Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:126997598-130477616

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1058 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Frct3c 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3c
Frct3 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3
Frct3a 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3a
Opfaq10 10 125797802 to 129630506 3832704 QTL open field activity QTL 10
Ctdsp2 10 126978717 to 126999975 21258 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
Mir546 10 126998440 to 126998560 120 + miRNA gene microRNA 546
Tssr96104 10 126998937 to 126998952 15 + TSS region transcription start site region 96104
Avil 10 127000709 to 127020994 20285 + protein coding gene advillin
Tssr96105 10 127000732 to 127000747 15 + TSS region transcription start site region 96105
Cpgi2327 10 127009673 to 127010175 502 CpG island CpG island 2327
Cpgi2328 10 127018443 to 127018665 222 CpG island CpG island 2328
Tsfm 10 127022332 to 127030814 8482 - protein coding gene Ts translation elongation factor, mitochondrial
Cpgi2329 10 127030356 to 127031002 646 CpG island CpG island 2329
Tssr99703 10 127030789 to 127030812 23 - TSS region transcription start site region 99703
Tssr99704 10 127030813 to 127030838 25 - TSS region transcription start site region 99704
Eef1akmt3 10 127032806 to 127042026 9220 - protein coding gene EEF1A lysine methyltransferase 3
Cpgi2330 10 127040823 to 127042270 1447 CpG island CpG island 2330
Mettl1 10 127041643 to 127046365 4722 + protein coding gene methyltransferase like 1
Tssr96106 10 127041931 to 127041972 41 + TSS region transcription start site region 96106
Tssr96107 10 127048235 to 127048246 11 + TSS region transcription start site region 96107
Cyp27b1 10 127048250 to 127053006 4756 + protein coding gene cytochrome P450, family 27, subfamily b, polypeptide 1
Cpgi2331 10 127048950 to 127050272 1322 CpG island CpG island 2331
March9 10 127056050 to 127060184 4134 - protein coding gene membrane-associated ring finger (C3HC4) 9
Cpgi2332 10 127059150 to 127060808 1658 CpG island CpG island 2332
Tssr96108 10 127059358 to 127059371 13 + TSS region transcription start site region 96108
Tssr99705 10 127060135 to 127060148 13 - TSS region transcription start site region 99705
Tssr99706 10 127060163 to 127060206 43 - TSS region transcription start site region 99706
Tssr99707 10 127060258 to 127060306 48 - TSS region transcription start site region 99707
Tssr99708 10 127060338 to 127060387 49 - TSS region transcription start site region 99708
Cpgi2333 10 127063241 to 127064393 1152 CpG island CpG island 2333
Tssr96109 10 127063527 to 127063538 11 + TSS region transcription start site region 96109
Cdk4 10 127063535 to 127067288 3753 + protein coding gene cyclin-dependent kinase 4
Tssr96110 10 127063548 to 127063597 49 + TSS region transcription start site region 96110
Tssr96111 10 127063599 to 127063655 56 + TSS region transcription start site region 96111
Tssr96112 10 127063656 to 127063670 14 + TSS region transcription start site region 96112
Tssr96113 10 127064206 to 127064244 38 + TSS region transcription start site region 96113
Tssr96114 10 127064286 to 127064310 24 + TSS region transcription start site region 96114
Tssr96115 10 127066154 to 127066182 28 + TSS region transcription start site region 96115
Tssr96116 10 127067086 to 127067107 21 + TSS region transcription start site region 96116
Tssr96117 10 127067168 to 127067181 13 + TSS region transcription start site region 96117
Tspan31 10 127067290 to 127070261 2971 - protein coding gene tetraspanin 31
Tssr99709 10 127067517 to 127067538 21 - TSS region transcription start site region 99709
Tssr99710 10 127067632 to 127067660 28 - TSS region transcription start site region 99710
Tssr99711 10 127067732 to 127067760 28 - TSS region transcription start site region 99711
Tssr99712 10 127067826 to 127067842 16 - TSS region transcription start site region 99712
Tssr99713 10 127069096 to 127069109 13 - TSS region transcription start site region 99713
Cpgi2334 10 127070118 to 127071073 955 CpG island CpG island 2334
Tssr99714 10 127070232 to 127070249 17 - TSS region transcription start site region 99714
Tssr99715 10 127070254 to 127070302 48 - TSS region transcription start site region 99715
Tssr96118 10 127070374 to 127070421 47 + TSS region transcription start site region 96118
