Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:128448680-130709442

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390 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frct3c 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3c
Frct3 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3
Frct3a 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3a
Opfaq10 10 125797802 to 129630506 3832704 QTL open field activity QTL 10
Frct3b 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3b
Frct3d 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3d
Opfaq7 10 127910449 to 129630506 1720057 QTL open field activity QTL 7
Tssr99872 10 128455570 to 128455574 4 - TSS region transcription start site region 99872
Cpgi2400 10 128458390 to 128460065 1675 CpG island CpG island 2400
n-TScga2 10 128458464 to 128458545 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon CGA)
Mir8105 10 128458680 to 128458768 88 + miRNA gene microRNA 8105
Tssr96417 10 128458968 to 128458989 21 + TSS region transcription start site region 96417
Tssr96418 10 128459209 to 128459220 11 + TSS region transcription start site region 96418
Tssr96419 10 128459239 to 128459248 9 + TSS region transcription start site region 96419
Smarcc2 10 128459248 to 128490482 31234 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
Tssr96420 10 128459259 to 128459277 18 + TSS region transcription start site region 96420
Tssr96421 10 128459290 to 128459328 38 + TSS region transcription start site region 96421
Tssr96422 10 128459568 to 128459609 41 + TSS region transcription start site region 96422
Tssr96423 10 128459734 to 128459763 29 + TSS region transcription start site region 96423
Tssr96424 10 128469278 to 128469288 10 + TSS region transcription start site region 96424
Tssr96425 10 128474566 to 128474577 11 + TSS region transcription start site region 96425
Tssr96426 10 128485021 to 128485028 7 + TSS region transcription start site region 96426
Tssr96427 10 128488010 to 128488023 13 + TSS region transcription start site region 96427
Tssr96428 10 128489083 to 128489120 37 + TSS region transcription start site region 96428
Myl6 10 128490859 to 128493886 3027 - protein coding gene myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
Tssr3399 10 128492894 to 128492901 7 - TSS region transcription start site region 3399
Tssr99873 10 128492903 to 128492914 11 - TSS region transcription start site region 99873
Tssr99874 10 128492955 to 128492967 12 - TSS region transcription start site region 99874
Tssr99875 10 128492971 to 128493034 63 - TSS region transcription start site region 99875
Tssr99876 10 128493472 to 128493489 17 - TSS region transcription start site region 99876
Tssr99877 10 128493522 to 128493552 30 - TSS region transcription start site region 99877
Cpgi2401 10 128493806 to 128494006 200 CpG island CpG island 2401
Tssr99878 10 128493834 to 128493908 74 - TSS region transcription start site region 99878
Tssr99879 10 128494136 to 128494151 15 - TSS region transcription start site region 99879
Myl6b 10 128494157 to 128498685 4528 - protein coding gene myosin, light polypeptide 6B
Tssr96429 10 128494313 to 128494368 55 + TSS region transcription start site region 96429
Cpgi2402 10 128494320 to 128494518 198 CpG island CpG island 2402
Tssr99880 10 128497389 to 128497404 15 - TSS region transcription start site region 99880
Tssr99881 10 128498647 to 128498675 28 - TSS region transcription start site region 99881
Cpgi2403 10 128498649 to 128499154 505 CpG island CpG island 2403
Tssr99882 10 128498676 to 128498709 33 - TSS region transcription start site region 99882
Tssr96430 10 128498770 to 128498819 49 + TSS region transcription start site region 96430
Tssr96431 10 128498957 to 128498996 39 + TSS region transcription start site region 96431
Cpgi2404 10 128499189 to 128499440 251 CpG island CpG island 2404
Tssr96432 10 128499235 to 128499259 24 + TSS region transcription start site region 96432
A430046D13Rik 10 128499364 to 128504242 4878 + lincRNA gene Riken cDNA A430046D13 gene
Tssr96433 10 128499408 to 128499445 37 + TSS region transcription start site region 96433
Tssr96434 10 128501292 to 128501295 3 + TSS region transcription start site region 96434
Esyt1 10 128510248 to 128525859 15611 - protein coding gene extended synaptotagmin-like protein 1
