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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:128334320-128654518

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154 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2394 10 128337633 to 128338258 625 CpG island CpG island 2394
Tssr96402 10 128337739 to 128337759 20 + TSS region transcription start site region 96402
Tssr96403 10 128337761 to 128337818 57 + TSS region transcription start site region 96403
Cs 10 128337832 to 128362479 24647 + protein coding gene citrate synthase
Tssr96404 10 128337833 to 128337844 11 + TSS region transcription start site region 96404
Tssr99853 10 128337960 to 128337977 17 - TSS region transcription start site region 99853
Gm23182 10 128349241 to 128349375 134 + snoRNA gene predicted gene, 23182
Tssr96405 10 128361293 to 128361341 48 + TSS region transcription start site region 96405
Tssr96406 10 128361388 to 128361406 18 + TSS region transcription start site region 96406
Tssr96407 10 128362114 to 128362133 19 + TSS region transcription start site region 96407
Coq10a 10 128363100 to 128368997 5897 - protein coding gene coenzyme Q10A
Cpgi2395 10 128368083 to 128369415 1332 CpG island CpG island 2395
Tssr99854 10 128368676 to 128368691 15 - TSS region transcription start site region 99854
Tssr99855 10 128368890 to 128368897 7 - TSS region transcription start site region 99855
Tssr99856 10 128368943 to 128369013 70 - TSS region transcription start site region 99856
Tssr99857 10 128369082 to 128369101 19 - TSS region transcription start site region 99857
Tssr99858 10 128369122 to 128369198 76 - TSS region transcription start site region 99858
Tssr96408 10 128376467 to 128376513 46 + TSS region transcription start site region 96408
Cpgi2396 10 128376657 to 128377844 1187 CpG island CpG island 2396
Tssr96409 10 128377086 to 128377155 69 + TSS region transcription start site region 96409
Ankrd52 10 128377124 to 128394006 16882 + protein coding gene ankyrin repeat domain 52
Gm26308 10 128377831 to 128377899 68 - miRNA gene predicted gene, 26308
Mir6914 10 128382838 to 128382906 68 + miRNA gene microRNA 6914
Mir6915 10 128388832 to 128388900 68 + miRNA gene microRNA 6915
Cpgi2397 10 128389257 to 128389412 155 CpG island CpG island 2397
Tssr96410 10 128391264 to 128391266 2 + TSS region transcription start site region 96410
Gm17201 10 128391842 to 128395563 3721 - antisense lncRNA gene predicted gene 17201
Slc39a5 10 128395931 to 128401229 5298 - protein coding gene solute carrier family 39 (metal ion transporter), member 5
Tssr99859 10 128400294 to 128400308 14 - TSS region transcription start site region 99859
Tssr99860 10 128400448 to 128400473 25 - TSS region transcription start site region 99860
Tssr99861 10 128400497 to 128400537 40 - TSS region transcription start site region 99861
Tssr99862 10 128401192 to 128401214 22 - TSS region transcription start site region 99862
Tssr99863 10 128401218 to 128401234 16 - TSS region transcription start site region 99863
Tssr99864 10 128401239 to 128401252 13 - TSS region transcription start site region 99864
Nabp2 10 128401394 to 128411487 10093 - protein coding gene nucleic acid binding protein 2
Tssr99865 10 128401831 to 128401853 22 - TSS region transcription start site region 99865
Tssr99866 10 128401858 to 128401880 22 - TSS region transcription start site region 99866
Gm25361 10 128402758 to 128402833 75 + miRNA gene predicted gene, 25361
Cpgi2398 10 128408936 to 128409970 1034 CpG island CpG island 2398
Tssr99867 10 128409146 to 128409176 30 - TSS region transcription start site region 99867
Tssr99868 10 128409178 to 128409191 13 - TSS region transcription start site region 99868
Tssr99869 10 128409319 to 128409374 55 - TSS region transcription start site region 99869
Tssr99870 10 128409766 to 128409862 96 - TSS region transcription start site region 99870
Tssr99871 10 128410532 to 128410565 33 - TSS region transcription start site region 99871
Cpgi2399 10 128411188 to 128412392 1204 CpG island CpG island 2399
Tssr96411 10 128411623 to 128411676 53 + TSS region transcription start site region 96411
Rnf41 10 128411657 to 128441441 29784 + protein coding gene ring finger protein 41
Tssr96412 10 128411680 to 128411720 40 + TSS region transcription start site region 96412
Tssr96413 10 128411730 to 128411757 27 + TSS region transcription start site region 96413
Tssr96414 10 128413210 to 128413221 11 + TSS region transcription start site region 96414
