene Riken cDNA A430046D13 gene
Tssr96433 10 128499408 to 128499445 37 + TSS region transcription start site region 96433
Tssr96434 10 128501292 to 128501295 3 + TSS region transcription start site region 96434
Esyt1 10 128510248 to 128525859 15611 - protein coding gene extended synaptotagmin-like protein 1
Mir6916 10 128511968 to 128512030 62 - miRNA gene microRNA 6916
Cpgi2405 10 128516148 to 128516416 268 CpG island CpG island 2405
Tssr99883 10 128517280 to 128517316 36 - TSS region transcription start site region 99883
Tssr99884 10 128518533 to 128518535 2 - TSS region transcription start site region 99884
Tssr99885 10 128520736 to 128520748 12 - TSS region transcription start site region 99885
Gm29585 10 128522263 to 128545359 23096 + antisense lncRNA gene predicted gene 29585
Tssr99886 10 128522465 to 128522480 15 - TSS region transcription start site region 99886
Cpgi2406 10 128524706 to 128526266 1560 CpG island CpG island 2406
Tssr99887 10 128525861 to 128525880 19 - TSS region transcription start site region 99887
Zc3h10 10 128543563 to 128547744 4181 - protein coding gene zinc finger CCCH type containing 10
Cpgi2407 10 128547162 to 128548125 963 CpG island CpG island 2407
Tssr99888 10 128547416 to 128547448 32 - TSS region transcription start site region 99888
Tssr99889 10 128547722 to 128547768 46 - TSS region transcription start site region 99889
Rpl41 10 128548110 to 128549168 1058 - protein coding gene ribosomal protein L41
Cpgi2408 10 128548855 to 128549286 431 CpG island CpG island 2408
Tssr99890 10 128549103 to 128549121 18 - TSS region transcription start site region 99890
Tssr99891 10 128549125 to 128549170 45 - TSS region transcription start site region 99891
Gm9176 10 128549694 to 128550813 1119 - pseudogene predicted gene 9176
Tssr99892 10 128551756 to 128551759 3 - TSS region transcription start site region 99892
Pa2g4 10 128557766 to 128565934 8168 - protein coding gene proliferation-associated 2G4
Gm47275 10 128559201 to 128559319 118 - miRNA gene predicted gene, 47275
Tssr99893 10 128559300 to 128559328 28 - TSS region transcription start site region 99893
Tssr99894 10 128562872 to 128562906 34 - TSS region transcription start site region 99894
Cpgi2409 10 128565135 to 128566569 1434 CpG island CpG island 2409
Tssr99895 10 128565904 to 128565999 95 - TSS region transcription start site region 99895
Tssr99896 10 128566004 to 128566019 15 - TSS region transcription start site region 99896
Tssr99897 10 128566213 to 128566253 40 - TSS region transcription start site region 99897
Tssr99898 10 128568665 to 128568688 23 - TSS region transcription start site region 99898
Erbb3 10 128569368 to 128589501 20133 - protein coding gene erb-b2 receptor tyrosine kinase 3
Tssr99899 10 128578469 to 128578505 36 - TSS region transcription start site region 99899
Tssr99900 10 128583757 to 128583800 43 - TSS region transcription start site region 99900
Mir6917 10 128584437 to 128584497 60 - miRNA gene microRNA 6917
Cpgi2410 10 128589197 to 128590669 1472 CpG island CpG island 2410
Tssr99901 10 128589622 to 128589642 20 - TSS region transcription start site region 99901
Tssr99902 10 128589650 to 128589673 23 - TSS region transcription start site region 99902
Tssr99903 10 128589679 to 128589694 15 - TSS region transcription start site region 99903
Tssr99904 10 128589925 to 128589946 21 - TSS region transcription start site region 99904
Gm47540 10 128595615 to 128598623 3008 + lincRNA gene predicted gene, 47540
Gm9182 10 128615401 to 128616039 638 + pseudogene predicted gene 9182
Rps26 10 128624529 to 128626506 1977 - protein coding gene ribosomal protein S26
Cpgi2411 10 128625998 to 128626571 573 CpG island CpG island 2411
Tssr99905 10 128626421 to 128626443 22 - TSS region transcription start site region 99905
Tssr99906 10 128626453 to 128626458 5 - TSS region transcription start site region 99906
Tssr99907 10 128626464 to 128626520 56 - TSS region transcription start site region 99907
Tssr99908 10 128626532 to 128626537 5 - TSS region transcription start site region 99908
Tssr99909 10 128626554 to 128626556 2 - TSS region transcription start site region 99909
Tssr99910 10 128626672 to 128626689 17 - TSS region transcription start site region 99910
Tssr99911 10 128626696 to 128626715 19 - TSS region transcription start site region 99911
Tssr99912 10 128626723 to 128626740 17 - TSS region transcription start site region 99912
Tssr99913 10 128626751 to 128626767 16 - TSS region transcription start site region 99913
Ikzf4 10 128630843 to 128645991 15148 - protein coding gene IKAROS family zinc finger 4
Tssr96435 10 128637393 to 128637420 27 + TSS region transcription start site region 96435
