Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:128263680-130894442

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485 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frct3a 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3a
Frct3c 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3c
Frct3 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3
Opfaq10 10 125797802 to 129630506 3832704 QTL open field activity QTL 10
Frct3b 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3b
Frct3d 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3d
Opfaq7 10 127910449 to 129630506 1720057 QTL open field activity QTL 7
Tssr96374 10 128268624 to 128268639 15 + TSS region transcription start site region 96374
Tssr96375 10 128268646 to 128268651 5 + TSS region transcription start site region 96375
Tssr96376 10 128268656 to 128268722 66 + TSS region transcription start site region 96376
Apof 10 128268671 to 128270153 1482 + protein coding gene apolipoprotein F
Tssr96377 10 128268850 to 128268869 19 + TSS region transcription start site region 96377
Tssr96378 10 128269173 to 128269194 21 + TSS region transcription start site region 96378
Tssr96379 10 128269201 to 128269213 12 + TSS region transcription start site region 96379
Tssr96380 10 128269326 to 128269341 15 + TSS region transcription start site region 96380
Cpgi2390 10 128270335 to 128270887 552 CpG island CpG island 2390
Tssr96381 10 128270506 to 128270541 35 + TSS region transcription start site region 96381
Tssr96382 10 128270546 to 128270577 31 + TSS region transcription start site region 96382
Stat2 10 128270559 to 128292849 22290 + protein coding gene signal transducer and activator of transcription 2
Tssr96383 10 128271934 to 128271942 8 + TSS region transcription start site region 96383
Tssr96384 10 128277375 to 128277401 26 + TSS region transcription start site region 96384
Tssr96385 10 128277639 to 128277658 19 + TSS region transcription start site region 96385
Tssr96386 10 128278771 to 128278788 17 + TSS region transcription start site region 96386
Cpgi2391 10 128283305 to 128283687 382 CpG island CpG island 2391
Tssr96387 10 128285046 to 128285050 4 + TSS region transcription start site region 96387
Tssr96388 10 128292491 to 128292499 8 + TSS region transcription start site region 96388
Il23a 10 128296140 to 128298084 1944 - protein coding gene interleukin 23, alpha subunit p19
Tssr99851 10 128298066 to 128298101 35 - TSS region transcription start site region 99851
Tssr96389 10 128298433 to 128298434 1 + TSS region transcription start site region 96389
Gm23241 10 128299419 to 128299524 105 - snRNA gene predicted gene, 23241
Cpgi2392 10 128302968 to 128303540 572 CpG island CpG island 2392
Tssr99852 10 128303168 to 128303192 24 - TSS region transcription start site region 99852
Tssr96390 10 128303322 to 128303352 30 + TSS region transcription start site region 96390
Pan2 10 128303335 to 128321358 18023 + protein coding gene PAN2 poly(A) specific ribonuclease subunit
Tssr96391 10 128303358 to 128303418 60 + TSS region transcription start site region 96391
A630052K13Rik 10 128307815 to 128310029 2214 unclassified gene RIKEN cDNA A630052K13 gene
Cpgi2393 10 128322386 to 128323009 623 CpG island CpG island 2393
Tssr96392 10 128322401 to 128322412 11 + TSS region transcription start site region 96392
Cnpy2 10 128322440 to 128327187 4747 + protein coding gene canopy FGF signaling regulator 2
Tssr96393 10 128322443 to 128322476 33 + TSS region transcription start site region 96393
Tssr96394 10 128322479 to 128322493 14 + TSS region transcription start site region 96394
Tssr96395 10 128322496 to 128322540 44 + TSS region transcription start site region 96395
Tssr96396 10 128322544 to 128322574 30 + TSS region transcription start site region 96396
Tssr96397 10 128322575 to 128322595 20 + TSS region transcription start site region 96397
Tssr96398 10 128322607 to 128322621 14 + TSS region transcription start site region 96398
Tssr96399 10 128322635 to 128322648 13 + TSS region transcription start site region 96399
Tssr96400 10 128322657 to 128322729 72 + TSS region transcription start site region 96400
Tssr96401 10 128322734 to 128322747 13 + TSS region transcription start site region 96401
Cpgi2394 10 128337633 to 128338258 625 CpG island CpG island 2394