A730063M14Rik 10 127070481 to 127071101 620 + lincRNA gene RIKEN cDNA A730063M14 gene
Tssr96119 10 127075265 to 127075325 60 + TSS region transcription start site region 96119
Agap2 10 127075284 to 127093169 17885 + protein coding gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
Tssr96120 10 127075329 to 127075398 69 + TSS region transcription start site region 96120
Tssr96121 10 127078886 to 127078918 32 + TSS region transcription start site region 96121
Tssr96122 10 127078922 to 127078946 24 + TSS region transcription start site region 96122
Cpgi2335 10 127078930 to 127080637 1707 CpG island CpG island 2335
Tssr96123 10 127078964 to 127078965 1 + TSS region transcription start site region 96123
Tssr96124 10 127078988 to 127078991 3 + TSS region transcription start site region 96124
Tssr96125 10 127079006 to 127079024 18 + TSS region transcription start site region 96125
Tssr96126 10 127079034 to 127079035 1 + TSS region transcription start site region 96126
Tssr96127 10 127079040 to 127079069 29 + TSS region transcription start site region 96127
Tssr96128 10 127079115 to 127079127 12 + TSS region transcription start site region 96128
Tssr96129 10 127079159 to 127079170 11 + TSS region transcription start site region 96129
Cpgi2336 10 127081174 to 127081762 588 CpG island CpG island 2336
Tssr96130 10 127084581 to 127084586 5 + TSS region transcription start site region 96130
Tssr96131 10 127084656 to 127084673 17 + TSS region transcription start site region 96131
Tssr96132 10 127084726 to 127084746 20 + TSS region transcription start site region 96132
Tssr96133 10 127086896 to 127086906 10 + TSS region transcription start site region 96133
Cpgi2337 10 127090578 to 127092210 1632 CpG island CpG island 2337
Tssr96134 10 127092667 to 127092688 21 + TSS region transcription start site region 96134
Tssr96135 10 127093037 to 127093041 4 + TSS region transcription start site region 96135
Os9 10 127095650 to 127121131 25481 - protein coding gene amplified in osteosarcoma
Gm16491 10 127097704 to 127101167 3463 unclassified gene predicted gene 16491
Gm40799 10 127107362 to 127113573 6211 - lncRNA gene predicted gene, 40799
Cpgi2338 10 127120485 to 127121377 892 CpG island CpG island 2338
Tssr99716 10 127121125 to 127121149 24 - TSS region transcription start site region 99716
Tssr96136 10 127129581 to 127129603 22 + TSS region transcription start site region 96136
Tssr96137 10 127129640 to 127129652 12 + TSS region transcription start site region 96137
Gm4178 10 127132848 to 127133496 648 - pseudogene predicted gene 4178
Tssr99717 10 127136614 to 127136634 20 - TSS region transcription start site region 99717
Tssr99718 10 127136645 to 127136654 9 - TSS region transcription start site region 99718
Gm23664 10 127138529 to 127138617 88 - snRNA gene predicted gene, 23664
Tssr96138 10 127141170 to 127141182 12 + TSS region transcription start site region 96138
Tssr99719 10 127145456 to 127145459 3 - TSS region transcription start site region 99719
Tssr96139 10 127149372 to 127149380 8 + TSS region transcription start site region 96139
Tssr96140 10 127150706 to 127150715 9 + TSS region transcription start site region 96140
Tssr96141 10 127150740 to 127150746 6 + TSS region transcription start site region 96141
Gm46185 10 127151460 to 127166775 15315 - lncRNA gene predicted gene, 46185
Tssr99720 10 127162922 to 127162948 26 - TSS region transcription start site region 99720
Tssr96142 10 127163389 to 127163417 28 + TSS region transcription start site region 96142
Tssr96143 10 127163538 to 127163548 10 + TSS region transcription start site region 96143
Gm46184 10 127164173 to 127164935 762 - lncRNA gene predicted gene, 46184
Cpgi2339 10 127164768 to 127166653 1885 CpG island CpG island 2339
Tssr96144 10 127164771 to 127164786 15 + TSS region transcription start site region 96144
Tssr96145 10 127165118 to 127165225 107 + TSS region transcription start site region 96145
B4galnt1 10 127165225 to 127172330 7105 + protein coding gene beta-1,4-N-acetyl-galactosaminyl transferase 1
Tssr96146 10 127165252 to 127165263 11 + TSS region transcription start site region 96146
Tssr96147 10 127165292 to 127165303 11 + TSS region transcription start site region 96147
Tssr96148 10 127165313 to 127165327 14 + TSS region transcription start site region 96148
