Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:127890449-129650506

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570 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frct3 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3
Frct3c 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3c
Frct3a 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3a
Opfaq10 10 125797802 to 129630506 3832704 QTL open field activity QTL 10
Frct3d 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3d
Frct3b 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3b
Tssr96274 10 127893968 to 127893984 16 + TSS region transcription start site region 96274
Tssr96275 10 127898515 to 127898532 17 + TSS region transcription start site region 96275
Sdr9c7 10 127898535 to 127911761 13226 + protein coding gene 4short chain dehydrogenase/reductase family 9C, member 7
Tssr96276 10 127898538 to 127898549 11 + TSS region transcription start site region 96276
Tssr96277 10 127898550 to 127898555 5 + TSS region transcription start site region 96277
Tssr96278 10 127901959 to 127901980 21 + TSS region transcription start site region 96278
Tssr96279 10 127902000 to 127902034 34 + TSS region transcription start site region 96279
Tssr96280 10 127902041 to 127902056 15 + TSS region transcription start site region 96280
Opfaq7 10 127910449 to 129630506 1720057 QTL open field activity QTL 7
Gm40804 10 127913517 to 127925501 11984 - lncRNA gene predicted gene, 40804
Gm15905 10 127921069 to 127921366 297 + pseudogene predicted gene 15905
Gm40805 10 127935541 to 127952515 16974 - lncRNA gene predicted gene, 40805
Cpgi2378 10 127936656 to 127936926 270 CpG island CpG island 2378
Gm15900 10 127948219 to 127948560 341 - pseudogene predicted gene 15900
Gm23996 10 127953045 to 127953175 130 - snoRNA gene predicted gene, 23996
Gm40806 10 127961446 to 127971088 9642 - lncRNA gene predicted gene, 40806
Tssr96281 10 127961525 to 127961549 24 + TSS region transcription start site region 96281
Gm47949 10 127961556 to 127961929 373 + pseudogene predicted gene, 47949
Hsd17b6 10 127990936 to 128007611 16675 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 6
Tssr99828 10 127991267 to 127991284 17 - TSS region transcription start site region 99828
Tssr99829 10 127998326 to 127998329 3 - TSS region transcription start site region 99829
Tssr99830 10 128007589 to 128007628 39 - TSS region transcription start site region 99830
Gm10120 10 128011776 to 128012132 356 + pseudogene predicted gene 10120
Cpgi2379 10 128015074 to 128015452 378 CpG island CpG island 2379
Tssr96282 10 128015157 to 128015175 18 + TSS region transcription start site region 96282
Tssr96283 10 128015186 to 128015231 45 + TSS region transcription start site region 96283
Prim1 10 128015215 to 128030030 14815 + protein coding gene DNA primase, p49 subunit
Tssr96284 10 128015234 to 128015249 15 + TSS region transcription start site region 96284
Tssr96285 10 128033266 to 128033270 4 + TSS region transcription start site region 96285
Tssr96286 10 128033347 to 128033352 5 + TSS region transcription start site region 96286
Tssr96287 10 128033599 to 128033608 9 + TSS region transcription start site region 96287
Tssr96288 10 128033632 to 128033675 43 + TSS region transcription start site region 96288
Tssr96289 10 128033683 to 128033694 11 + TSS region transcription start site region 96289
Cpgi2380 10 128035268 to 128036454 1186 CpG island CpG island 2380
Tssr96290 10 128035330 to 128035338 8 + TSS region transcription start site region 96290
Tssr96291 10 128035339 to 128035355 16 + TSS region transcription start site region 96291
Tssr96292 10 128035363 to 128035380 17 + TSS region transcription start site region 96292
Tssr96293 10 128035480 to 128035520 40 + TSS region transcription start site region 96293
Naca 10 128035575 to 128048637 13062 + protein coding gene nascent polypeptide-associated complex alpha polypeptide
Tssr96294 10 128035587 to 128035594 7 + TSS region transcription start site region 96294
Tssr96295 10 128035604 to 128035613 9 + TSS region transcription start site region 96295
Tssr96296 10 128035625 to 128035635 10 + TSS region transcription start site region 96296
Tssr96297 10 128035637 to 128035655 18 + TSS region transcription start site region 96297
Tssr96298 10 128036218 to 128036239 21 + TSS region transcription start site region 96298
