Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:127090340-127240363

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Agap2 10 127075284 to 127093169 17885 + protein coding gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
Cpgi2337 10 127090578 to 127092210 1632 CpG island CpG island 2337
Tssr96134 10 127092667 to 127092688 21 + TSS region transcription start site region 96134
Tssr96135 10 127093037 to 127093041 4 + TSS region transcription start site region 96135
Os9 10 127095650 to 127121131 25481 - protein coding gene amplified in osteosarcoma
Gm16491 10 127097704 to 127101167 3463 unclassified gene predicted gene 16491
Gm40799 10 127107362 to 127113573 6211 - lncRNA gene predicted gene, 40799
Cpgi2338 10 127120485 to 127121377 892 CpG island CpG island 2338
Tssr99716 10 127121125 to 127121149 24 - TSS region transcription start site region 99716
Tssr96136 10 127129581 to 127129603 22 + TSS region transcription start site region 96136
Tssr96137 10 127129640 to 127129652 12 + TSS region transcription start site region 96137
Gm4178 10 127132848 to 127133496 648 - pseudogene predicted gene 4178
Tssr99717 10 127136614 to 127136634 20 - TSS region transcription start site region 99717
Tssr99718 10 127136645 to 127136654 9 - TSS region transcription start site region 99718
Gm23664 10 127138529 to 127138617 88 - snRNA gene predicted gene, 23664
Tssr96138 10 127141170 to 127141182 12 + TSS region transcription start site region 96138
Tssr99719 10 127145456 to 127145459 3 - TSS region transcription start site region 99719
Tssr96139 10 127149372 to 127149380 8 + TSS region transcription start site region 96139
Tssr96140 10 127150706 to 127150715 9 + TSS region transcription start site region 96140
Tssr96141 10 127150740 to 127150746 6 + TSS region transcription start site region 96141
Gm46185 10 127151460 to 127166775 15315 - lncRNA gene predicted gene, 46185
Tssr99720 10 127162922 to 127162948 26 - TSS region transcription start site region 99720
Tssr96142 10 127163389 to 127163417 28 + TSS region transcription start site region 96142
Tssr96143 10 127163538 to 127163548 10 + TSS region transcription start site region 96143
Gm46184 10 127164173 to 127164935 762 - lncRNA gene predicted gene, 46184
Cpgi2339 10 127164768 to 127166653 1885 CpG island CpG island 2339
Tssr96144 10 127164771 to 127164786 15 + TSS region transcription start site region 96144
Tssr96145 10 127165118 to 127165225 107 + TSS region transcription start site region 96145
B4galnt1 10 127165225 to 127172330 7105 + protein coding gene beta-1,4-N-acetyl-galactosaminyl transferase 1
Tssr96146 10 127165252 to 127165263 11 + TSS region transcription start site region 96146
Tssr96147 10 127165292 to 127165303 11 + TSS region transcription start site region 96147
Tssr96148 10 127165313 to 127165327 14 + TSS region transcription start site region 96148
Tssr96149 10 127165340 to 127165363 23 + TSS region transcription start site region 96149
Tssr96150 10 127165365 to 127165398 33 + TSS region transcription start site region 96150
Tssr96151 10 127165399 to 127165402 3 + TSS region transcription start site region 96151
Tssr96152 10 127165413 to 127165424 11 + TSS region transcription start site region 96152
Tssr96153 10 127165502 to 127165503 1 + TSS region transcription start site region 96153
Tssr99721 10 127165516 to 127165530 14 - TSS region transcription start site region 99721
Tssr99722 10 127165679 to 127165692 13 - TSS region transcription start site region 99722
Tssr96154 10 127165787 to 127165804 17 + TSS region transcription start site region 96154
Tssr96155 10 127165805 to 127165822 17 + TSS region transcription start site region 96155
Tssr96156 10 127165825 to 127165900 75 + TSS region transcription start site region 96156
Tssr96157 10 127166024 to 127166043 19 + TSS region transcription start site region 96157
