Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:127753515-128043532

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2377 10 127756296 to 127756691 395 CpG island CpG island 2377
Rdh1 10 127759726 to 127768299 8573 + protein coding gene retinol dehydrogenase 1 (all trans)
Tssr96255 10 127759734 to 127759746 12 + TSS region transcription start site region 96255
Tssr96256 10 127759754 to 127759766 12 + TSS region transcription start site region 96256
Tssr96257 10 127759780 to 127759801 21 + TSS region transcription start site region 96257
Rdh16f1 10 127759787 to 127792694 32907 + protein coding gene RDH16 family member 1
Tssr96258 10 127759805 to 127759816 11 + TSS region transcription start site region 96258
Tssr96259 10 127776345 to 127776356 11 + TSS region transcription start site region 96259
Tssr96260 10 127776374 to 127776407 33 + TSS region transcription start site region 96260
Rdh9 10 127776405 to 127792697 16292 + protein coding gene retinol dehydrogenase 9
Tssr96261 10 127776436 to 127776443 7 + TSS region transcription start site region 96261
Rdh16 10 127801090 to 127815839 14749 + protein coding gene retinol dehydrogenase 16
Tssr96262 10 127801145 to 127801189 44 + TSS region transcription start site region 96262
Rdh18-ps 10 127824284 to 127843938 19654 + pseudogene retinol dehydrogenase 18, pseudogene
Frct3b 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3b
Frct3d 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3d
Tssr96263 10 127849889 to 127849901 12 + TSS region transcription start site region 96263
Tssr96264 10 127849903 to 127849914 11 + TSS region transcription start site region 96264
Tssr96265 10 127849917 to 127849926 9 + TSS region transcription start site region 96265
Rdh19 10 127849928 to 127861176 11248 + protein coding gene retinol dehydrogenase 19
Tssr96266 10 127850003 to 127850021 18 + TSS region transcription start site region 96266
Tssr96267 10 127850031 to 127850040 9 + TSS region transcription start site region 96267
Tssr3396 10 127850053 to 127850059 6 + TSS region transcription start site region 3396
Tssr96268 10 127866412 to 127866417 5 + TSS region transcription start site region 96268
Tssr96269 10 127866442 to 127866455 13 + TSS region transcription start site region 96269
Tssr96270 10 127866457 to 127866496 39 + TSS region transcription start site region 96270
Rdh16f2 10 127866476 to 127877319 10843 + protein coding gene RDH16 family member 2
Tssr96271 10 127866498 to 127866507 9 + TSS region transcription start site region 96271
Tssr96272 10 127866525 to 127866538 13 + TSS region transcription start site region 96272
Gm31091 10 127875757 to 127878525 2768 - lncRNA gene predicted gene, 31091
Tssr3397 10 127878315 to 127878343 28 - TSS region transcription start site region 3397
Tssr96273 10 127879313 to 127879324 11 + TSS region transcription start site region 96273
Rdh7 10 127884028 to 127888817 4789 - protein coding gene retinol dehydrogenase 7
Tssr99824 10 127884347 to 127884351 4 - TSS region transcription start site region 99824
Tssr99825 10 127885231 to 127885234 3 - TSS region transcription start site region 99825
Tssr99826 10 127888644 to 127888662 18 - TSS region transcription start site region 99826
Tssr99827 10 127888688 to 127888750 62 - TSS region transcription start site region 99827
Tssr96274 10 127893968 to 127893984 16 + TSS region transcription start site region 96274
Tssr96275 10 127898515 to 127898532 17 + TSS region transcription start site region 96275
Sdr9c7 10 127898535 to 127911761 13226 + protein coding gene 4short chain dehydrogenase/reductase family 9C, member 7
Tssr96276 10 127898538 to 127898549 11 + TSS region transcription start site region 96276
Tssr96277 10 127898550 to 127898555 5 + TSS region transcription start site region 96277
Tssr96278 10 127901959 to 127901980 21 + TSS region transcription start site region 96278
Tssr96279 10 127902000 to 127902034 34 + TSS region transcription start site region 96279
Tssr96280 10 127902041 to 127902056 15 + TSS region transcription start site region 96280
