Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:126448864-127133710

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr3391 10 126573069 to 126573073 4 - TSS region transcription start site region 3391
Gm47965 10 126586690 to 126586804 114 - pseudogene predicted gene, 47965
Gm40797 10 126663998 to 126674452 10454 + lincRNA gene predicted gene, 40797
Tssr99696 10 126692525 to 126692539 14 - TSS region transcription start site region 99696
4930456K20Rik 10 126693433 to 126694536 1103 unclassified gene RIKEN cDNA 4930456K20 gene
Mir378d 10 126710282 to 126710391 109 - miRNA gene microRNA 378d
Gm47966 10 126714005 to 126719394 5389 - lincRNA gene predicted gene, 47966
D10Mit1002 10 126774619 to 126774742 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1002
4930484H19Rik 10 126788864 to 126793710 4846 - lincRNA gene RIKEN cDNA 4930484H19 gene
Gm9111 10 126809592 to 126810300 708 - pseudogene predicted gene 9111
Cpgi2319 10 126809740 to 126810215 475 CpG island CpG island 2319
Gm24179 10 126840375 to 126840501 126 - snoRNA gene predicted gene, 24179
Cpgi2320 10 126863299 to 126863550 251 CpG island CpG island 2320
Atp23 10 126868427 to 126901355 32928 - protein coding gene ATP23 metallopeptidase and ATP synthase assembly factor homolog
Gm6333 10 126893113 to 126893908 795 + pseudogene predicted gene 6333
Cpgi2321 10 126900845 to 126901548 703 CpG island CpG island 2321
Tssr99697 10 126901315 to 126901396 81 - TSS region transcription start site region 99697
Cpgi2322 10 126905764 to 126906101 337 CpG island CpG island 2322
Tssr99698 10 126905944 to 126905963 19 - TSS region transcription start site region 99698
Tssr99699 10 126905964 to 126905980 16 - TSS region transcription start site region 99699
Cpgi2323 10 126928146 to 126928728 582 CpG island CpG island 2323
Tssr96097 10 126928468 to 126928483 15 + TSS region transcription start site region 96097
Gm30456 10 126934208 to 126935199 991 - lncRNA gene predicted gene, 30456
Cpgi2324 10 126957534 to 126958054 520 CpG island CpG island 2324
Gm30539 10 126957676 to 126978799 21123 + lncRNA gene predicted gene, 30539
Gm49335 10 126958023 to 126960997 2974 + lincRNA gene predicted gene, 49335
Gm47972 10 126962323 to 126962750 427 + lincRNA gene predicted gene, 47972
Gm30595 10 126963796 to 126964711 915 + lncRNA gene predicted gene, 30595
2700001H16Rik 10 126971618 to 126972071 453 unclassified gene RIKEN cDNA 2700001H16 gene
Gm40798 10 126974444 to 126977522 3078 - lncRNA gene predicted gene, 40798
Cpgi2325 10 126978291 to 126980337 2046 CpG island CpG island 2325
Tssr99700 10 126978442 to 126978445 3 - TSS region transcription start site region 99700
Tssr99701 10 126978531 to 126978569 38 - TSS region transcription start site region 99701
Tssr96098 10 126978690 to 126978749 59 + TSS region transcription start site region 96098
Ctdsp2 10 126978717 to 126999975 21258 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
Tssr99702 10 126978878 to 126978896 18 - TSS region transcription start site region 99702
Tssr96099 10 126978903 to 126978914 11 + TSS region transcription start site region 96099
Tssr96100 10 126978928 to 126978973 45 + TSS region transcription start site region 96100
Tssr96101 10 126979149 to 126979193 44 + TSS region transcription start site region 96101
Cpgi2326 10 126980670 to 126981058 388 CpG island CpG island 2326
Mir26a-2 10 126995530 to 126995613 83 + miRNA gene microRNA 26a-2
Tssr96102 10 126997397 to 126997416 19 + TSS region transcription start site region 96102
Tssr96103 10 126997511 to 126997524 13 + TSS region transcription start site region 96103
Mir546 10 126998440 to 126998560 120 + miRNA gene microRNA 546
Tssr96104 10 126998937 to 126998952 15 + TSS region transcription start site region 96104
Avil 10 127000709 to 127020994 20285 + protein coding gene advillin