Tssr99914 10 128642928 to 128642941 13 - TSS region transcription start site region 99914
Cpgi2412 10 128645672 to 128646194 522 CpG island CpG island 2412
Tssr99915 10 128645784 to 128645816 32 - TSS region transcription start site region 99915
Gm26876 10 128645840 to 128647800 1960 + lincRNA gene predicted gene, 26876
Tssr99916 10 128645965 to 128645988 23 - TSS region transcription start site region 99916
Gm49782 10 128651259 to 128669315 18056 - lincRNA gene predicted gene, 49782
Cpgi2413 10 128668877 to 128669327 450 CpG island CpG island 2413
Tssr99917 10 128669227 to 128669240 13 - TSS region transcription start site region 99917
Suox 10 128669887 to 128673918 4031 - protein coding gene sulfite oxidase
Tssr99918 10 128670563 to 128670566 3 - TSS region transcription start site region 99918
Tssr99919 10 128670753 to 128670754 1 - TSS region transcription start site region 99919
Tssr99920 10 128672299 to 128672309 10 - TSS region transcription start site region 99920
Cpgi2414 10 128673678 to 128674428 750 CpG island CpG island 2414
Tssr99921 10 128673869 to 128673888 19 - TSS region transcription start site region 99921
Tssr99922 10 128673896 to 128673925 29 - TSS region transcription start site region 99922
Gm6336 10 128676111 to 128676738 627 - pseudogene predicted pseudogene 6336
Tssr99923 10 128676731 to 128676740 9 - TSS region transcription start site region 99923
Rab5b 10 128677175 to 128696264 19089 - protein coding gene RAB5B, member RAS oncogene family
Cpgi2415 10 128695739 to 128696598 859 CpG island CpG island 2415
Tssr99924 10 128695991 to 128696003 12 - TSS region transcription start site region 99924
Tssr99925 10 128696010 to 128696065 55 - TSS region transcription start site region 99925
Tssr99926 10 128696183 to 128696190 7 - TSS region transcription start site region 99926
Tssr99927 10 128696214 to 128696256 42 - TSS region transcription start site region 99927
Tssr99928 10 128696257 to 128696273 16 - TSS region transcription start site region 99928
Cdk2 10 128697939 to 128705031 7092 - protein coding gene cyclin-dependent kinase 2
Tssr99929 10 128698101 to 128698106 5 - TSS region transcription start site region 99929
Tssr3400 10 128704180 to 128704186 6 + TSS region transcription start site region 3400
Tssr99930 10 128704285 to 128704311 26 - TSS region transcription start site region 99930
Cpgi2416 10 128704419 to 128705262 843 CpG island CpG island 2416
Tssr99931 10 128704947 to 128704975 28 - TSS region transcription start site region 99931
Tssr99932 10 128704978 to 128705049 71 - TSS region transcription start site region 99932
Pmel 10 128705144 to 128720238 15094 + protein coding gene premelanosome protein
Tssr96436 10 128705174 to 128705209 35 + TSS region transcription start site region 96436
Tssr96437 10 128706251 to 128706264 13 + TSS region transcription start site region 96437
Tssr96438 10 128720134 to 128720145 11 + TSS region transcription start site region 96438
Dgka 10 128720134 to 128744855 24721 - protein coding gene diacylglycerol kinase, alpha
Tssr96439 10 128720234 to 128720255 21 + TSS region transcription start site region 96439
Tssr99933 10 128720321 to 128720337 16 - TSS region transcription start site region 99933
Tssr99934 10 128720713 to 128720716 3 - TSS region transcription start site region 99934
Tssr99935 10 128721219 to 128721223 4 - TSS region transcription start site region 99935
Tssr99936 10 128734447 to 128734452 5 - TSS region transcription start site region 99936
Cpgi2417 10 128737541 to 128737733 192 CpG island CpG island 2417
Tssr99937 10 128737576 to 128737589 13 - TSS region transcription start site region 99937
Tssr99938 10 128737598 to 128737616 18 - TSS region transcription start site region 99938
Tssr99939 10 128740099 to 128740109 10 - TSS region transcription start site region 99939
Tssr99940 10 128742712 to 128742719 7 - TSS region transcription start site region 99940
Cpgi2418 10 128743597 to 128744223 626 CpG island CpG island 2418
Tssr99941 10 128743833 to 128743845 12 - TSS region transcription start site region 99941
Tssr99942 10 128743869 to 128743910 41 - TSS region transcription start site region 99942
Tssr99943 10 128743961 to 128743972 11 - TSS region transcription start site region 99943
Tssr99944 10 128743984 to 128743995 11 - TSS region transcription start site region 99944
Tssr99945 10 128744014 to 128744085 71 - TSS region transcription start site region 99945
Tssr99946 10 128744091 to 128744109 18 - TSS region transcription start site region 99946
Tssr99947 10 128744240 to 128744252 12 - TSS region transcription start site region 99947
Tssr99948 10 128744265 to 128744282 17 - TSS region transcription start site region 99948