Opfaq7 10 127910449 to 129630506 1720057 QTL open field activity QTL 7
Gm40804 10 127913517 to 127925501 11984 - lncRNA gene predicted gene, 40804
Gm15905 10 127921069 to 127921366 297 + pseudogene predicted gene 15905
Gm40805 10 127935541 to 127952515 16974 - lncRNA gene predicted gene, 40805
Cpgi2378 10 127936656 to 127936926 270 CpG island CpG island 2378
Gm15900 10 127948219 to 127948560 341 - pseudogene predicted gene 15900
Gm23996 10 127953045 to 127953175 130 - snoRNA gene predicted gene, 23996
Gm40806 10 127961446 to 127971088 9642 - lncRNA gene predicted gene, 40806
Tssr96281 10 127961525 to 127961549 24 + TSS region transcription start site region 96281
Gm47949 10 127961556 to 127961929 373 + pseudogene predicted gene, 47949
Hsd17b6 10 127990936 to 128007611 16675 - protein coding gene hydroxysteroid (17-beta) dehydrogenase 6
Tssr99828 10 127991267 to 127991284 17 - TSS region transcription start site region 99828
Tssr99829 10 127998326 to 127998329 3 - TSS region transcription start site region 99829
Tssr99830 10 128007589 to 128007628 39 - TSS region transcription start site region 99830
Gm10120 10 128011776 to 128012132 356 + pseudogene predicted gene 10120
Cpgi2379 10 128015074 to 128015452 378 CpG island CpG island 2379
Tssr96282 10 128015157 to 128015175 18 + TSS region transcription start site region 96282
Tssr96283 10 128015186 to 128015231 45 + TSS region transcription start site region 96283
Prim1 10 128015215 to 128030030 14815 + protein coding gene DNA primase, p49 subunit
Tssr96284 10 128015234 to 128015249 15 + TSS region transcription start site region 96284
Tssr96285 10 128033266 to 128033270 4 + TSS region transcription start site region 96285
Tssr96286 10 128033347 to 128033352 5 + TSS region transcription start site region 96286
Tssr96287 10 128033599 to 128033608 9 + TSS region transcription start site region 96287
Tssr96288 10 128033632 to 128033675 43 + TSS region transcription start site region 96288
Tssr96289 10 128033683 to 128033694 11 + TSS region transcription start site region 96289
Cpgi2380 10 128035268 to 128036454 1186 CpG island CpG island 2380
Tssr96290 10 128035330 to 128035338 8 + TSS region transcription start site region 96290
Tssr96291 10 128035339 to 128035355 16 + TSS region transcription start site region 96291
Tssr96292 10 128035363 to 128035380 17 + TSS region transcription start site region 96292
Tssr96293 10 128035480 to 128035520 40 + TSS region transcription start site region 96293
Naca 10 128035575 to 128048637 13062 + protein coding gene nascent polypeptide-associated complex alpha polypeptide
Tssr96294 10 128035587 to 128035594 7 + TSS region transcription start site region 96294
Tssr96295 10 128035604 to 128035613 9 + TSS region transcription start site region 96295
Tssr96296 10 128035625 to 128035635 10 + TSS region transcription start site region 96296
Tssr96297 10 128035637 to 128035655 18 + TSS region transcription start site region 96297
Tssr96298 10 128036218 to 128036239 21 + TSS region transcription start site region 96298
Tssr96299 10 128039408 to 128039421 13 + TSS region transcription start site region 96299
Tssr96300 10 128039472 to 128039482 10 + TSS region transcription start site region 96300
Tssr96301 10 128039593 to 128039606 13 + TSS region transcription start site region 96301
Tssr96302 10 128040290 to 128040298 8 + TSS region transcription start site region 96302
Tssr96303 10 128042370 to 128042382 12 + TSS region transcription start site region 96303
Tssr96304 10 128042509 to 128042519 10 + TSS region transcription start site region 96304
Tssr96305 10 128042690 to 128042695 5 + TSS region transcription start site region 96305
Tssr96306 10 128042833 to 128042847 14 + TSS region transcription start site region 96306
Tssr96307 10 128042892 to 128042911 19 + TSS region transcription start site region 96307
Tssr96308 10 128043118 to 128043128 10 + TSS region transcription start site region 96308
Tssr96309 10 128043209 to 128043220 11 + TSS region transcription start site region 96309
Tssr96310 10 128043443 to 128043454 11 + TSS region transcription start site region 96310