Tssr96149 10 127165340 to 127165363 23 + TSS region transcription start site region 96149
Tssr96150 10 127165365 to 127165398 33 + TSS region transcription start site region 96150
Tssr96151 10 127165399 to 127165402 3 + TSS region transcription start site region 96151
Tssr96152 10 127165413 to 127165424 11 + TSS region transcription start site region 96152
Tssr96153 10 127165502 to 127165503 1 + TSS region transcription start site region 96153
Tssr99721 10 127165516 to 127165530 14 - TSS region transcription start site region 99721
Tssr99722 10 127165679 to 127165692 13 - TSS region transcription start site region 99722
Tssr96154 10 127165787 to 127165804 17 + TSS region transcription start site region 96154
Tssr96155 10 127165805 to 127165822 17 + TSS region transcription start site region 96155
Tssr96156 10 127165825 to 127165900 75 + TSS region transcription start site region 96156
Tssr96157 10 127166024 to 127166043 19 + TSS region transcription start site region 96157
Tssr99723 10 127166256 to 127166272 16 - TSS region transcription start site region 99723
Tssr99724 10 127166316 to 127166340 24 - TSS region transcription start site region 99724
Tssr99725 10 127166343 to 127166358 15 - TSS region transcription start site region 99725
Tssr96158 10 127166485 to 127166503 18 + TSS region transcription start site region 96158
Tssr96159 10 127166688 to 127166700 12 + TSS region transcription start site region 96159
Tssr99726 10 127166983 to 127167003 20 - TSS region transcription start site region 99726
Tssr96160 10 127167358 to 127167376 18 + TSS region transcription start site region 96160
Tssr96161 10 127167484 to 127167506 22 + TSS region transcription start site region 96161
Tssr96162 10 127167669 to 127167684 15 + TSS region transcription start site region 96162
Tssr96163 10 127167771 to 127167785 14 + TSS region transcription start site region 96163
Cpgi2340 10 127170002 to 127171344 1342 CpG island CpG island 2340
Tssr96164 10 127170945 to 127170948 3 + TSS region transcription start site region 96164
Tssr96165 10 127172032 to 127172046 14 + TSS region transcription start site region 96165
Slc26a10 10 127172313 to 127180726 8413 - protein coding gene solute carrier family 26, member 10
Tssr99727 10 127177000 to 127177030 30 - TSS region transcription start site region 99727
Cpgi2341 10 127177665 to 127179063 1398 CpG island CpG island 2341
Tssr99728 10 127179095 to 127179097 2 - TSS region transcription start site region 99728
Cpgi2342 10 127180152 to 127180559 407 CpG island CpG island 2342
Tssr99729 10 127180579 to 127180583 4 - TSS region transcription start site region 99729
Tssr96166 10 127181808 to 127181837 29 + TSS region transcription start site region 96166
Tssr96167 10 127181844 to 127181855 11 + TSS region transcription start site region 96167
Tssr96168 10 127181912 to 127181922 10 + TSS region transcription start site region 96168
Arhgef25 10 127182525 to 127190083 7558 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 25
Tssr96169 10 127187778 to 127187790 12 + TSS region transcription start site region 96169
Cpgi2343 10 127188207 to 127189624 1417 CpG island CpG island 2343
Tssr99730 10 127188731 to 127188763 32 - TSS region transcription start site region 99730
Tssr99731 10 127188776 to 127188806 30 - TSS region transcription start site region 99731
Tssr99732 10 127188828 to 127188837 9 - TSS region transcription start site region 99732
Cpgi2344 10 127189837 to 127190160 323 CpG island CpG island 2344
Tssr99733 10 127189981 to 127190071 90 - TSS region transcription start site region 99733
Dtx3 10 127190378 to 127195728 5350 - protein coding gene deltex 3, E3 ubiquitin ligase
Tssr99734 10 127191544 to 127191556 12 - TSS region transcription start site region 99734
Tssr99735 10 127193133 to 127193160 27 - TSS region transcription start site region 99735
Cpgi2345 10 127195131 to 127195767 636 CpG island CpG island 2345
Tssr99736 10 127195198 to 127195222 24 - TSS region transcription start site region 99736
Tssr96170 10 127195240 to 127195298 58 + TSS region transcription start site region 96170
F420014N23Rik 10 127195249 to 127202643 7394 + lincRNA gene RIKEN cDNA F420014N23 gene
Tssr99737 10 127195713 to 127195739 26 - TSS region transcription start site region 99737
Pip4k2c 10 127197067 to 127211585 14518 - protein coding gene phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