Tssr96299 10 128039408 to 128039421 13 + TSS region transcription start site region 96299
Tssr96300 10 128039472 to 128039482 10 + TSS region transcription start site region 96300
Tssr96301 10 128039593 to 128039606 13 + TSS region transcription start site region 96301
Tssr96302 10 128040290 to 128040298 8 + TSS region transcription start site region 96302
Tssr96303 10 128042370 to 128042382 12 + TSS region transcription start site region 96303
Tssr96304 10 128042509 to 128042519 10 + TSS region transcription start site region 96304
Tssr96305 10 128042690 to 128042695 5 + TSS region transcription start site region 96305
Tssr96306 10 128042833 to 128042847 14 + TSS region transcription start site region 96306
Tssr96307 10 128042892 to 128042911 19 + TSS region transcription start site region 96307
Tssr96308 10 128043118 to 128043128 10 + TSS region transcription start site region 96308
Tssr96309 10 128043209 to 128043220 11 + TSS region transcription start site region 96309
Tssr96310 10 128043443 to 128043454 11 + TSS region transcription start site region 96310
Tssr99831 10 128043813 to 128043826 13 - TSS region transcription start site region 99831
Tssr96311 10 128052303 to 128052308 5 + TSS region transcription start site region 96311
Cpgi2381 10 128058406 to 128060030 1624 CpG island CpG island 2381
Tssr99832 10 128058745 to 128058754 9 - TSS region transcription start site region 99832
Tssr99833 10 128058790 to 128058843 53 - TSS region transcription start site region 99833
Tssr96312 10 128058947 to 128058960 13 + TSS region transcription start site region 96312
Ptges3 10 128058954 to 128077272 18318 + protein coding gene prostaglandin E synthase 3
Tssr96313 10 128058974 to 128059025 51 + TSS region transcription start site region 96313
Tssr96314 10 128059035 to 128059052 17 + TSS region transcription start site region 96314
Tssr96315 10 128059064 to 128059083 19 + TSS region transcription start site region 96315
Tssr96316 10 128059096 to 128059153 57 + TSS region transcription start site region 96316
Tssr96317 10 128061340 to 128061344 4 + TSS region transcription start site region 96317
Tssr96318 10 128068211 to 128068222 11 + TSS region transcription start site region 96318
Gm47438 10 128081354 to 128082970 1616 - lincRNA gene predicted gene, 47438
Cpgi2382 10 128082934 to 128084147 1213 CpG island CpG island 2382
Tssr99834 10 128082968 to 128082981 13 - TSS region transcription start site region 99834
Tssr96319 10 128083301 to 128083309 8 + TSS region transcription start site region 96319
Atp5b 10 128083307 to 128090388 7081 + protein coding gene ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
Tssr96320 10 128083891 to 128083938 47 + TSS region transcription start site region 96320
Tssr96321 10 128083941 to 128083985 44 + TSS region transcription start site region 96321
Snord59a 10 128084143 to 128084216 73 + snoRNA gene small nucleolar RNA, C/D box 59A
Mir677 10 128085286 to 128085363 77 + miRNA gene microRNA 677
Tssr96322 10 128085510 to 128085528 18 + TSS region transcription start site region 96322
Tssr96323 10 128086031 to 128086097 66 + TSS region transcription start site region 96323
Tssr96324 10 128086132 to 128086167 35 + TSS region transcription start site region 96324
Tssr96325 10 128086292 to 128086306 14 + TSS region transcription start site region 96325
Tssr96326 10 128086309 to 128086322 13 + TSS region transcription start site region 96326
Tssr96327 10 128086325 to 128086349 24 + TSS region transcription start site region 96327
Tssr96328 10 128086372 to 128086389 17 + TSS region transcription start site region 96328
Tssr96329 10 128088313 to 128088365 52 + TSS region transcription start site region 96329
Tssr96330 10 128088373 to 128088430 57 + TSS region transcription start site region 96330
Tssr96331 10 128090157 to 128090205 48 + TSS region transcription start site region 96331
Tssr96332 10 128091124 to 128091135 11 + TSS region transcription start site region 96332
Tssr96333 10 128091138 to 128091158 20 + TSS region transcription start site region 96333
Tssr96334 10 128091159 to 128091168 9 + TSS region transcription start site region 96334
Tssr96335 10 128091174 to 128091186 12 + TSS region transcription start site region 96335
Tssr96336 10 128091576 to 128091595 19 + TSS region transcription start site region 96336
Baz2a 10 128091577 to 128129303 37726 + protein coding gene bromodomain adjacent to zinc finger domain, 2A