Tssr96415 10 128415179 to 128415196 17 + TSS region transcription start site region 96415
Tssr96416 10 128428247 to 128428252 5 + TSS region transcription start site region 96416
Gm26347 10 128435914 to 128436044 130 + snoRNA gene predicted gene, 26347
Tssr3398 10 128439149 to 128439162 13 + TSS region transcription start site region 3398
Tssr99872 10 128455570 to 128455574 4 - TSS region transcription start site region 99872
Cpgi2400 10 128458390 to 128460065 1675 CpG island CpG island 2400
n-TScga2 10 128458464 to 128458545 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon CGA)
Mir8105 10 128458680 to 128458768 88 + miRNA gene microRNA 8105
Tssr96417 10 128458968 to 128458989 21 + TSS region transcription start site region 96417
Tssr96418 10 128459209 to 128459220 11 + TSS region transcription start site region 96418
Tssr96419 10 128459239 to 128459248 9 + TSS region transcription start site region 96419
Smarcc2 10 128459248 to 128490482 31234 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
Tssr96420 10 128459259 to 128459277 18 + TSS region transcription start site region 96420
Tssr96421 10 128459290 to 128459328 38 + TSS region transcription start site region 96421
Tssr96422 10 128459568 to 128459609 41 + TSS region transcription start site region 96422
Tssr96423 10 128459734 to 128459763 29 + TSS region transcription start site region 96423
Tssr96424 10 128469278 to 128469288 10 + TSS region transcription start site region 96424
Tssr96425 10 128474566 to 128474577 11 + TSS region transcription start site region 96425
Tssr96426 10 128485021 to 128485028 7 + TSS region transcription start site region 96426
Tssr96427 10 128488010 to 128488023 13 + TSS region transcription start site region 96427
Tssr96428 10 128489083 to 128489120 37 + TSS region transcription start site region 96428
Myl6 10 128490859 to 128493886 3027 - protein coding gene myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
Tssr3399 10 128492894 to 128492901 7 - TSS region transcription start site region 3399
Tssr99873 10 128492903 to 128492914 11 - TSS region transcription start site region 99873
Tssr99874 10 128492955 to 128492967 12 - TSS region transcription start site region 99874
Tssr99875 10 128492971 to 128493034 63 - TSS region transcription start site region 99875
Tssr99876 10 128493472 to 128493489 17 - TSS region transcription start site region 99876
Tssr99877 10 128493522 to 128493552 30 - TSS region transcription start site region 99877
Cpgi2401 10 128493806 to 128494006 200 CpG island CpG island 2401
Tssr99878 10 128493834 to 128493908 74 - TSS region transcription start site region 99878
Tssr99879 10 128494136 to 128494151 15 - TSS region transcription start site region 99879
Myl6b 10 128494157 to 128498685 4528 - protein coding gene myosin, light polypeptide 6B
Tssr96429 10 128494313 to 128494368 55 + TSS region transcription start site region 96429
Cpgi2402 10 128494320 to 128494518 198 CpG island CpG island 2402
Tssr99880 10 128497389 to 128497404 15 - TSS region transcription start site region 99880
Tssr99881 10 128498647 to 128498675 28 - TSS region transcription start site region 99881
Cpgi2403 10 128498649 to 128499154 505 CpG island CpG island 2403
Tssr99882 10 128498676 to 128498709 33 - TSS region transcription start site region 99882
Tssr96430 10 128498770 to 128498819 49 + TSS region transcription start site region 96430
Tssr96431 10 128498957 to 128498996 39 + TSS region transcription start site region 96431
Cpgi2404 10 128499189 to 128499440 251 CpG island CpG island 2404
Tssr96432 10 128499235 to 128499259 24 + TSS region transcription start site region 96432
A430046D13Rik 10 128499364 to 128504242 4878 + lincRNA gene Riken cDNA A430046D13 gene
Tssr96433 10 128499408 to 128499445 37 + TSS region transcription start site region 96433
Tssr96434 10 128501292 to 128501295 3 + TSS region transcription start site region 96434
Esyt1 10 128510248 to 128525859 15611 - protein coding gene extended synaptotagmin-like protein 1
Mir6916 10 128511968 to 128512030 62 - miRNA gene microRNA 6916
Cpgi2405 10 128516148 to 128516416 268 CpG island CpG island 2405
Tssr99883 10 128517280 to 128517316 36 - TSS region transcription start site region 99883
Tssr99884 10 128518533 to 128518535 2 - TSS region transcription start site region 99884
Tssr99885 10 128520736 to 128520748 12 - TSS region transcription start site region 99885