Mir6916 10 128511968 to 128512030 62 - miRNA gene microRNA 6916
Cpgi2405 10 128516148 to 128516416 268 CpG island CpG island 2405
Tssr99883 10 128517280 to 128517316 36 - TSS region transcription start site region 99883
Tssr99884 10 128518533 to 128518535 2 - TSS region transcription start site region 99884
Tssr99885 10 128520736 to 128520748 12 - TSS region transcription start site region 99885
Gm29585 10 128522263 to 128545359 23096 + antisense lncRNA gene predicted gene 29585
Tssr99886 10 128522465 to 128522480 15 - TSS region transcription start site region 99886
Cpgi2406 10 128524706 to 128526266 1560 CpG island CpG island 2406
Tssr99887 10 128525861 to 128525880 19 - TSS region transcription start site region 99887
Zc3h10 10 128543563 to 128547744 4181 - protein coding gene zinc finger CCCH type containing 10
Cpgi2407 10 128547162 to 128548125 963 CpG island CpG island 2407
Tssr99888 10 128547416 to 128547448 32 - TSS region transcription start site region 99888
Tssr99889 10 128547722 to 128547768 46 - TSS region transcription start site region 99889
Rpl41 10 128548110 to 128549168 1058 - protein coding gene ribosomal protein L41
Cpgi2408 10 128548855 to 128549286 431 CpG island CpG island 2408
Tssr99890 10 128549103 to 128549121 18 - TSS region transcription start site region 99890
Tssr99891 10 128549125 to 128549170 45 - TSS region transcription start site region 99891
Gm9176 10 128549694 to 128550813 1119 - pseudogene predicted gene 9176
Tssr99892 10 128551756 to 128551759 3 - TSS region transcription start site region 99892
Pa2g4 10 128557766 to 128565934 8168 - protein coding gene proliferation-associated 2G4
Gm47275 10 128559201 to 128559319 118 - miRNA gene predicted gene, 47275
Tssr99893 10 128559300 to 128559328 28 - TSS region transcription start site region 99893
Tssr99894 10 128562872 to 128562906 34 - TSS region transcription start site region 99894
Cpgi2409 10 128565135 to 128566569 1434 CpG island CpG island 2409
Tssr99895 10 128565904 to 128565999 95 - TSS region transcription start site region 99895
Tssr99896 10 128566004 to 128566019 15 - TSS region transcription start site region 99896
Tssr99897 10 128566213 to 128566253 40 - TSS region transcription start site region 99897
Tssr99898 10 128568665 to 128568688 23 - TSS region transcription start site region 99898
Erbb3 10 128569368 to 128589501 20133 - protein coding gene erb-b2 receptor tyrosine kinase 3
Tssr99899 10 128578469 to 128578505 36 - TSS region transcription start site region 99899
Tssr99900 10 128583757 to 128583800 43 - TSS region transcription start site region 99900
Mir6917 10 128584437 to 128584497 60 - miRNA gene microRNA 6917
Cpgi2410 10 128589197 to 128590669 1472 CpG island CpG island 2410
Tssr99901 10 128589622 to 128589642 20 - TSS region transcription start site region 99901
Tssr99902 10 128589650 to 128589673 23 - TSS region transcription start site region 99902
Tssr99903 10 128589679 to 128589694 15 - TSS region transcription start site region 99903
Tssr99904 10 128589925 to 128589946 21 - TSS region transcription start site region 99904
Gm47540 10 128595615 to 128598623 3008 + lincRNA gene predicted gene, 47540
Gm9182 10 128615401 to 128616039 638 + pseudogene predicted gene 9182
Rps26 10 128624529 to 128626506 1977 - protein coding gene ribosomal protein S26
Cpgi2411 10 128625998 to 128626571 573 CpG island CpG island 2411
Tssr99905 10 128626421 to 128626443 22 - TSS region transcription start site region 99905
Tssr99906 10 128626453 to 128626458 5 - TSS region transcription start site region 99906
Tssr99907 10 128626464 to 128626520 56 - TSS region transcription start site region 99907
Tssr99908 10 128626532 to 128626537 5 - TSS region transcription start site region 99908
Tssr99909 10 128626554 to 128626556 2 - TSS region transcription start site region 99909
Tssr99910 10 128626672 to 128626689 17 - TSS region transcription start site region 99910
Tssr99911 10 128626696 to 128626715 19 - TSS region transcription start site region 99911
Tssr99912 10 128626723 to 128626740 17 - TSS region transcription start site region 99912
Tssr99913 10 128626751 to 128626767 16 - TSS region transcription start site region 99913
Ikzf4 10 128630843 to 128645991 15148 - protein coding gene IKAROS family zinc finger 4
Tssr96435 10 128637393 to 128637420 27 + TSS region transcription start site region 96435
