Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:127152707-127332741

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141 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46185 10 127151460 to 127166775 15315 - lncRNA gene predicted gene, 46185
Tssr99720 10 127162922 to 127162948 26 - TSS region transcription start site region 99720
Tssr96142 10 127163389 to 127163417 28 + TSS region transcription start site region 96142
Tssr96143 10 127163538 to 127163548 10 + TSS region transcription start site region 96143
Gm46184 10 127164173 to 127164935 762 - lncRNA gene predicted gene, 46184
Cpgi2339 10 127164768 to 127166653 1885 CpG island CpG island 2339
Tssr96144 10 127164771 to 127164786 15 + TSS region transcription start site region 96144
Tssr96145 10 127165118 to 127165225 107 + TSS region transcription start site region 96145
B4galnt1 10 127165225 to 127172330 7105 + protein coding gene beta-1,4-N-acetyl-galactosaminyl transferase 1
Tssr96146 10 127165252 to 127165263 11 + TSS region transcription start site region 96146
Tssr96147 10 127165292 to 127165303 11 + TSS region transcription start site region 96147
Tssr96148 10 127165313 to 127165327 14 + TSS region transcription start site region 96148
Tssr96149 10 127165340 to 127165363 23 + TSS region transcription start site region 96149
Tssr96150 10 127165365 to 127165398 33 + TSS region transcription start site region 96150
Tssr96151 10 127165399 to 127165402 3 + TSS region transcription start site region 96151
Tssr96152 10 127165413 to 127165424 11 + TSS region transcription start site region 96152
Tssr96153 10 127165502 to 127165503 1 + TSS region transcription start site region 96153
Tssr99721 10 127165516 to 127165530 14 - TSS region transcription start site region 99721
Tssr99722 10 127165679 to 127165692 13 - TSS region transcription start site region 99722
Tssr96154 10 127165787 to 127165804 17 + TSS region transcription start site region 96154
Tssr96155 10 127165805 to 127165822 17 + TSS region transcription start site region 96155
Tssr96156 10 127165825 to 127165900 75 + TSS region transcription start site region 96156
Tssr96157 10 127166024 to 127166043 19 + TSS region transcription start site region 96157
Tssr99723 10 127166256 to 127166272 16 - TSS region transcription start site region 99723
Tssr99724 10 127166316 to 127166340 24 - TSS region transcription start site region 99724
Tssr99725 10 127166343 to 127166358 15 - TSS region transcription start site region 99725
Tssr96158 10 127166485 to 127166503 18 + TSS region transcription start site region 96158
Tssr96159 10 127166688 to 127166700 12 + TSS region transcription start site region 96159
Tssr99726 10 127166983 to 127167003 20 - TSS region transcription start site region 99726
Tssr96160 10 127167358 to 127167376 18 + TSS region transcription start site region 96160
Tssr96161 10 127167484 to 127167506 22 + TSS region transcription start site region 96161
Tssr96162 10 127167669 to 127167684 15 + TSS region transcription start site region 96162
Tssr96163 10 127167771 to 127167785 14 + TSS region transcription start site region 96163
Cpgi2340 10 127170002 to 127171344 1342 CpG island CpG island 2340
Tssr96164 10 127170945 to 127170948 3 + TSS region transcription start site region 96164
Tssr96165 10 127172032 to 127172046 14 + TSS region transcription start site region 96165
Slc26a10 10 127172313 to 127180726 8413 - protein coding gene solute carrier family 26, member 10
Tssr99727 10 127177000 to 127177030 30 - TSS region transcription start site region 99727
Cpgi2341 10 127177665 to 127179063 1398 CpG island CpG island 2341
Tssr99728 10 127179095 to 127179097 2 - TSS region transcription start site region 99728
Cpgi2342 10 127180152 to 127180559 407 CpG island CpG island 2342
Tssr99729 10 127180579 to 127180583 4 - TSS region transcription start site region 99729
Tssr96166 10 127181808 to 127181837 29 + TSS region transcription start site region 96166
Tssr96167 10 127181844 to 127181855 11 + TSS region transcription start site region 96167
Tssr96168 10 127181912 to 127181922 10 + TSS region transcription start site region 96168