Tssr96337 10 128091596 to 128091624 28 + TSS region transcription start site region 96337
Tssr96338 10 128092167 to 128092193 26 + TSS region transcription start site region 96338
Cpgi2383 10 128092223 to 128093659 1436 CpG island CpG island 2383
Tssr96339 10 128092658 to 128092700 42 + TSS region transcription start site region 96339
Tssr96340 10 128092753 to 128092769 16 + TSS region transcription start site region 96340
Tssr96341 10 128092771 to 128092819 48 + TSS region transcription start site region 96341
Tssr96342 10 128093243 to 128093265 22 + TSS region transcription start site region 96342
Cpgi2384 10 128094701 to 128094928 227 CpG island CpG island 2384
Cpgi2385 10 128096474 to 128097902 1428 CpG island CpG island 2385
Tssr96343 10 128096851 to 128096899 48 + TSS region transcription start site region 96343
Tssr96344 10 128096908 to 128096909 1 + TSS region transcription start site region 96344
Tssr96345 10 128096915 to 128096926 11 + TSS region transcription start site region 96345
Tssr96346 10 128099440 to 128099444 4 + TSS region transcription start site region 96346
Tssr96347 10 128104064 to 128104068 4 + TSS region transcription start site region 96347
Tssr96348 10 128108957 to 128109004 47 + TSS region transcription start site region 96348
Tssr96349 10 128110760 to 128110775 15 + TSS region transcription start site region 96349
Tssr96350 10 128110811 to 128110838 27 + TSS region transcription start site region 96350
Rbms2 10 128131558 to 128180297 48739 - protein coding gene RNA binding motif, single stranded interacting protein 2
Tssr99835 10 128146476 to 128146493 17 - TSS region transcription start site region 99835
Tssr99836 10 128176439 to 128176465 26 - TSS region transcription start site region 99836
Tssr99837 10 128176468 to 128176489 21 - TSS region transcription start site region 99837
Tssr99838 10 128176591 to 128176611 20 - TSS region transcription start site region 99838
Tssr99839 10 128176623 to 128176645 22 - TSS region transcription start site region 99839
Tssr99840 10 128179978 to 128179990 12 - TSS region transcription start site region 99840
Tssr99841 10 128179997 to 128180006 9 - TSS region transcription start site region 99841
Tssr99842 10 128180016 to 128180024 8 - TSS region transcription start site region 99842
Tssr99843 10 128180040 to 128180058 18 - TSS region transcription start site region 99843
Tssr99844 10 128180101 to 128180112 11 - TSS region transcription start site region 99844
Tssr99845 10 128180206 to 128180218 12 - TSS region transcription start site region 99845
Tssr99846 10 128180229 to 128180254 25 - TSS region transcription start site region 99846
Tssr99847 10 128180265 to 128180307 42 - TSS region transcription start site region 99847
Tssr99848 10 128186084 to 128186113 29 - TSS region transcription start site region 99848
Tssr96351 10 128190483 to 128190500 17 + TSS region transcription start site region 96351
Gm4556 10 128190529 to 128190883 354 + pseudogene predicted gene 4556
Cpgi2386 10 128193930 to 128195478 1548 CpG island CpG island 2386
Tssr96352 10 128194446 to 128194466 20 + TSS region transcription start site region 96352
Tssr96353 10 128194602 to 128194613 11 + TSS region transcription start site region 96353
Tssr96354 10 128194631 to 128194667 36 + TSS region transcription start site region 96354
Gls2 10 128194635 to 128210004 15369 + protein coding gene glutaminase 2 (liver, mitochondrial)
Tssr96355 10 128194676 to 128194687 11 + TSS region transcription start site region 96355
Tssr96356 10 128194721 to 128194755 34 + TSS region transcription start site region 96356
Spryd4 10 128209908 to 128211794 1886 - protein coding gene SPRY domain containing 4
Cpgi2387 10 128211618 to 128212054 436 CpG island CpG island 2387
Tssr99849 10 128211766 to 128211775 9 - TSS region transcription start site region 99849
Tssr99850 10 128211788 to 128211823 35 - TSS region transcription start site region 99850
Cpgi2388 10 128213079 to 128213464 385 CpG island CpG island 2388
Tssr96357 10 128225830 to 128225845 15 + TSS region transcription start site region 96357
Mip 10 128225838 to 128231812 5974 + protein coding gene major intrinsic protein of lens fiber
Tssr96358 10 128225943 to 128225961 18 + TSS region transcription start site region 96358
Gm26847 10 128230590 to 128232790 2200 - lincRNA gene predicted gene, 26847