Tssr96402 10 128337739 to 128337759 20 + TSS region transcription start site region 96402
Tssr96403 10 128337761 to 128337818 57 + TSS region transcription start site region 96403
Cs 10 128337832 to 128362479 24647 + protein coding gene citrate synthase
Tssr96404 10 128337833 to 128337844 11 + TSS region transcription start site region 96404
Tssr99853 10 128337960 to 128337977 17 - TSS region transcription start site region 99853
Gm23182 10 128349241 to 128349375 134 + snoRNA gene predicted gene, 23182
Tssr96405 10 128361293 to 128361341 48 + TSS region transcription start site region 96405
Tssr96406 10 128361388 to 128361406 18 + TSS region transcription start site region 96406
Tssr96407 10 128362114 to 128362133 19 + TSS region transcription start site region 96407
Coq10a 10 128363100 to 128368997 5897 - protein coding gene coenzyme Q10A
Cpgi2395 10 128368083 to 128369415 1332 CpG island CpG island 2395
Tssr99854 10 128368676 to 128368691 15 - TSS region transcription start site region 99854
Tssr99855 10 128368890 to 128368897 7 - TSS region transcription start site region 99855
Tssr99856 10 128368943 to 128369013 70 - TSS region transcription start site region 99856
Tssr99857 10 128369082 to 128369101 19 - TSS region transcription start site region 99857
Tssr99858 10 128369122 to 128369198 76 - TSS region transcription start site region 99858
Tssr96408 10 128376467 to 128376513 46 + TSS region transcription start site region 96408
Cpgi2396 10 128376657 to 128377844 1187 CpG island CpG island 2396
Tssr96409 10 128377086 to 128377155 69 + TSS region transcription start site region 96409
Ankrd52 10 128377124 to 128394006 16882 + protein coding gene ankyrin repeat domain 52
Gm26308 10 128377831 to 128377899 68 - miRNA gene predicted gene, 26308
Mir6914 10 128382838 to 128382906 68 + miRNA gene microRNA 6914
Mir6915 10 128388832 to 128388900 68 + miRNA gene microRNA 6915
Cpgi2397 10 128389257 to 128389412 155 CpG island CpG island 2397
Tssr96410 10 128391264 to 128391266 2 + TSS region transcription start site region 96410
Gm17201 10 128391842 to 128395563 3721 - antisense lncRNA gene predicted gene 17201
Slc39a5 10 128395931 to 128401229 5298 - protein coding gene solute carrier family 39 (metal ion transporter), member 5
Tssr99859 10 128400294 to 128400308 14 - TSS region transcription start site region 99859
Tssr99860 10 128400448 to 128400473 25 - TSS region transcription start site region 99860
Tssr99861 10 128400497 to 128400537 40 - TSS region transcription start site region 99861
Tssr99862 10 128401192 to 128401214 22 - TSS region transcription start site region 99862
Tssr99863 10 128401218 to 128401234 16 - TSS region transcription start site region 99863
Tssr99864 10 128401239 to 128401252 13 - TSS region transcription start site region 99864
Nabp2 10 128401394 to 128411487 10093 - protein coding gene nucleic acid binding protein 2
Tssr99865 10 128401831 to 128401853 22 - TSS region transcription start site region 99865
Tssr99866 10 128401858 to 128401880 22 - TSS region transcription start site region 99866
Gm25361 10 128402758 to 128402833 75 + miRNA gene predicted gene, 25361
Cpgi2398 10 128408936 to 128409970 1034 CpG island CpG island 2398
Tssr99867 10 128409146 to 128409176 30 - TSS region transcription start site region 99867
Tssr99868 10 128409178 to 128409191 13 - TSS region transcription start site region 99868
Tssr99869 10 128409319 to 128409374 55 - TSS region transcription start site region 99869
Tssr99870 10 128409766 to 128409862 96 - TSS region transcription start site region 99870
Tssr99871 10 128410532 to 128410565 33 - TSS region transcription start site region 99871
Cpgi2399 10 128411188 to 128412392 1204 CpG island CpG island 2399
Tssr96411 10 128411623 to 128411676 53 + TSS region transcription start site region 96411
Rnf41 10 128411657 to 128441441 29784 + protein coding gene ring finger protein 41
Tssr96412 10 128411680 to 128411720 40 + TSS region transcription start site region 96412
Tssr96413 10 128411730 to 128411757 27 + TSS region transcription start site region 96413
Tssr96414 10 128413210 to 128413221 11 + TSS region transcription start site region 96414
Tssr96415 10 128415179 to 128415196 17 + TSS region transcription start site region 96415
