Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:127275334-127565348

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dctn2 10 127266368 to 127281950 15582 + protein coding gene dynactin 2
Mbd6 10 127281956 to 127289018 7062 - protein coding gene methyl-CpG binding domain protein 6
Tssr99752 10 127282564 to 127282585 21 - TSS region transcription start site region 99752
Tssr99753 10 127286251 to 127286263 12 - TSS region transcription start site region 99753
Tssr99754 10 127286424 to 127286431 7 - TSS region transcription start site region 99754
Tssr96176 10 127288080 to 127288085 5 + TSS region transcription start site region 96176
Cpgi2349 10 127288297 to 127289583 1286 CpG island CpG island 2349
Tssr99755 10 127288415 to 127288430 15 - TSS region transcription start site region 99755
Tssr99756 10 127288433 to 127288460 27 - TSS region transcription start site region 99756
Tssr96177 10 127288490 to 127288521 31 + TSS region transcription start site region 96177
Gm20492 10 127288514 to 127289681 1167 + lncRNA gene predicted gene 20492
Tssr96178 10 127288528 to 127288551 23 + TSS region transcription start site region 96178
Tssr99757 10 127288610 to 127288633 23 - TSS region transcription start site region 99757
Tssr99758 10 127288759 to 127288774 15 - TSS region transcription start site region 99758
Tssr99759 10 127288819 to 127288846 27 - TSS region transcription start site region 99759
Tssr99760 10 127288851 to 127288918 67 - TSS region transcription start site region 99760
Tssr3392 10 127288910 to 127288951 41 + TSS region transcription start site region 3392
Tssr99761 10 127288965 to 127288997 32 - TSS region transcription start site region 99761
Tssr99762 10 127288999 to 127289035 36 - TSS region transcription start site region 99762
Tssr99763 10 127289056 to 127289067 11 - TSS region transcription start site region 99763
Gm4189 10 127289696 to 127290788 1092 - unclassified non-coding RNA gene predicted gene 4189
Tssr96179 10 127290003 to 127290014 11 + TSS region transcription start site region 96179
Cpgi2350 10 127290325 to 127291223 898 CpG island CpG island 2350
Tssr99764 10 127290338 to 127290360 22 - TSS region transcription start site region 99764
Tssr96180 10 127290786 to 127290803 17 + TSS region transcription start site region 96180
Ddit3 10 127290793 to 127296291 5498 + protein coding gene DNA-damage inducible transcript 3
Tssr96181 10 127295444 to 127295448 4 + TSS region transcription start site region 96181
Mars 10 127296221 to 127311786 15565 - protein coding gene methionine-tRNA synthetase
Tssr99765 10 127302807 to 127302812 5 - TSS region transcription start site region 99765
Cpgi2351 10 127311160 to 127312046 886 CpG island CpG island 2351
Tssr99766 10 127311617 to 127311722 105 - TSS region transcription start site region 99766
Tssr99767 10 127311740 to 127311763 23 - TSS region transcription start site region 99767
Gm6283 10 127313149 to 127314148 999 + pseudogene predicted gene 6283
Tssr96182 10 127321866 to 127321884 18 + TSS region transcription start site region 96182
Tssr96183 10 127321907 to 127321912 5 + TSS region transcription start site region 96183
Tssr96184 10 127321915 to 127321930 15 + TSS region transcription start site region 96184
Arhgap9 10 127321964 to 127329943 7979 + protein coding gene Rho GTPase activating protein 9
Tssr96185 10 127322001 to 127322026 25 + TSS region transcription start site region 96185
Tssr96186 10 127322282 to 127322297 15 + TSS region transcription start site region 96186
Tssr96187 10 127322914 to 127322924 10 + TSS region transcription start site region 96187
Tssr99768 10 127323604 to 127323621 17 - TSS region transcription start site region 99768
Tssr96188 10 127323700 to 127323736 36 + TSS region transcription start site region 96188