Tssr96359 10 128231386 to 128231397 11 + TSS region transcription start site region 96359
Tssr96360 10 128231424 to 128231435 11 + TSS region transcription start site region 96360
Tssr96361 10 128231581 to 128231594 13 + TSS region transcription start site region 96361
Tssr96362 10 128231630 to 128231641 11 + TSS region transcription start site region 96362
Tssr96363 10 128231743 to 128231754 11 + TSS region transcription start site region 96363
Tssr96364 10 128231755 to 128231770 15 + TSS region transcription start site region 96364
Cpgi2389 10 128232058 to 128232831 773 CpG island CpG island 2389
Timeless 10 128232065 to 128252941 20876 + protein coding gene timeless circadian clock 1
Tssr96365 10 128232072 to 128232094 22 + TSS region transcription start site region 96365
Tssr96366 10 128232096 to 128232101 5 + TSS region transcription start site region 96366
Tssr96367 10 128232310 to 128232355 45 + TSS region transcription start site region 96367
Tssr96368 10 128238034 to 128238069 35 + TSS region transcription start site region 96368
Tssr96369 10 128244828 to 128244831 3 + TSS region transcription start site region 96369
Tssr96370 10 128247266 to 128247332 66 + TSS region transcription start site region 96370
Apon 10 128254131 to 128255901 1770 + protein coding gene apolipoprotein N
Tssr96371 10 128254157 to 128254176 19 + TSS region transcription start site region 96371
Tssr96372 10 128254185 to 128254196 11 + TSS region transcription start site region 96372
Tssr96373 10 128255282 to 128255292 10 + TSS region transcription start site region 96373
Tssr96374 10 128268624 to 128268639 15 + TSS region transcription start site region 96374
Tssr96375 10 128268646 to 128268651 5 + TSS region transcription start site region 96375
Tssr96376 10 128268656 to 128268722 66 + TSS region transcription start site region 96376
Apof 10 128268671 to 128270153 1482 + protein coding gene apolipoprotein F
Tssr96377 10 128268850 to 128268869 19 + TSS region transcription start site region 96377
Tssr96378 10 128269173 to 128269194 21 + TSS region transcription start site region 96378
Tssr96379 10 128269201 to 128269213 12 + TSS region transcription start site region 96379
Tssr96380 10 128269326 to 128269341 15 + TSS region transcription start site region 96380
Cpgi2390 10 128270335 to 128270887 552 CpG island CpG island 2390
Tssr96381 10 128270506 to 128270541 35 + TSS region transcription start site region 96381
Tssr96382 10 128270546 to 128270577 31 + TSS region transcription start site region 96382
Stat2 10 128270559 to 128292849 22290 + protein coding gene signal transducer and activator of transcription 2
Tssr96383 10 128271934 to 128271942 8 + TSS region transcription start site region 96383
Tssr96384 10 128277375 to 128277401 26 + TSS region transcription start site region 96384
Tssr96385 10 128277639 to 128277658 19 + TSS region transcription start site region 96385
Tssr96386 10 128278771 to 128278788 17 + TSS region transcription start site region 96386
Cpgi2391 10 128283305 to 128283687 382 CpG island CpG island 2391
Tssr96387 10 128285046 to 128285050 4 + TSS region transcription start site region 96387
Tssr96388 10 128292491 to 128292499 8 + TSS region transcription start site region 96388
Il23a 10 128296140 to 128298084 1944 - protein coding gene interleukin 23, alpha subunit p19
Tssr99851 10 128298066 to 128298101 35 - TSS region transcription start site region 99851
Tssr96389 10 128298433 to 128298434 1 + TSS region transcription start site region 96389
Gm23241 10 128299419 to 128299524 105 - snRNA gene predicted gene, 23241
Cpgi2392 10 128302968 to 128303540 572 CpG island CpG island 2392
Tssr99852 10 128303168 to 128303192 24 - TSS region transcription start site region 99852
Tssr96390 10 128303322 to 128303352 30 + TSS region transcription start site region 96390
Pan2 10 128303335 to 128321358 18023 + protein coding gene PAN2 poly(A) specific ribonuclease subunit
Tssr96391 10 128303358 to 128303418 60 + TSS region transcription start site region 96391
A630052K13Rik 10 128307815 to 128310029 2214 unclassified gene RIKEN cDNA A630052K13 gene
Cpgi2393 10 128322386 to 128323009 623 CpG island CpG island 2393
Tssr96392 10 128322401 to 128322412 11 + TSS region transcription start site region 96392
Cnpy2 10 128322440 to 128327187 4747 + protein coding gene canopy FGF signaling regulator 2