Arhgef25 10 127182525 to 127190083 7558 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 25
Tssr96169 10 127187778 to 127187790 12 + TSS region transcription start site region 96169
Cpgi2343 10 127188207 to 127189624 1417 CpG island CpG island 2343
Tssr99730 10 127188731 to 127188763 32 - TSS region transcription start site region 99730
Tssr99731 10 127188776 to 127188806 30 - TSS region transcription start site region 99731
Tssr99732 10 127188828 to 127188837 9 - TSS region transcription start site region 99732
Cpgi2344 10 127189837 to 127190160 323 CpG island CpG island 2344
Tssr99733 10 127189981 to 127190071 90 - TSS region transcription start site region 99733
Dtx3 10 127190378 to 127195728 5350 - protein coding gene deltex 3, E3 ubiquitin ligase
Tssr99734 10 127191544 to 127191556 12 - TSS region transcription start site region 99734
Tssr99735 10 127193133 to 127193160 27 - TSS region transcription start site region 99735
Cpgi2345 10 127195131 to 127195767 636 CpG island CpG island 2345
Tssr99736 10 127195198 to 127195222 24 - TSS region transcription start site region 99736
Tssr96170 10 127195240 to 127195298 58 + TSS region transcription start site region 96170
F420014N23Rik 10 127195249 to 127202643 7394 + lincRNA gene RIKEN cDNA F420014N23 gene
Tssr99737 10 127195713 to 127195739 26 - TSS region transcription start site region 99737
Pip4k2c 10 127197067 to 127211585 14518 - protein coding gene phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
Cpgi2346 10 127210982 to 127211886 904 CpG island CpG island 2346
Tssr99738 10 127211528 to 127211626 98 - TSS region transcription start site region 99738
Kif5a 10 127225696 to 127263348 37652 - protein coding gene kinesin family member 5A
Tssr99739 10 127230684 to 127230690 6 - TSS region transcription start site region 99739
Tssr99740 10 127230738 to 127230771 33 - TSS region transcription start site region 99740
Tssr96171 10 127242707 to 127242741 34 + TSS region transcription start site region 96171
Tssr99741 10 127242798 to 127242809 11 - TSS region transcription start site region 99741
Tssr99742 10 127243440 to 127243452 12 - TSS region transcription start site region 99742
Tssr99743 10 127243710 to 127243756 46 - TSS region transcription start site region 99743
Tssr99744 10 127247619 to 127247630 11 - TSS region transcription start site region 99744
Cpgi2347 10 127262551 to 127263429 878 CpG island CpG island 2347
Tssr99745 10 127263043 to 127263050 7 - TSS region transcription start site region 99745
Tssr99746 10 127263063 to 127263101 38 - TSS region transcription start site region 99746
Tssr99747 10 127263102 to 127263133 31 - TSS region transcription start site region 99747
Tssr99748 10 127263147 to 127263156 9 - TSS region transcription start site region 99748
Tssr99749 10 127263315 to 127263345 30 - TSS region transcription start site region 99749
Tssr99750 10 127263346 to 127263368 22 - TSS region transcription start site region 99750
Gm40800 10 127264304 to 127265744 1440 + lncRNA gene predicted gene, 40800
Cpgi2348 10 127266136 to 127267032 896 CpG island CpG island 2348
Tssr96172 10 127266256 to 127266292 36 + TSS region transcription start site region 96172
Tssr96173 10 127266297 to 127266306 9 + TSS region transcription start site region 96173
Tssr96174 10 127266324 to 127266442 118 + TSS region transcription start site region 96174
Dctn2 10 127266368 to 127281950 15582 + protein coding gene dynactin 2
Tssr99751 10 127267026 to 127267046 20 - TSS region transcription start site region 99751
Tssr96175 10 127274984 to 127274994 10 + TSS region transcription start site region 96175
Mbd6 10 127281956 to 127289018 7062 - protein coding gene methyl-CpG binding domain protein 6
Tssr99752 10 127282564 to 127282585 21 - TSS region transcription start site region 99752
Tssr99753 10 127286251 to 127286263 12 - TSS region transcription start site region 99753
Tssr99754 10 127286424 to 127286431 7 - TSS region transcription start site region 99754
Tssr96176 10 127288080 to 127288085 5 + TSS region transcription start site region 96176
Cpgi2349 10 127288297 to 127289583 1286 CpG island CpG island 2349