Gm29585 10 128522263 to 128545359 23096 + antisense lncRNA gene predicted gene 29585
Tssr99886 10 128522465 to 128522480 15 - TSS region transcription start site region 99886
Cpgi2406 10 128524706 to 128526266 1560 CpG island CpG island 2406
Tssr99887 10 128525861 to 128525880 19 - TSS region transcription start site region 99887
Zc3h10 10 128543563 to 128547744 4181 - protein coding gene zinc finger CCCH type containing 10
Cpgi2407 10 128547162 to 128548125 963 CpG island CpG island 2407
Tssr99888 10 128547416 to 128547448 32 - TSS region transcription start site region 99888
Tssr99889 10 128547722 to 128547768 46 - TSS region transcription start site region 99889
Rpl41 10 128548110 to 128549168 1058 - protein coding gene ribosomal protein L41
Cpgi2408 10 128548855 to 128549286 431 CpG island CpG island 2408
Tssr99890 10 128549103 to 128549121 18 - TSS region transcription start site region 99890
Tssr99891 10 128549125 to 128549170 45 - TSS region transcription start site region 99891
Gm9176 10 128549694 to 128550813 1119 - pseudogene predicted gene 9176
Tssr99892 10 128551756 to 128551759 3 - TSS region transcription start site region 99892
Pa2g4 10 128557766 to 128565934 8168 - protein coding gene proliferation-associated 2G4
Gm47275 10 128559201 to 128559319 118 - miRNA gene predicted gene, 47275
Tssr99893 10 128559300 to 128559328 28 - TSS region transcription start site region 99893
Tssr99894 10 128562872 to 128562906 34 - TSS region transcription start site region 99894
Cpgi2409 10 128565135 to 128566569 1434 CpG island CpG island 2409
Tssr99895 10 128565904 to 128565999 95 - TSS region transcription start site region 99895
Tssr99896 10 128566004 to 128566019 15 - TSS region transcription start site region 99896
Tssr99897 10 128566213 to 128566253 40 - TSS region transcription start site region 99897
Tssr99898 10 128568665 to 128568688 23 - TSS region transcription start site region 99898
Erbb3 10 128569368 to 128589501 20133 - protein coding gene erb-b2 receptor tyrosine kinase 3
Tssr99899 10 128578469 to 128578505 36 - TSS region transcription start site region 99899
Tssr99900 10 128583757 to 128583800 43 - TSS region transcription start site region 99900
Mir6917 10 128584437 to 128584497 60 - miRNA gene microRNA 6917
Cpgi2410 10 128589197 to 128590669 1472 CpG island CpG island 2410
Tssr99901 10 128589622 to 128589642 20 - TSS region transcription start site region 99901
Tssr99902 10 128589650 to 128589673 23 - TSS region transcription start site region 99902
Tssr99903 10 128589679 to 128589694 15 - TSS region transcription start site region 99903
Tssr99904 10 128589925 to 128589946 21 - TSS region transcription start site region 99904
Gm47540 10 128595615 to 128598623 3008 + lincRNA gene predicted gene, 47540
Gm9182 10 128615401 to 128616039 638 + pseudogene predicted gene 9182
Rps26 10 128624529 to 128626506 1977 - protein coding gene ribosomal protein S26
Cpgi2411 10 128625998 to 128626571 573 CpG island CpG island 2411
Tssr99905 10 128626421 to 128626443 22 - TSS region transcription start site region 99905
Tssr99906 10 128626453 to 128626458 5 - TSS region transcription start site region 99906
Tssr99907 10 128626464 to 128626520 56 - TSS region transcription start site region 99907
Tssr99908 10 128626532 to 128626537 5 - TSS region transcription start site region 99908
Tssr99909 10 128626554 to 128626556 2 - TSS region transcription start site region 99909
Tssr99910 10 128626672 to 128626689 17 - TSS region transcription start site region 99910
Tssr99911 10 128626696 to 128626715 19 - TSS region transcription start site region 99911
Tssr99912 10 128626723 to 128626740 17 - TSS region transcription start site region 99912
Tssr99913 10 128626751 to 128626767 16 - TSS region transcription start site region 99913
Ikzf4 10 128630843 to 128645991 15148 - protein coding gene IKAROS family zinc finger 4
Tssr96435 10 128637393 to 128637420 27 + TSS region transcription start site region 96435
Tssr99914 10 128642928 to 128642941 13 - TSS region transcription start site region 99914
Cpgi2412 10 128645672 to 128646194 522 CpG island CpG island 2412
Tssr99915 10 128645784 to 128645816 32 - TSS region transcription start site region 99915
Gm26876 10 128645840 to 128647800 1960 + lincRNA gene predicted gene, 26876
Tssr99916 10 128645965 to 128645988 23 - TSS region transcription start site region 99916
Gm49782 10 128651259 to 128669315 18056 - lincRNA gene predicted gene, 49782