Tssr99914 10 128642928 to 128642941 13 - TSS region transcription start site region 99914
Cpgi2412 10 128645672 to 128646194 522 CpG island CpG island 2412
Tssr99915 10 128645784 to 128645816 32 - TSS region transcription start site region 99915
Gm26876 10 128645840 to 128647800 1960 + lincRNA gene predicted gene, 26876
Tssr99916 10 128645965 to 128645988 23 - TSS region transcription start site region 99916
Gm49782 10 128651259 to 128669315 18056 - lincRNA gene predicted gene, 49782
Cpgi2413 10 128668877 to 128669327 450 CpG island CpG island 2413
Tssr99917 10 128669227 to 128669240 13 - TSS region transcription start site region 99917
Suox 10 128669887 to 128673918 4031 - protein coding gene sulfite oxidase
Tssr99918 10 128670563 to 128670566 3 - TSS region transcription start site region 99918
Tssr99919 10 128670753 to 128670754 1 - TSS region transcription start site region 99919
Tssr99920 10 128672299 to 128672309 10 - TSS region transcription start site region 99920
Cpgi2414 10 128673678 to 128674428 750 CpG island CpG island 2414
Tssr99921 10 128673869 to 128673888 19 - TSS region transcription start site region 99921
Tssr99922 10 128673896 to 128673925 29 - TSS region transcription start site region 99922
Gm6336 10 128676111 to 128676738 627 - pseudogene predicted pseudogene 6336
Tssr99923 10 128676731 to 128676740 9 - TSS region transcription start site region 99923
Rab5b 10 128677175 to 128696264 19089 - protein coding gene RAB5B, member RAS oncogene family
Cpgi2415 10 128695739 to 128696598 859 CpG island CpG island 2415
Tssr99924 10 128695991 to 128696003 12 - TSS region transcription start site region 99924
Tssr99925 10 128696010 to 128696065 55 - TSS region transcription start site region 99925
Tssr99926 10 128696183 to 128696190 7 - TSS region transcription start site region 99926
Tssr99927 10 128696214 to 128696256 42 - TSS region transcription start site region 99927
Tssr99928 10 128696257 to 128696273 16 - TSS region transcription start site region 99928
Cdk2 10 128697939 to 128705031 7092 - protein coding gene cyclin-dependent kinase 2
Tssr99929 10 128698101 to 128698106 5 - TSS region transcription start site region 99929
Tssr3400 10 128704180 to 128704186 6 + TSS region transcription start site region 3400
Tssr99930 10 128704285 to 128704311 26 - TSS region transcription start site region 99930
Cpgi2416 10 128704419 to 128705262 843 CpG island CpG island 2416
Tssr99931 10 128704947 to 128704975 28 - TSS region transcription start site region 99931
Tssr99932 10 128704978 to 128705049 71 - TSS region transcription start site region 99932
Pmel 10 128705144 to 128720238 15094 + protein coding gene premelanosome protein
Tssr96436 10 128705174 to 128705209 35 + TSS region transcription start site region 96436
Tssr96437 10 128706251 to 128706264 13 + TSS region transcription start site region 96437
Dgka 10 128720134 to 128744855 24721 - protein coding gene diacylglycerol kinase, alpha
Tssr96438 10 128720134 to 128720145 11 + TSS region transcription start site region 96438
Tssr96439 10 128720234 to 128720255 21 + TSS region transcription start site region 96439
Tssr99933 10 128720321 to 128720337 16 - TSS region transcription start site region 99933
Tssr99934 10 128720713 to 128720716 3 - TSS region transcription start site region 99934
Tssr99935 10 128721219 to 128721223 4 - TSS region transcription start site region 99935
Tssr99936 10 128734447 to 128734452 5 - TSS region transcription start site region 99936
Cpgi2417 10 128737541 to 128737733 192 CpG island CpG island 2417
Tssr99937 10 128737576 to 128737589 13 - TSS region transcription start site region 99937
Tssr99938 10 128737598 to 128737616 18 - TSS region transcription start site region 99938
Tssr99939 10 128740099 to 128740109 10 - TSS region transcription start site region 99939
Tssr99940 10 128742712 to 128742719 7 - TSS region transcription start site region 99940
Cpgi2418 10 128743597 to 128744223 626 CpG island CpG island 2418
Tssr99941 10 128743833 to 128743845 12 - TSS region transcription start site region 99941
Tssr99942 10 128743869 to 128743910 41 - TSS region transcription start site region 99942
Tssr99943 10 128743961 to 128743972 11 - TSS region transcription start site region 99943
Tssr99944 10 128743984 to 128743995 11 - TSS region transcription start site region 99944