Tssr99755 10 127288415 to 127288430 15 - TSS region transcription start site region 99755
Tssr99756 10 127288433 to 127288460 27 - TSS region transcription start site region 99756
Tssr96177 10 127288490 to 127288521 31 + TSS region transcription start site region 96177
Gm20492 10 127288514 to 127289681 1167 + lncRNA gene predicted gene 20492
Tssr96178 10 127288528 to 127288551 23 + TSS region transcription start site region 96178
Tssr99757 10 127288610 to 127288633 23 - TSS region transcription start site region 99757
Tssr99758 10 127288759 to 127288774 15 - TSS region transcription start site region 99758
Tssr99759 10 127288819 to 127288846 27 - TSS region transcription start site region 99759
Tssr99760 10 127288851 to 127288918 67 - TSS region transcription start site region 99760
Tssr3392 10 127288910 to 127288951 41 + TSS region transcription start site region 3392
Tssr99761 10 127288965 to 127288997 32 - TSS region transcription start site region 99761
Tssr99762 10 127288999 to 127289035 36 - TSS region transcription start site region 99762
Tssr99763 10 127289056 to 127289067 11 - TSS region transcription start site region 99763
Gm4189 10 127289696 to 127290788 1092 - unclassified non-coding RNA gene predicted gene 4189
Tssr96179 10 127290003 to 127290014 11 + TSS region transcription start site region 96179
Cpgi2350 10 127290325 to 127291223 898 CpG island CpG island 2350
Tssr99764 10 127290338 to 127290360 22 - TSS region transcription start site region 99764
Tssr96180 10 127290786 to 127290803 17 + TSS region transcription start site region 96180
Ddit3 10 127290793 to 127296291 5498 + protein coding gene DNA-damage inducible transcript 3
Tssr96181 10 127295444 to 127295448 4 + TSS region transcription start site region 96181
Mars 10 127296221 to 127311786 15565 - protein coding gene methionine-tRNA synthetase
Tssr99765 10 127302807 to 127302812 5 - TSS region transcription start site region 99765
Cpgi2351 10 127311160 to 127312046 886 CpG island CpG island 2351
Tssr99766 10 127311617 to 127311722 105 - TSS region transcription start site region 99766
Tssr99767 10 127311740 to 127311763 23 - TSS region transcription start site region 99767
Gm6283 10 127313149 to 127314148 999 + pseudogene predicted gene 6283
Tssr96182 10 127321866 to 127321884 18 + TSS region transcription start site region 96182
Tssr96183 10 127321907 to 127321912 5 + TSS region transcription start site region 96183
Tssr96184 10 127321915 to 127321930 15 + TSS region transcription start site region 96184
Arhgap9 10 127321964 to 127329943 7979 + protein coding gene Rho GTPase activating protein 9
Tssr96185 10 127322001 to 127322026 25 + TSS region transcription start site region 96185
Tssr96186 10 127322282 to 127322297 15 + TSS region transcription start site region 96186
Tssr96187 10 127322914 to 127322924 10 + TSS region transcription start site region 96187
Tssr99768 10 127323604 to 127323621 17 - TSS region transcription start site region 99768
Tssr96188 10 127323700 to 127323736 36 + TSS region transcription start site region 96188
Tssr96189 10 127323741 to 127323781 40 + TSS region transcription start site region 96189
Tssr96190 10 127323788 to 127323794 6 + TSS region transcription start site region 96190
Tssr96191 10 127324335 to 127324363 28 + TSS region transcription start site region 96191
Tssr96192 10 127324773 to 127324797 24 + TSS region transcription start site region 96192
Tssr96193 10 127325635 to 127325651 16 + TSS region transcription start site region 96193
Tssr96194 10 127325655 to 127325675 20 + TSS region transcription start site region 96194
Tssr96195 10 127325761 to 127325782 21 + TSS region transcription start site region 96195
Tssr96196 10 127326069 to 127326099 30 + TSS region transcription start site region 96196
Cpgi2352 10 127326086 to 127327261 1175 CpG island CpG island 2352
Tssr96197 10 127326113 to 127326120 7 + TSS region transcription start site region 96197
Gli1 10 127329882 to 127341579 11697 - protein coding gene GLI-Kruppel family member GLI1
Gm47200 10 127332391 to 127370406 38015 + antisense lncRNA gene predicted gene, 47200
Cpgi2353 10 127332425 to 127332705 280 CpG island CpG island 2353