Tssr96189 10 127323741 to 127323781 40 + TSS region transcription start site region 96189
Tssr96190 10 127323788 to 127323794 6 + TSS region transcription start site region 96190
Tssr96191 10 127324335 to 127324363 28 + TSS region transcription start site region 96191
Tssr96192 10 127324773 to 127324797 24 + TSS region transcription start site region 96192
Tssr96193 10 127325635 to 127325651 16 + TSS region transcription start site region 96193
Tssr96194 10 127325655 to 127325675 20 + TSS region transcription start site region 96194
Tssr96195 10 127325761 to 127325782 21 + TSS region transcription start site region 96195
Tssr96196 10 127326069 to 127326099 30 + TSS region transcription start site region 96196
Cpgi2352 10 127326086 to 127327261 1175 CpG island CpG island 2352
Tssr96197 10 127326113 to 127326120 7 + TSS region transcription start site region 96197
Gli1 10 127329882 to 127341579 11697 - protein coding gene GLI-Kruppel family member GLI1
Gm47200 10 127332391 to 127370406 38015 + antisense lncRNA gene predicted gene, 47200
Cpgi2353 10 127332425 to 127332705 280 CpG island CpG island 2353
Cpgi2354 10 127333504 to 127333835 331 CpG island CpG island 2354
Tssr99769 10 127336130 to 127336133 3 - TSS region transcription start site region 99769
Tssr99770 10 127336896 to 127336904 8 - TSS region transcription start site region 99770
Cpgi2355 10 127339413 to 127339586 173 CpG island CpG island 2355
Cpgi2356 10 127341476 to 127341844 368 CpG island CpG island 2356
Tssr99771 10 127341583 to 127341614 31 - TSS region transcription start site region 99771
Tssr99772 10 127341860 to 127341918 58 - TSS region transcription start site region 99772
Tssr99773 10 127341965 to 127341976 11 - TSS region transcription start site region 99773
Tssr99774 10 127349102 to 127349105 3 - TSS region transcription start site region 99774
Inhbe 10 127349402 to 127351772 2370 - protein coding gene inhibin beta-E
Cpgi2357 10 127350599 to 127350923 324 CpG island CpG island 2357
Tssr99775 10 127351753 to 127351764 11 - TSS region transcription start site region 99775
Tssr99776 10 127351799 to 127351825 26 - TSS region transcription start site region 99776
Inhbc 10 127356322 to 127370431 14109 - protein coding gene inhibin beta-C
Tssr3393 10 127368946 to 127368950 4 + TSS region transcription start site region 3393
Tssr99777 10 127370492 to 127370518 26 - TSS region transcription start site region 99777
Tssr99778 10 127370535 to 127370542 7 - TSS region transcription start site region 99778
Tssr99779 10 127370550 to 127370561 11 - TSS region transcription start site region 99779
Cpgi2358 10 127380128 to 127381431 1303 CpG island CpG island 2358
R3hdm2 10 127380332 to 127499384 119052 + protein coding gene R3H domain containing 2
Tssr96198 10 127380591 to 127380702 111 + TSS region transcription start site region 96198
Tssr96199 10 127380815 to 127380878 63 + TSS region transcription start site region 96199
Tssr96200 10 127390309 to 127390336 27 + TSS region transcription start site region 96200
8430401P03Rik 10 127394169 to 127395196 1027 unclassified gene RIKEN cDNA 8430401P03 gene
Gm23819 10 127404284 to 127404392 108 - snRNA gene predicted gene, 23819
Tssr96201 10 127420325 to 127420333 8 + TSS region transcription start site region 96201
Tssr96202 10 127420334 to 127420348 14 + TSS region transcription start site region 96202
Tssr96203 10 127420353 to 127420372 19 + TSS region transcription start site region 96203
Tssr96204 10 127420384 to 127420395 11 + TSS region transcription start site region 96204
Tssr96205 10 127420820 to 127420840 20 + TSS region transcription start site region 96205
Tssr96206 10 127420885 to 127420916 31 + TSS region transcription start site region 96206
Tssr96207 10 127421180 to 127421203 23 + TSS region transcription start site region 96207
