Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:127495170-127930940

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168 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
R3hdm2 10 127380332 to 127499384 119052 + protein coding gene R3H domain containing 2
Tssr96219 10 127498853 to 127498888 35 + TSS region transcription start site region 96219
Tssr96220 10 127501672 to 127501706 34 + TSS region transcription start site region 96220
Stac3 10 127501686 to 127508823 7137 + protein coding gene SH3 and cysteine rich domain 3
Tssr96221 10 127501707 to 127501726 19 + TSS region transcription start site region 96221
Cpgi2359 10 127508002 to 127508326 324 CpG island CpG island 2359
Cpgi2360 10 127509244 to 127509596 352 CpG island CpG island 2360
Cpgi2361 10 127511541 to 127512381 840 CpG island CpG island 2361
Cpgi2362 10 127512697 to 127513257 560 CpG island CpG island 2362
Tssr96222 10 127514951 to 127514979 28 + TSS region transcription start site region 96222
Ndufa4l2 10 127514967 to 127517154 2187 + protein coding gene Ndufa4, mitochondrial complex associated like 2
Tssr96223 10 127515160 to 127515168 8 + TSS region transcription start site region 96223
Tssr96224 10 127515718 to 127515755 37 + TSS region transcription start site region 96224
Tssr96225 10 127515777 to 127515789 12 + TSS region transcription start site region 96225
Shmt2 10 127517123 to 127522444 5321 - protein coding gene serine hydroxymethyltransferase 2 (mitochondrial)
Tssr99780 10 127518922 to 127518935 13 - TSS region transcription start site region 99780
Tssr99781 10 127520776 to 127520784 8 - TSS region transcription start site region 99781
Tssr99782 10 127521124 to 127521134 10 - TSS region transcription start site region 99782
Cpgi2363 10 127521928 to 127522461 533 CpG island CpG island 2363
Tssr99783 10 127522339 to 127522356 17 - TSS region transcription start site region 99783
Tssr99784 10 127522364 to 127522423 59 - TSS region transcription start site region 99784
Tssr99785 10 127522428 to 127522454 26 - TSS region transcription start site region 99785
Cpgi2364 10 127524841 to 127525180 339 CpG island CpG island 2364
Nxph4 10 127525473 to 127534559 9086 - protein coding gene neurexophilin 4
Cpgi2365 10 127525829 to 127527016 1187 CpG island CpG island 2365
Tssr99786 10 127525846 to 127525860 14 - TSS region transcription start site region 99786
Tssr99787 10 127531522 to 127531533 11 - TSS region transcription start site region 99787
Cpgi2366 10 127533657 to 127535470 1813 CpG island CpG island 2366
Tssr99788 10 127534540 to 127534566 26 - TSS region transcription start site region 99788
Tssr99789 10 127534570 to 127534594 24 - TSS region transcription start site region 99789
Lrp1 10 127538161 to 127621148 82987 - protein coding gene low density lipoprotein receptor-related protein 1
Tssr99790 10 127539371 to 127539378 7 - TSS region transcription start site region 99790
Tssr99791 10 127563813 to 127563821 8 - TSS region transcription start site region 99791
Tssr99792 10 127563876 to 127563883 7 - TSS region transcription start site region 99792
Cpgi2367 10 127566569 to 127566912 343 CpG island CpG island 2367
Tssr99793 10 127589606 to 127589614 8 - TSS region transcription start site region 99793
Tssr99794 10 127594388 to 127594438 50 - TSS region transcription start site region 99794
Tssr99795 10 127594559 to 127594591 32 - TSS region transcription start site region 99795
Tssr99796 10 127595431 to 127595445 14 - TSS region transcription start site region 99796
Tssr99797 10 127595505 to 127595531 26 - TSS region transcription start site region 99797
Tssr99798 10 127595575 to 127595586 11 - TSS region transcription start site region 99798