Tssr99945 10 128744014 to 128744085 71 - TSS region transcription start site region 99945
Tssr99946 10 128744091 to 128744109 18 - TSS region transcription start site region 99946
Tssr99947 10 128744240 to 128744252 12 - TSS region transcription start site region 99947
Tssr99948 10 128744265 to 128744282 17 - TSS region transcription start site region 99948
Tssr96440 10 128744793 to 128744822 29 + TSS region transcription start site region 96440
Tssr99949 10 128744846 to 128744887 41 - TSS region transcription start site region 99949
Tssr96441 10 128744937 to 128745023 86 + TSS region transcription start site region 96441
Gm31504 10 128745034 to 128745882 848 + lncRNA gene predicted gene, 31504
Tssr99950 10 128745046 to 128745058 12 - TSS region transcription start site region 99950
Tssr99951 10 128745069 to 128745081 12 - TSS region transcription start site region 99951
Tssr99952 10 128745082 to 128745085 3 - TSS region transcription start site region 99952
Tssr99953 10 128745087 to 128745122 35 - TSS region transcription start site region 99953
Tssr96442 10 128745193 to 128745234 41 + TSS region transcription start site region 96442
Tssr99954 10 128745445 to 128745466 21 - TSS region transcription start site region 99954
Tssr99955 10 128745478 to 128745499 21 - TSS region transcription start site region 99955
Tssr99956 10 128746233 to 128746252 19 - TSS region transcription start site region 99956
Tssr99957 10 128746300 to 128746312 12 - TSS region transcription start site region 99957
Tssr96443 10 128746457 to 128746474 17 + TSS region transcription start site region 96443
Tssr99958 10 128747628 to 128747645 17 - TSS region transcription start site region 99958
Cpgi2419 10 128747702 to 128748742 1040 CpG island CpG island 2419
Tssr99959 10 128747720 to 128747744 24 - TSS region transcription start site region 99959
Tssr96444 10 128747788 to 128747799 11 + TSS region transcription start site region 96444
Tssr96445 10 128747850 to 128747895 45 + TSS region transcription start site region 96445
Pym1 10 128747889 to 128766564 18675 + protein coding gene PYM homolog 1, exon junction complex associated factor
Tssr96446 10 128748501 to 128748538 37 + TSS region transcription start site region 96446
Tssr96447 10 128748751 to 128748783 32 + TSS region transcription start site region 96447
Rpsa-ps2 10 128776371 to 128777250 879 - pseudogene ribosomal protein SA, pseudogene 2
Gm47093 10 128789429 to 128801393 11964 - antisense lncRNA gene predicted gene, 47093
Tssr96448 10 128790903 to 128790968 65 + TSS region transcription start site region 96448
Mmp19 10 128790910 to 128800824 9914 + protein coding gene matrix metallopeptidase 19
Tssr96449 10 128798942 to 128798979 37 + TSS region transcription start site region 96449
Tssr96450 10 128799957 to 128799991 34 + TSS region transcription start site region 96450
Tmem198b 10 128800036 to 128804370 4334 - protein coding gene transmembrane protein 198b
Tssr99960 10 128803946 to 128803995 49 - TSS region transcription start site region 99960
Tssr99961 10 128804144 to 128804157 13 - TSS region transcription start site region 99961
Tssr99962 10 128804353 to 128804374 21 - TSS region transcription start site region 99962
Tssr99963 10 128804375 to 128804395 20 - TSS region transcription start site region 99963
Tssr99964 10 128804408 to 128804446 38 - TSS region transcription start site region 99964
Tssr99965 10 128804455 to 128804470 15 - TSS region transcription start site region 99965
Tssr96451 10 128804755 to 128804782 27 + TSS region transcription start site region 96451
Cpgi2420 10 128804829 to 128805820 991 CpG island CpG island 2420
Tssr96452 10 128805011 to 128805032 21 + TSS region transcription start site region 96452
Tssr3401 10 128805330 to 128805351 21 - TSS region transcription start site region 3401
Tssr99966 10 128805359 to 128805391 32 - TSS region transcription start site region 99966
Dnajc14 10 128805523 to 128819446 13923 + protein coding gene DnaJ heat shock protein family (Hsp40) member C14
Tssr96453 10 128805529 to 128805590 61 + TSS region transcription start site region 96453
Tssr96454 10 128805592 to 128805651 59 + TSS region transcription start site region 96454
Tssr96455 10 128805652 to 128805694 42 + TSS region transcription start site region 96455