Tssr96416 10 128428247 to 128428252 5 + TSS region transcription start site region 96416
Gm26347 10 128435914 to 128436044 130 + snoRNA gene predicted gene, 26347
Tssr3398 10 128439149 to 128439162 13 + TSS region transcription start site region 3398
Tssr99872 10 128455570 to 128455574 4 - TSS region transcription start site region 99872
Cpgi2400 10 128458390 to 128460065 1675 CpG island CpG island 2400
n-TScga2 10 128458464 to 128458545 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon CGA)
Mir8105 10 128458680 to 128458768 88 + miRNA gene microRNA 8105
Tssr96417 10 128458968 to 128458989 21 + TSS region transcription start site region 96417
Tssr96418 10 128459209 to 128459220 11 + TSS region transcription start site region 96418
Tssr96419 10 128459239 to 128459248 9 + TSS region transcription start site region 96419
Smarcc2 10 128459248 to 128490482 31234 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
Tssr96420 10 128459259 to 128459277 18 + TSS region transcription start site region 96420
Tssr96421 10 128459290 to 128459328 38 + TSS region transcription start site region 96421
Tssr96422 10 128459568 to 128459609 41 + TSS region transcription start site region 96422
Tssr96423 10 128459734 to 128459763 29 + TSS region transcription start site region 96423
Tssr96424 10 128469278 to 128469288 10 + TSS region transcription start site region 96424
Tssr96425 10 128474566 to 128474577 11 + TSS region transcription start site region 96425
Tssr96426 10 128485021 to 128485028 7 + TSS region transcription start site region 96426
Tssr96427 10 128488010 to 128488023 13 + TSS region transcription start site region 96427
Tssr96428 10 128489083 to 128489120 37 + TSS region transcription start site region 96428
Myl6 10 128490859 to 128493886 3027 - protein coding gene myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
Tssr3399 10 128492894 to 128492901 7 - TSS region transcription start site region 3399
Tssr99873 10 128492903 to 128492914 11 - TSS region transcription start site region 99873
Tssr99874 10 128492955 to 128492967 12 - TSS region transcription start site region 99874
Tssr99875 10 128492971 to 128493034 63 - TSS region transcription start site region 99875
Tssr99876 10 128493472 to 128493489 17 - TSS region transcription start site region 99876
Tssr99877 10 128493522 to 128493552 30 - TSS region transcription start site region 99877
Cpgi2401 10 128493806 to 128494006 200 CpG island CpG island 2401
Tssr99878 10 128493834 to 128493908 74 - TSS region transcription start site region 99878
Tssr99879 10 128494136 to 128494151 15 - TSS region transcription start site region 99879
Myl6b 10 128494157 to 128498685 4528 - protein coding gene myosin, light polypeptide 6B
Tssr96429 10 128494313 to 128494368 55 + TSS region transcription start site region 96429
Cpgi2402 10 128494320 to 128494518 198 CpG island CpG island 2402
Tssr99880 10 128497389 to 128497404 15 - TSS region transcription start site region 99880
Tssr99881 10 128498647 to 128498675 28 - TSS region transcription start site region 99881
Cpgi2403 10 128498649 to 128499154 505 CpG island CpG island 2403
Tssr99882 10 128498676 to 128498709 33 - TSS region transcription start site region 99882
Tssr96430 10 128498770 to 128498819 49 + TSS region transcription start site region 96430
Tssr96431 10 128498957 to 128498996 39 + TSS region transcription start site region 96431
Cpgi2404 10 128499189 to 128499440 251 CpG island CpG island 2404
Tssr96432 10 128499235 to 128499259 24 + TSS region transcription start site region 96432
A430046D13Rik 10 128499364 to 128504242 4878 + lincRNA gene Riken cDNA A430046D13 gene
Tssr96433 10 128499408 to 128499445 37 + TSS region transcription start site region 96433
Tssr96434 10 128501292 to 128501295 3 + TSS region transcription start site region 96434
Esyt1 10 128510248 to 128525859 15611 - protein coding gene extended synaptotagmin-like protein 1
Mir6916 10 128511968 to 128512030 62 - miRNA gene microRNA 6916
Cpgi2405 10 128516148 to 128516416 268 CpG island CpG island 2405
Tssr99883 10 128517280 to 128517316 36 - TSS region transcription start site region 99883
Tssr99884 10 128518533 to 128518535 2 - TSS region transcription start site region 99884
Tssr99885 10 128520736 to 128520748 12 - TSS region transcription start site region 99885