Tssr96226 10 127596210 to 127596248 38 + TSS region transcription start site region 96226
Gm16217 10 127596548 to 127597870 1322 + antisense lncRNA gene predicted gene 16217
Tssr99799 10 127607118 to 127607164 46 - TSS region transcription start site region 99799
Tssr99800 10 127609839 to 127609846 7 - TSS region transcription start site region 99800
Tssr99801 10 127620668 to 127620717 49 - TSS region transcription start site region 99801
Tssr99802 10 127620942 to 127620943 1 - TSS region transcription start site region 99802
Tssr99803 10 127620960 to 127621031 71 - TSS region transcription start site region 99803
Tssr99804 10 127621107 to 127621166 59 - TSS region transcription start site region 99804
Tssr99805 10 127621242 to 127621258 16 - TSS region transcription start site region 99805
Cpgi2368 10 127621294 to 127622282 988 CpG island CpG island 2368
Tssr96227 10 127621298 to 127621323 25 + TSS region transcription start site region 96227
Tssr99806 10 127621651 to 127621682 31 - TSS region transcription start site region 99806
Tssr96228 10 127621780 to 127621801 21 + TSS region transcription start site region 96228
Gm40802 10 127634677 to 127641204 6527 + lncRNA gene predicted gene, 40802
Tssr96229 10 127634695 to 127634708 13 + TSS region transcription start site region 96229
Gm48815 10 127635913 to 127636387 474 - pseudogene predicted gene, 48815
Cpgi2369 10 127642891 to 127643494 603 CpG island CpG island 2369
Tssr96230 10 127642975 to 127643034 59 + TSS region transcription start site region 96230
Stat6 10 127642986 to 127660957 17971 + protein coding gene signal transducer and activator of transcription 6
Tssr96231 10 127643035 to 127643044 9 + TSS region transcription start site region 96231
Tssr96232 10 127643085 to 127643104 19 + TSS region transcription start site region 96232
Tssr96233 10 127643114 to 127643121 7 + TSS region transcription start site region 96233
Tssr96234 10 127643142 to 127643158 16 + TSS region transcription start site region 96234
Tssr96235 10 127643174 to 127643185 11 + TSS region transcription start site region 96235
Tssr99807 10 127643646 to 127643658 12 - TSS region transcription start site region 99807
Tssr99808 10 127643660 to 127643672 12 - TSS region transcription start site region 99808
Gm30989 10 127648256 to 127650695 2439 - lncRNA gene predicted gene, 30989
Tssr96236 10 127658221 to 127658229 8 + TSS region transcription start site region 96236
Tssr96237 10 127658324 to 127658331 7 + TSS region transcription start site region 96237
Tssr96238 10 127658351 to 127658384 33 + TSS region transcription start site region 96238
Nab2 10 127660918 to 127666703 5785 - protein coding gene Ngfi-A binding protein 2
Tssr99809 10 127661415 to 127661424 9 - TSS region transcription start site region 99809
Tssr99810 10 127661435 to 127661458 23 - TSS region transcription start site region 99810
Tssr99811 10 127661653 to 127661667 14 - TSS region transcription start site region 99811
Cpgi2370 10 127662705 to 127662900 195 CpG island CpG island 2370
Tssr99812 10 127663470 to 127663481 11 - TSS region transcription start site region 99812
Gm16229 10 127663839 to 127665484 1645 + antisense lncRNA gene predicted gene 16229
Cpgi2371 10 127666067 to 127667815 1748 CpG island CpG island 2371
Tssr99813 10 127666598 to 127666623 25 - TSS region transcription start site region 99813
Tssr99814 10 127666673 to 127666746 73 - TSS region transcription start site region 99814
Tssr99815 10 127666784 to 127666817 33 - TSS region transcription start site region 99815
Tssr99816 10 127666894 to 127666937 43 - TSS region transcription start site region 99816
