Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:127891267-128091284

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr96274 10 127893968 to 127893984 16 + TSS region transcription start site region 96274
Tssr96275 10 127898515 to 127898532 17 + TSS region transcription start site region 96275
Sdr9c7 10 127898535 to 127911761 13226 + protein coding gene 4short chain dehydrogenase/reductase family 9C, member 7
Tssr96276 10 127898538 to 127898549 11 + TSS region transcription start site region 96276
Tssr96277 10 127898550 to 127898555 5 + TSS region transcription start site region 96277
Tssr96278 10 127901959 to 127901980 21 + TSS region transcription start site region 96278
Tssr96279 10 127902000 to 127902034 34 + TSS region transcription start site region 96279
Tssr96280 10 127902041 to 127902056 15 + TSS region transcription start site region 96280
Opfaq7 10 127910449 to 129630506 1720057 QTL open field activity QTL 7
Gm40804 10 127913517 to 127925501 11984 - lncRNA gene predicted gene, 40804
Gm15905 10 127921069 to 127921366 297 + pseudogene predicted gene 15905
Gm40805 10 127935541 to 127952515 16974 - lncRNA gene predicted gene, 40805
Cpgi2378 10 127936656 to 127936926 270 CpG island CpG island 2378
Gm15900 10 127948219 to 127948560 341 - pseudogene predicted gene 15900
Gm23996 10 127953045 to 127953175 130 - snoRNA gene predicted gene, 23996
Gm40806 10 127961446 to 127971088 9642 - lncRNA gene predicted gene, 40806
Tssr96281 10 127961525 to 127961549 24 + TSS region transcription start site region 96281
Gm47949 10 127961556 to 127961929 373 + pseudogene predicted gene, 47949
Hsd17b6 10 127990936 to 128007611 16675 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 6
Tssr99828 10 127991267 to 127991284 17 - TSS region transcription start site region 99828
Tssr99829 10 127998326 to 127998329 3 - TSS region transcription start site region 99829
Tssr99830 10 128007589 to 128007628 39 - TSS region transcription start site region 99830
Gm10120 10 128011776 to 128012132 356 + pseudogene predicted gene 10120
Cpgi2379 10 128015074 to 128015452 378 CpG island CpG island 2379
Tssr96282 10 128015157 to 128015175 18 + TSS region transcription start site region 96282
Tssr96283 10 128015186 to 128015231 45 + TSS region transcription start site region 96283
Prim1 10 128015215 to 128030030 14815 + protein coding gene DNA primase, p49 subunit
Tssr96284 10 128015234 to 128015249 15 + TSS region transcription start site region 96284
Tssr96285 10 128033266 to 128033270 4 + TSS region transcription start site region 96285
Tssr96286 10 128033347 to 128033352 5 + TSS region transcription start site region 96286
Tssr96287 10 128033599 to 128033608 9 + TSS region transcription start site region 96287
Tssr96288 10 128033632 to 128033675 43 + TSS region transcription start site region 96288
Tssr96289 10 128033683 to 128033694 11 + TSS region transcription start site region 96289
Cpgi2380 10 128035268 to 128036454 1186 CpG island CpG island 2380
Tssr96290 10 128035330 to 128035338 8 + TSS region transcription start site region 96290
Tssr96291 10 128035339 to 128035355 16 + TSS region transcription start site region 96291
Tssr96292 10 128035363 to 128035380 17 + TSS region transcription start site region 96292
Tssr96293 10 128035480 to 128035520 40 + TSS region transcription start site region 96293
Naca 10 128035575 to 128048637 13062 + protein coding gene nascent polypeptide-associated complex alpha polypeptide
Tssr96294 10 128035587 to 128035594 7 + TSS region transcription start site region 96294
Tssr96295 10 128035604 to 128035613 9 + TSS region transcription start site region 96295
Tssr96296 10 128035625 to 128035635 10 + TSS region transcription start site region 96296
Tssr96297 10 128035637 to 128035655 18 + TSS region transcription start site region 96297
Tssr96298 10 128036218 to 128036239 21 + TSS region transcription start site region 96298
Tssr96299 10 128039408 to 128039421 13 + TSS region transcription start site region 96299
Tssr96300 10 128039472 to 128039482 10 + TSS region transcription start site region 96300