Tssr99723 10 127166256 to 127166272 16 - TSS region transcription start site region 99723
Tssr99724 10 127166316 to 127166340 24 - TSS region transcription start site region 99724
Tssr99725 10 127166343 to 127166358 15 - TSS region transcription start site region 99725
Tssr96158 10 127166485 to 127166503 18 + TSS region transcription start site region 96158
Tssr96159 10 127166688 to 127166700 12 + TSS region transcription start site region 96159
Tssr99726 10 127166983 to 127167003 20 - TSS region transcription start site region 99726
Tssr96160 10 127167358 to 127167376 18 + TSS region transcription start site region 96160
Tssr96161 10 127167484 to 127167506 22 + TSS region transcription start site region 96161
Tssr96162 10 127167669 to 127167684 15 + TSS region transcription start site region 96162
Tssr96163 10 127167771 to 127167785 14 + TSS region transcription start site region 96163
Cpgi2340 10 127170002 to 127171344 1342 CpG island CpG island 2340
Tssr96164 10 127170945 to 127170948 3 + TSS region transcription start site region 96164
Tssr96165 10 127172032 to 127172046 14 + TSS region transcription start site region 96165
Slc26a10 10 127172313 to 127180726 8413 - protein coding gene solute carrier family 26, member 10
Tssr99727 10 127177000 to 127177030 30 - TSS region transcription start site region 99727
Cpgi2341 10 127177665 to 127179063 1398 CpG island CpG island 2341
Tssr99728 10 127179095 to 127179097 2 - TSS region transcription start site region 99728
Cpgi2342 10 127180152 to 127180559 407 CpG island CpG island 2342
Tssr99729 10 127180579 to 127180583 4 - TSS region transcription start site region 99729
Tssr96166 10 127181808 to 127181837 29 + TSS region transcription start site region 96166
Tssr96167 10 127181844 to 127181855 11 + TSS region transcription start site region 96167
Tssr96168 10 127181912 to 127181922 10 + TSS region transcription start site region 96168
Arhgef25 10 127182525 to 127190083 7558 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 25
Tssr96169 10 127187778 to 127187790 12 + TSS region transcription start site region 96169
Cpgi2343 10 127188207 to 127189624 1417 CpG island CpG island 2343
Tssr99730 10 127188731 to 127188763 32 - TSS region transcription start site region 99730
Tssr99731 10 127188776 to 127188806 30 - TSS region transcription start site region 99731
Tssr99732 10 127188828 to 127188837 9 - TSS region transcription start site region 99732
Cpgi2344 10 127189837 to 127190160 323 CpG island CpG island 2344
Tssr99733 10 127189981 to 127190071 90 - TSS region transcription start site region 99733
Dtx3 10 127190378 to 127195728 5350 - protein coding gene deltex 3, E3 ubiquitin ligase
Tssr99734 10 127191544 to 127191556 12 - TSS region transcription start site region 99734
Tssr99735 10 127193133 to 127193160 27 - TSS region transcription start site region 99735
Cpgi2345 10 127195131 to 127195767 636 CpG island CpG island 2345
Tssr99736 10 127195198 to 127195222 24 - TSS region transcription start site region 99736
Tssr96170 10 127195240 to 127195298 58 + TSS region transcription start site region 96170
F420014N23Rik 10 127195249 to 127202643 7394 + lincRNA gene RIKEN cDNA F420014N23 gene
Tssr99737 10 127195713 to 127195739 26 - TSS region transcription start site region 99737
Pip4k2c 10 127197067 to 127211585 14518 - protein coding gene phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
Cpgi2346 10 127210982 to 127211886 904 CpG island CpG island 2346
Tssr99738 10 127211528 to 127211626 98 - TSS region transcription start site region 99738
Kif5a 10 127225696 to 127263348 37652 - protein coding gene kinesin family member 5A
Tssr99739 10 127230684 to 127230690 6 - TSS region transcription start site region 99739
Tssr99740 10 127230738 to 127230771 33 - TSS region transcription start site region 99740