Tssr96239 10 127667117 to 127667142 25 + TSS region transcription start site region 96239
1700012D01Rik 10 127667123 to 127668851 1728 + lncRNA gene RIKEN cDNA 1700012D01 gene
Tssr96240 10 127667155 to 127667174 19 + TSS region transcription start site region 96240
Tssr99817 10 127667583 to 127667610 27 - TSS region transcription start site region 99817
Tssr99818 10 127667649 to 127667665 16 - TSS region transcription start site region 99818
Cpgi2372 10 127667991 to 127668461 470 CpG island CpG island 2372
Tssr96241 10 127668391 to 127668409 18 + TSS region transcription start site region 96241
Tssr99819 10 127668521 to 127668589 68 - TSS region transcription start site region 99819
Tssr99820 10 127668872 to 127668883 11 - TSS region transcription start site region 99820
Gm16230 10 127671604 to 127676724 5120 - antisense lncRNA gene predicted gene 16230
Tssr3394 10 127676724 to 127676761 37 - TSS region transcription start site region 3394
Cpgi2373 10 127676748 to 127677685 937 CpG island CpG island 2373
Tssr96242 10 127677043 to 127677059 16 + TSS region transcription start site region 96242
Tssr96243 10 127677064 to 127677099 35 + TSS region transcription start site region 96243
Nemp1 10 127677065 to 127701049 23984 + protein coding gene nuclear envelope integral membrane protein 1
Tssr96244 10 127703465 to 127703517 52 + TSS region transcription start site region 96244
Tssr96245 10 127703523 to 127703552 29 + TSS region transcription start site region 96245
Myo1a 10 127705170 to 127720940 15770 + protein coding gene myosin IA
Tssr3395 10 127705281 to 127705291 10 + TSS region transcription start site region 3395
Tssr96246 10 127706794 to 127706806 12 + TSS region transcription start site region 96246
Tssr96247 10 127706812 to 127706839 27 + TSS region transcription start site region 96247
Cpgi2374 10 127714024 to 127714393 369 CpG island CpG island 2374
Tssr96248 10 127714033 to 127714044 11 + TSS region transcription start site region 96248
Tac2 10 127724478 to 127731768 7290 + protein coding gene tachykinin 2
Tssr96249 10 127725372 to 127725387 15 + TSS region transcription start site region 96249
Tssr96250 10 127725392 to 127725407 15 + TSS region transcription start site region 96250
Tssr96251 10 127728576 to 127728580 4 + TSS region transcription start site region 96251
Cpgi2375 10 127739118 to 127740224 1106 CpG island CpG island 2375
Tssr96252 10 127739516 to 127739592 76 + TSS region transcription start site region 96252
Zbtb39 10 127739538 to 127747349 7811 + protein coding gene zinc finger and BTB domain containing 39
Tssr96253 10 127739611 to 127739623 12 + TSS region transcription start site region 96253
Tssr96254 10 127743760 to 127743777 17 + TSS region transcription start site region 96254
Gpr182 10 127749602 to 127751798 2196 - protein coding gene G protein-coupled receptor 182
Cpgi2376 10 127749954 to 127750682 728 CpG island CpG island 2376
Tssr99821 10 127751673 to 127751684 11 - TSS region transcription start site region 99821
Tssr99822 10 127751707 to 127751737 30 - TSS region transcription start site region 99822
Tssr99823 10 127751739 to 127751751 12 - TSS region transcription start site region 99823
Cpgi2377 10 127756296 to 127756691 395 CpG island CpG island 2377
Rdh1 10 127759726 to 127768299 8573 + protein coding gene retinol dehydrogenase 1 (all trans)
Tssr96255 10 127759734 to 127759746 12 + TSS region transcription start site region 96255
Tssr96256 10 127759754 to 127759766 12 + TSS region transcription start site region 96256
Tssr96257 10 127759780 to 127759801 21 + TSS region transcription start site region 96257
Rdh16f1 10 127759787 to 127792694 32907 + protein coding gene RDH16 family member 1