Tssr96301 10 128039593 to 128039606 13 + TSS region transcription start site region 96301
Tssr96302 10 128040290 to 128040298 8 + TSS region transcription start site region 96302
Tssr96303 10 128042370 to 128042382 12 + TSS region transcription start site region 96303
Tssr96304 10 128042509 to 128042519 10 + TSS region transcription start site region 96304
Tssr96305 10 128042690 to 128042695 5 + TSS region transcription start site region 96305
Tssr96306 10 128042833 to 128042847 14 + TSS region transcription start site region 96306
Tssr96307 10 128042892 to 128042911 19 + TSS region transcription start site region 96307
Tssr96308 10 128043118 to 128043128 10 + TSS region transcription start site region 96308
Tssr96309 10 128043209 to 128043220 11 + TSS region transcription start site region 96309
Tssr96310 10 128043443 to 128043454 11 + TSS region transcription start site region 96310
Tssr99831 10 128043813 to 128043826 13 - TSS region transcription start site region 99831
Tssr96311 10 128052303 to 128052308 5 + TSS region transcription start site region 96311
Cpgi2381 10 128058406 to 128060030 1624 CpG island CpG island 2381
Tssr99832 10 128058745 to 128058754 9 - TSS region transcription start site region 99832
Tssr99833 10 128058790 to 128058843 53 - TSS region transcription start site region 99833
Tssr96312 10 128058947 to 128058960 13 + TSS region transcription start site region 96312
Ptges3 10 128058954 to 128077272 18318 + protein coding gene prostaglandin E synthase 3
Tssr96313 10 128058974 to 128059025 51 + TSS region transcription start site region 96313
Tssr96314 10 128059035 to 128059052 17 + TSS region transcription start site region 96314
Tssr96315 10 128059064 to 128059083 19 + TSS region transcription start site region 96315
Tssr96316 10 128059096 to 128059153 57 + TSS region transcription start site region 96316
Tssr96317 10 128061340 to 128061344 4 + TSS region transcription start site region 96317
Tssr96318 10 128068211 to 128068222 11 + TSS region transcription start site region 96318
Gm47438 10 128081354 to 128082970 1616 - lincRNA gene predicted gene, 47438
Cpgi2382 10 128082934 to 128084147 1213 CpG island CpG island 2382
Tssr99834 10 128082968 to 128082981 13 - TSS region transcription start site region 99834
Tssr96319 10 128083301 to 128083309 8 + TSS region transcription start site region 96319
Atp5b 10 128083307 to 128090388 7081 + protein coding gene ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
Tssr96320 10 128083891 to 128083938 47 + TSS region transcription start site region 96320
Tssr96321 10 128083941 to 128083985 44 + TSS region transcription start site region 96321
Snord59a 10 128084143 to 128084216 73 + snoRNA gene small nucleolar RNA, C/D box 59A
Mir677 10 128085286 to 128085363 77 + miRNA gene microRNA 677
Tssr96322 10 128085510 to 128085528 18 + TSS region transcription start site region 96322
Tssr96323 10 128086031 to 128086097 66 + TSS region transcription start site region 96323
Tssr96324 10 128086132 to 128086167 35 + TSS region transcription start site region 96324
Tssr96325 10 128086292 to 128086306 14 + TSS region transcription start site region 96325
Tssr96326 10 128086309 to 128086322 13 + TSS region transcription start site region 96326
Tssr96327 10 128086325 to 128086349 24 + TSS region transcription start site region 96327
Tssr96328 10 128086372 to 128086389 17 + TSS region transcription start site region 96328
Tssr96329 10 128088313 to 128088365 52 + TSS region transcription start site region 96329
Tssr96330 10 128088373 to 128088430 57 + TSS region transcription start site region 96330
Tssr96331 10 128090157 to 128090205 48 + TSS region transcription start site region 96331
Tssr96332 10 128091124 to 128091135 11 + TSS region transcription start site region 96332
Tssr96333 10 128091138 to 128091158 20 + TSS region transcription start site region 96333
Tssr96334 10 128091159 to 128091168 9 + TSS region transcription start site region 96334
Tssr96335 10 128091174 to 128091186 12 + TSS region transcription start site region 96335