Cpgi2346 10 127210982 to 127211886 904 CpG island CpG island 2346
Tssr99738 10 127211528 to 127211626 98 - TSS region transcription start site region 99738
Kif5a 10 127225696 to 127263348 37652 - protein coding gene kinesin family member 5A
Tssr99739 10 127230684 to 127230690 6 - TSS region transcription start site region 99739
Tssr99740 10 127230738 to 127230771 33 - TSS region transcription start site region 99740
Tssr96171 10 127242707 to 127242741 34 + TSS region transcription start site region 96171
Tssr99741 10 127242798 to 127242809 11 - TSS region transcription start site region 99741
Tssr99742 10 127243440 to 127243452 12 - TSS region transcription start site region 99742
Tssr99743 10 127243710 to 127243756 46 - TSS region transcription start site region 99743
Tssr99744 10 127247619 to 127247630 11 - TSS region transcription start site region 99744
Cpgi2347 10 127262551 to 127263429 878 CpG island CpG island 2347
Tssr99745 10 127263043 to 127263050 7 - TSS region transcription start site region 99745
Tssr99746 10 127263063 to 127263101 38 - TSS region transcription start site region 99746
Tssr99747 10 127263102 to 127263133 31 - TSS region transcription start site region 99747
Tssr99748 10 127263147 to 127263156 9 - TSS region transcription start site region 99748
Tssr99749 10 127263315 to 127263345 30 - TSS region transcription start site region 99749
Tssr99750 10 127263346 to 127263368 22 - TSS region transcription start site region 99750
Gm40800 10 127264304 to 127265744 1440 + lncRNA gene predicted gene, 40800
Cpgi2348 10 127266136 to 127267032 896 CpG island CpG island 2348
Tssr96172 10 127266256 to 127266292 36 + TSS region transcription start site region 96172
Tssr96173 10 127266297 to 127266306 9 + TSS region transcription start site region 96173
Tssr96174 10 127266324 to 127266442 118 + TSS region transcription start site region 96174
Dctn2 10 127266368 to 127281950 15582 + protein coding gene dynactin 2
Tssr99751 10 127267026 to 127267046 20 - TSS region transcription start site region 99751
Tssr96175 10 127274984 to 127274994 10 + TSS region transcription start site region 96175
Mbd6 10 127281956 to 127289018 7062 - protein coding gene methyl-CpG binding domain protein 6
Tssr99752 10 127282564 to 127282585 21 - TSS region transcription start site region 99752
Tssr99753 10 127286251 to 127286263 12 - TSS region transcription start site region 99753
Tssr99754 10 127286424 to 127286431 7 - TSS region transcription start site region 99754
Tssr96176 10 127288080 to 127288085 5 + TSS region transcription start site region 96176
Cpgi2349 10 127288297 to 127289583 1286 CpG island CpG island 2349
Tssr99755 10 127288415 to 127288430 15 - TSS region transcription start site region 99755
Tssr99756 10 127288433 to 127288460 27 - TSS region transcription start site region 99756
Tssr96177 10 127288490 to 127288521 31 + TSS region transcription start site region 96177
Gm20492 10 127288514 to 127289681 1167 + lncRNA gene predicted gene 20492
Tssr96178 10 127288528 to 127288551 23 + TSS region transcription start site region 96178
Tssr99757 10 127288610 to 127288633 23 - TSS region transcription start site region 99757
Tssr99758 10 127288759 to 127288774 15 - TSS region transcription start site region 99758
Tssr99759 10 127288819 to 127288846 27 - TSS region transcription start site region 99759
Tssr99760 10 127288851 to 127288918 67 - TSS region transcription start site region 99760
Tssr3392 10 127288910 to 127288951 41 + TSS region transcription start site region 3392
Tssr99761 10 127288965 to 127288997 32 - TSS region transcription start site region 99761
Tssr99762 10 127288999 to 127289035 36 - TSS region transcription start site region 99762
Tssr99763 10 127289056 to 127289067 11 - TSS region transcription start site region 99763
Gm4189 10 127289696 to 127290788 1092 - unclassified non-coding RNA gene predicted gene 4189
Tssr96179 10 127290003 to 127290014 11 + TSS region transcription start site region 96179
Cpgi2350 10 127290325 to 127291223 898 CpG island CpG island 2350
Tssr99764 10 127290338 to 127290360 22 - TSS region transcription start site region 99764
Tssr96180 10 127290786 to 127290803 17 + TSS region transcription start site region 96180
Ddit3 10 127290793 to 127296291 5498 + protein coding gene DNA-damage inducible transcript 3