Tssr96258 10 127759805 to 127759816 11 + TSS region transcription start site region 96258
Tssr96259 10 127776345 to 127776356 11 + TSS region transcription start site region 96259
Tssr96260 10 127776374 to 127776407 33 + TSS region transcription start site region 96260
Rdh9 10 127776405 to 127792697 16292 + protein coding gene retinol dehydrogenase 9
Tssr96261 10 127776436 to 127776443 7 + TSS region transcription start site region 96261
Rdh16 10 127801090 to 127815839 14749 + protein coding gene retinol dehydrogenase 16
Tssr96262 10 127801145 to 127801189 44 + TSS region transcription start site region 96262
Rdh18-ps 10 127824284 to 127843938 19654 + pseudogene retinol dehydrogenase 18, pseudogene
Frct3b 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3b
Frct3d 10 127839705 to 129631127 1791422 QTL fear conditioning traits 3d
Tssr96263 10 127849889 to 127849901 12 + TSS region transcription start site region 96263
Tssr96264 10 127849903 to 127849914 11 + TSS region transcription start site region 96264
Tssr96265 10 127849917 to 127849926 9 + TSS region transcription start site region 96265
Rdh19 10 127849928 to 127861176 11248 + protein coding gene retinol dehydrogenase 19
Tssr96266 10 127850003 to 127850021 18 + TSS region transcription start site region 96266
Tssr96267 10 127850031 to 127850040 9 + TSS region transcription start site region 96267
Tssr3396 10 127850053 to 127850059 6 + TSS region transcription start site region 3396
Tssr96268 10 127866412 to 127866417 5 + TSS region transcription start site region 96268
Tssr96269 10 127866442 to 127866455 13 + TSS region transcription start site region 96269
Tssr96270 10 127866457 to 127866496 39 + TSS region transcription start site region 96270
Rdh16f2 10 127866476 to 127877319 10843 + protein coding gene RDH16 family member 2
Tssr96271 10 127866498 to 127866507 9 + TSS region transcription start site region 96271
Tssr96272 10 127866525 to 127866538 13 + TSS region transcription start site region 96272
Gm31091 10 127875757 to 127878525 2768 - lncRNA gene predicted gene, 31091
Tssr3397 10 127878315 to 127878343 28 - TSS region transcription start site region 3397
Tssr96273 10 127879313 to 127879324 11 + TSS region transcription start site region 96273
Rdh7 10 127884028 to 127888817 4789 - protein coding gene retinol dehydrogenase 7
Tssr99824 10 127884347 to 127884351 4 - TSS region transcription start site region 99824
Tssr99825 10 127885231 to 127885234 3 - TSS region transcription start site region 99825
Tssr99826 10 127888644 to 127888662 18 - TSS region transcription start site region 99826
Tssr99827 10 127888688 to 127888750 62 - TSS region transcription start site region 99827
Tssr96274 10 127893968 to 127893984 16 + TSS region transcription start site region 96274
Tssr96275 10 127898515 to 127898532 17 + TSS region transcription start site region 96275
Sdr9c7 10 127898535 to 127911761 13226 + protein coding gene 4short chain dehydrogenase/reductase family 9C, member 7
Tssr96276 10 127898538 to 127898549 11 + TSS region transcription start site region 96276
Tssr96277 10 127898550 to 127898555 5 + TSS region transcription start site region 96277
Tssr96278 10 127901959 to 127901980 21 + TSS region transcription start site region 96278
Tssr96279 10 127902000 to 127902034 34 + TSS region transcription start site region 96279
Tssr96280 10 127902041 to 127902056 15 + TSS region transcription start site region 96280
Opfaq7 10 127910449 to 129630506 1720057 QTL open field activity QTL 7
Gm40804 10 127913517 to 127925501 11984 - lncRNA gene predicted gene, 40804
Gm15905 10 127921069 to 127921366 297 + pseudogene predicted gene 15905