Tssr96440 10 128744793 to 128744822 29 + TSS region transcription start site region 96440
Tssr99949 10 128744846 to 128744887 41 - TSS region transcription start site region 99949
Tssr96441 10 128744937 to 128745023 86 + TSS region transcription start site region 96441
Gm31504 10 128745034 to 128745882 848 + lncRNA gene predicted gene, 31504
Tssr99950 10 128745046 to 128745058 12 - TSS region transcription start site region 99950
Tssr99951 10 128745069 to 128745081 12 - TSS region transcription start site region 99951
Tssr99952 10 128745082 to 128745085 3 - TSS region transcription start site region 99952
Tssr99953 10 128745087 to 128745122 35 - TSS region transcription start site region 99953
Tssr96442 10 128745193 to 128745234 41 + TSS region transcription start site region 96442
Tssr99954 10 128745445 to 128745466 21 - TSS region transcription start site region 99954
Tssr99955 10 128745478 to 128745499 21 - TSS region transcription start site region 99955
Tssr99956 10 128746233 to 128746252 19 - TSS region transcription start site region 99956
Tssr99957 10 128746300 to 128746312 12 - TSS region transcription start site region 99957
Tssr96443 10 128746457 to 128746474 17 + TSS region transcription start site region 96443
Tssr99958 10 128747628 to 128747645 17 - TSS region transcription start site region 99958
Cpgi2419 10 128747702 to 128748742 1040 CpG island CpG island 2419
Tssr99959 10 128747720 to 128747744 24 - TSS region transcription start site region 99959
Tssr96444 10 128747788 to 128747799 11 + TSS region transcription start site region 96444
Tssr96445 10 128747850 to 128747895 45 + TSS region transcription start site region 96445
Pym1 10 128747889 to 128766564 18675 + protein coding gene PYM homolog 1, exon junction complex associated factor
Tssr96446 10 128748501 to 128748538 37 + TSS region transcription start site region 96446
Tssr96447 10 128748751 to 128748783 32 + TSS region transcription start site region 96447
Rpsa-ps2 10 128776371 to 128777250 879 - pseudogene ribosomal protein SA, pseudogene 2
Gm47093 10 128789429 to 128801393 11964 - antisense lncRNA gene predicted gene, 47093
Tssr96448 10 128790903 to 128790968 65 + TSS region transcription start site region 96448
Mmp19 10 128790910 to 128800824 9914 + protein coding gene matrix metallopeptidase 19
Tssr96449 10 128798942 to 128798979 37 + TSS region transcription start site region 96449
Tssr96450 10 128799957 to 128799991 34 + TSS region transcription start site region 96450
Tmem198b 10 128800036 to 128804370 4334 - protein coding gene transmembrane protein 198b
Tssr99960 10 128803946 to 128803995 49 - TSS region transcription start site region 99960
Tssr99961 10 128804144 to 128804157 13 - TSS region transcription start site region 99961
Tssr99962 10 128804353 to 128804374 21 - TSS region transcription start site region 99962
Tssr99963 10 128804375 to 128804395 20 - TSS region transcription start site region 99963
Tssr99964 10 128804408 to 128804446 38 - TSS region transcription start site region 99964
Tssr99965 10 128804455 to 128804470 15 - TSS region transcription start site region 99965
Tssr96451 10 128804755 to 128804782 27 + TSS region transcription start site region 96451
Cpgi2420 10 128804829 to 128805820 991 CpG island CpG island 2420
Tssr96452 10 128805011 to 128805032 21 + TSS region transcription start site region 96452
Tssr3401 10 128805330 to 128805351 21 - TSS region transcription start site region 3401
Tssr99966 10 128805359 to 128805391 32 - TSS region transcription start site region 99966
Dnajc14 10 128805523 to 128819446 13923 + protein coding gene DnaJ heat shock protein family (Hsp40) member C14
Tssr96453 10 128805529 to 128805590 61 + TSS region transcription start site region 96453
Tssr96454 10 128805592 to 128805651 59 + TSS region transcription start site region 96454
Tssr96455 10 128805652 to 128805694 42 + TSS region transcription start site region 96455
Tssr96456 10 128805794 to 128805806 12 + TSS region transcription start site region 96456
Ormdl2 10 128817902 to 128821645 3743 - protein coding gene ORM1-like 2 (S. cerevisiae)
Sarnp 10 128819650 to 128877638 57988 + protein coding gene SAP domain containing ribonucleoprotein
Tssr96457 10 128819670 to 128819674 4 + TSS region transcription start site region 96457
Cpgi2421 10 128821454 to 128822167 713 CpG island CpG island 2421
Tssr99967 10 128821576 to 128821632 56 - TSS region transcription start site region 99967
Tssr96458 10 128821726 to 128821737 11 + TSS region transcription start site region 96458
Tssr96459 10 128821745 to 128821773 28 + TSS region transcription start site region 96459