Tssr96208 10 127421208 to 127421235 27 + TSS region transcription start site region 96208
Tssr96209 10 127452721 to 127452743 22 + TSS region transcription start site region 96209
Tssr96210 10 127471775 to 127471795 20 + TSS region transcription start site region 96210
Tssr96211 10 127471809 to 127471819 10 + TSS region transcription start site region 96211
Tssr96212 10 127471828 to 127471837 9 + TSS region transcription start site region 96212
Tssr96213 10 127476521 to 127476532 11 + TSS region transcription start site region 96213
Tssr96214 10 127476574 to 127476593 19 + TSS region transcription start site region 96214
Tssr96215 10 127481647 to 127481672 25 + TSS region transcription start site region 96215
Tssr96216 10 127481690 to 127481699 9 + TSS region transcription start site region 96216
Tssr96217 10 127487811 to 127487831 20 + TSS region transcription start site region 96217
Tssr96218 10 127493181 to 127493208 27 + TSS region transcription start site region 96218
Tssr96219 10 127498853 to 127498888 35 + TSS region transcription start site region 96219
Tssr96220 10 127501672 to 127501706 34 + TSS region transcription start site region 96220
Stac3 10 127501686 to 127508823 7137 + protein coding gene SH3 and cysteine rich domain 3
Tssr96221 10 127501707 to 127501726 19 + TSS region transcription start site region 96221
Cpgi2359 10 127508002 to 127508326 324 CpG island CpG island 2359
Cpgi2360 10 127509244 to 127509596 352 CpG island CpG island 2360
Cpgi2361 10 127511541 to 127512381 840 CpG island CpG island 2361
Cpgi2362 10 127512697 to 127513257 560 CpG island CpG island 2362
Tssr96222 10 127514951 to 127514979 28 + TSS region transcription start site region 96222
Ndufa4l2 10 127514967 to 127517154 2187 + protein coding gene Ndufa4, mitochondrial complex associated like 2
Tssr96223 10 127515160 to 127515168 8 + TSS region transcription start site region 96223
Tssr96224 10 127515718 to 127515755 37 + TSS region transcription start site region 96224
Tssr96225 10 127515777 to 127515789 12 + TSS region transcription start site region 96225
Shmt2 10 127517123 to 127522444 5321 - protein coding gene serine hydroxymethyltransferase 2 (mitochondrial)
Tssr99780 10 127518922 to 127518935 13 - TSS region transcription start site region 99780
Tssr99781 10 127520776 to 127520784 8 - TSS region transcription start site region 99781
Tssr99782 10 127521124 to 127521134 10 - TSS region transcription start site region 99782
Cpgi2363 10 127521928 to 127522461 533 CpG island CpG island 2363
Tssr99783 10 127522339 to 127522356 17 - TSS region transcription start site region 99783
Tssr99784 10 127522364 to 127522423 59 - TSS region transcription start site region 99784
Tssr99785 10 127522428 to 127522454 26 - TSS region transcription start site region 99785
Cpgi2364 10 127524841 to 127525180 339 CpG island CpG island 2364
Nxph4 10 127525473 to 127534559 9086 - protein coding gene neurexophilin 4
Cpgi2365 10 127525829 to 127527016 1187 CpG island CpG island 2365
Tssr99786 10 127525846 to 127525860 14 - TSS region transcription start site region 99786
Tssr99787 10 127531522 to 127531533 11 - TSS region transcription start site region 99787
Cpgi2366 10 127533657 to 127535470 1813 CpG island CpG island 2366
Tssr99788 10 127534540 to 127534566 26 - TSS region transcription start site region 99788
Tssr99789 10 127534570 to 127534594 24 - TSS region transcription start site region 99789
Lrp1 10 127538161 to 127621148 82987 - protein coding gene low density lipoprotein receptor-related protein 1
Tssr99790 10 127539371 to 127539378 7 - TSS region transcription start site region 99790
Tssr99791 10 127563813 to 127563821 8 - TSS region transcription start site region 99791
Tssr99792 10 127563876 to 127563883 7 - TSS region transcription start site region 99792