Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:126568864-127013710

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr3391 10 126573069 to 126573073 4 - TSS region transcription start site region 3391
Gm47965 10 126586690 to 126586804 114 - pseudogene predicted gene, 47965
Gm40797 10 126663998 to 126674452 10454 + lincRNA gene predicted gene, 40797
Tssr99696 10 126692525 to 126692539 14 - TSS region transcription start site region 99696
4930456K20Rik 10 126693433 to 126694536 1103 unclassified gene RIKEN cDNA 4930456K20 gene
Mir378d 10 126710282 to 126710391 109 - miRNA gene microRNA 378d
Gm47966 10 126714005 to 126719394 5389 - lincRNA gene predicted gene, 47966
D10Mit1002 10 126774619 to 126774742 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1002
4930484H19Rik 10 126788864 to 126793710 4846 - lincRNA gene RIKEN cDNA 4930484H19 gene
Gm9111 10 126809592 to 126810300 708 - pseudogene predicted gene 9111
Cpgi2319 10 126809740 to 126810215 475 CpG island CpG island 2319
Gm24179 10 126840375 to 126840501 126 - snoRNA gene predicted gene, 24179
Cpgi2320 10 126863299 to 126863550 251 CpG island CpG island 2320
Atp23 10 126868427 to 126901355 32928 - protein coding gene ATP23 metallopeptidase and ATP synthase assembly factor homolog
Gm6333 10 126893113 to 126893908 795 + pseudogene predicted gene 6333
Cpgi2321 10 126900845 to 126901548 703 CpG island CpG island 2321
Tssr99697 10 126901315 to 126901396 81 - TSS region transcription start site region 99697
Cpgi2322 10 126905764 to 126906101 337 CpG island CpG island 2322
Tssr99698 10 126905944 to 126905963 19 - TSS region transcription start site region 99698
Tssr99699 10 126905964 to 126905980 16 - TSS region transcription start site region 99699
Cpgi2323 10 126928146 to 126928728 582 CpG island CpG island 2323
Tssr96097 10 126928468 to 126928483 15 + TSS region transcription start site region 96097
Gm30456 10 126934208 to 126935199 991 - lncRNA gene predicted gene, 30456
Cpgi2324 10 126957534 to 126958054 520 CpG island CpG island 2324
Gm30539 10 126957676 to 126978799 21123 + lncRNA gene predicted gene, 30539
Gm49335 10 126958023 to 126960997 2974 + lincRNA gene predicted gene, 49335
Gm47972 10 126962323 to 126962750 427 + lincRNA gene predicted gene, 47972
Gm30595 10 126963796 to 126964711 915 + lncRNA gene predicted gene, 30595
2700001H16Rik 10 126971618 to 126972071 453 unclassified gene RIKEN cDNA 2700001H16 gene
Gm40798 10 126974444 to 126977522 3078 - lncRNA gene predicted gene, 40798
Cpgi2325 10 126978291 to 126980337 2046 CpG island CpG island 2325
Tssr99700 10 126978442 to 126978445 3 - TSS region transcription start site region 99700
Tssr99701 10 126978531 to 126978569 38 - TSS region transcription start site region 99701
Tssr96098 10 126978690 to 126978749 59 + TSS region transcription start site region 96098
Ctdsp2 10 126978717 to 126999975 21258 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
Tssr99702 10 126978878 to 126978896 18 - TSS region transcription start site region 99702
Tssr96099 10 126978903 to 126978914 11 + TSS region transcription start site region 96099
Tssr96100 10 126978928 to 126978973 45 + TSS region transcription start site region 96100
Tssr96101 10 126979149 to 126979193 44 + TSS region transcription start site region 96101
Cpgi2326 10 126980670 to 126981058 388 CpG island CpG island 2326
Mir26a-2 10 126995530 to 126995613 83 + miRNA gene microRNA 26a-2
Tssr96102 10 126997397 to 126997416 19 + TSS region transcription start site region 96102
Tssr96103 10 126997511 to 126997524 13 + TSS region transcription start site region 96103
Mir546 10 126998440 to 126998560 120 + miRNA gene microRNA 546
Tssr96104 10 126998937 to 126998952 15 + TSS region transcription start site region 96104
Avil 10 127000709 to 127020994 20285 + protein coding gene advillin
Tssr96105 10 127000732 to 127000747 15 + TSS region transcription start site region 96105
Cpgi2327 10 127009673 to 127010175 502 CpG island CpG island 2327