Gm29585 10 128522263 to 128545359 23096 + antisense lncRNA gene predicted gene 29585
Tssr99886 10 128522465 to 128522480 15 - TSS region transcription start site region 99886
Cpgi2406 10 128524706 to 128526266 1560 CpG island CpG island 2406
Tssr99887 10 128525861 to 128525880 19 - TSS region transcription start site region 99887
Zc3h10 10 128543563 to 128547744 4181 - protein coding gene zinc finger CCCH type containing 10
Cpgi2407 10 128547162 to 128548125 963 CpG island CpG island 2407
Tssr99888 10 128547416 to 128547448 32 - TSS region transcription start site region 99888
Tssr99889 10 128547722 to 128547768 46 - TSS region transcription start site region 99889
Rpl41 10 128548110 to 128549168 1058 - protein coding gene ribosomal protein L41
Cpgi2408 10 128548855 to 128549286 431 CpG island CpG island 2408
Tssr99890 10 128549103 to 128549121 18 - TSS region transcription start site region 99890
Tssr99891 10 128549125 to 128549170 45 - TSS region transcription start site region 99891
Gm9176 10 128549694 to 128550813 1119 - pseudogene predicted gene 9176
Tssr99892 10 128551756 to 128551759 3 - TSS region transcription start site region 99892
Pa2g4 10 128557766 to 128565934 8168 - protein coding gene proliferation-associated 2G4
Gm47275 10 128559201 to 128559319 118 - miRNA gene predicted gene, 47275
Tssr99893 10 128559300 to 128559328 28 - TSS region transcription start site region 99893
Tssr99894 10 128562872 to 128562906 34 - TSS region transcription start site region 99894
Cpgi2409 10 128565135 to 128566569 1434 CpG island CpG island 2409
Tssr99895 10 128565904 to 128565999 95 - TSS region transcription start site region 99895
Tssr99896 10 128566004 to 128566019 15 - TSS region transcription start site region 99896
Tssr99897 10 128566213 to 128566253 40 - TSS region transcription start site region 99897
Tssr99898 10 128568665 to 128568688 23 - TSS region transcription start site region 99898
Erbb3 10 128569368 to 128589501 20133 - protein coding gene erb-b2 receptor tyrosine kinase 3
Tssr99899 10 128578469 to 128578505 36 - TSS region transcription start site region 99899
Tssr99900 10 128583757 to 128583800 43 - TSS region transcription start site region 99900
Mir6917 10 128584437 to 128584497 60 - miRNA gene microRNA 6917
Cpgi2410 10 128589197 to 128590669 1472 CpG island CpG island 2410
Tssr99901 10 128589622 to 128589642 20 - TSS region transcription start site region 99901
Tssr99902 10 128589650 to 128589673 23 - TSS region transcription start site region 99902
Tssr99903 10 128589679 to 128589694 15 - TSS region transcription start site region 99903
Tssr99904 10 128589925 to 128589946 21 - TSS region transcription start site region 99904
Gm47540 10 128595615 to 128598623 3008 + lincRNA gene predicted gene, 47540
Gm9182 10 128615401 to 128616039 638 + pseudogene predicted gene 9182
Rps26 10 128624529 to 128626506 1977 - protein coding gene ribosomal protein S26
Cpgi2411 10 128625998 to 128626571 573 CpG island CpG island 2411
Tssr99905 10 128626421 to 128626443 22 - TSS region transcription start site region 99905
Tssr99906 10 128626453 to 128626458 5 - TSS region transcription start site region 99906
Tssr99907 10 128626464 to 128626520 56 - TSS region transcription start site region 99907
Tssr99908 10 128626532 to 128626537 5 - TSS region transcription start site region 99908
Tssr99909 10 128626554 to 128626556 2 - TSS region transcription start site region 99909
Tssr99910 10 128626672 to 128626689 17 - TSS region transcription start site region 99910
Tssr99911 10 128626696 to 128626715 19 - TSS region transcription start site region 99911
Tssr99912 10 128626723 to 128626740 17 - TSS region transcription start site region 99912
Tssr99913 10 128626751 to 128626767 16 - TSS region transcription start site region 99913
Ikzf4 10 128630843 to 128645991 15148 - protein coding gene IKAROS family zinc finger 4
Tssr96435 10 128637393 to 128637420 27 + TSS region transcription start site region 96435
Tssr99914 10 128642928 to 128642941 13 - TSS region transcription start site region 99914
Cpgi2412 10 128645672 to 128646194 522 CpG island CpG island 2412
Tssr99915 10 128645784 to 128645816 32 - TSS region transcription start site region 99915
Gm26876 10 128645840 to 128647800 1960 + lincRNA gene predicted gene, 26876