Tssr96105 10 127000732 to 127000747 15 + TSS region transcription start site region 96105
Cpgi2327 10 127009673 to 127010175 502 CpG island CpG island 2327
Cpgi2328 10 127018443 to 127018665 222 CpG island CpG island 2328
Tsfm 10 127022332 to 127030814 8482 - protein coding gene Ts translation elongation factor, mitochondrial
Cpgi2329 10 127030356 to 127031002 646 CpG island CpG island 2329
Tssr99703 10 127030789 to 127030812 23 - TSS region transcription start site region 99703
Tssr99704 10 127030813 to 127030838 25 - TSS region transcription start site region 99704
Eef1akmt3 10 127032806 to 127042026 9220 - protein coding gene EEF1A lysine methyltransferase 3
Cpgi2330 10 127040823 to 127042270 1447 CpG island CpG island 2330
Mettl1 10 127041643 to 127046365 4722 + protein coding gene methyltransferase like 1
Tssr96106 10 127041931 to 127041972 41 + TSS region transcription start site region 96106
Tssr96107 10 127048235 to 127048246 11 + TSS region transcription start site region 96107
Cyp27b1 10 127048250 to 127053006 4756 + protein coding gene cytochrome P450, family 27, subfamily b, polypeptide 1
Cpgi2331 10 127048950 to 127050272 1322 CpG island CpG island 2331
March9 10 127056050 to 127060184 4134 - protein coding gene membrane-associated ring finger (C3HC4) 9
Cpgi2332 10 127059150 to 127060808 1658 CpG island CpG island 2332
Tssr96108 10 127059358 to 127059371 13 + TSS region transcription start site region 96108
Tssr99705 10 127060135 to 127060148 13 - TSS region transcription start site region 99705
Tssr99706 10 127060163 to 127060206 43 - TSS region transcription start site region 99706
Tssr99707 10 127060258 to 127060306 48 - TSS region transcription start site region 99707
Tssr99708 10 127060338 to 127060387 49 - TSS region transcription start site region 99708
Cpgi2333 10 127063241 to 127064393 1152 CpG island CpG island 2333
Tssr96109 10 127063527 to 127063538 11 + TSS region transcription start site region 96109
Cdk4 10 127063535 to 127067288 3753 + protein coding gene cyclin-dependent kinase 4
Tssr96110 10 127063548 to 127063597 49 + TSS region transcription start site region 96110
Tssr96111 10 127063599 to 127063655 56 + TSS region transcription start site region 96111
Tssr96112 10 127063656 to 127063670 14 + TSS region transcription start site region 96112
Tssr96113 10 127064206 to 127064244 38 + TSS region transcription start site region 96113
Tssr96114 10 127064286 to 127064310 24 + TSS region transcription start site region 96114
Tssr96115 10 127066154 to 127066182 28 + TSS region transcription start site region 96115
Tssr96116 10 127067086 to 127067107 21 + TSS region transcription start site region 96116
Tssr96117 10 127067168 to 127067181 13 + TSS region transcription start site region 96117
Tspan31 10 127067290 to 127070261 2971 - protein coding gene tetraspanin 31
Tssr99709 10 127067517 to 127067538 21 - TSS region transcription start site region 99709
Tssr99710 10 127067632 to 127067660 28 - TSS region transcription start site region 99710
Tssr99711 10 127067732 to 127067760 28 - TSS region transcription start site region 99711
Tssr99712 10 127067826 to 127067842 16 - TSS region transcription start site region 99712
Tssr99713 10 127069096 to 127069109 13 - TSS region transcription start site region 99713
Cpgi2334 10 127070118 to 127071073 955 CpG island CpG island 2334
Tssr99714 10 127070232 to 127070249 17 - TSS region transcription start site region 99714
Tssr99715 10 127070254 to 127070302 48 - TSS region transcription start site region 99715
Tssr96118 10 127070374 to 127070421 47 + TSS region transcription start site region 96118
A730063M14Rik 10 127070481 to 127071101 620 + lincRNA gene RIKEN cDNA A730063M14 gene
Tssr96119 10 127075265 to 127075325 60 + TSS region transcription start site region 96119
Agap2 10 127075284 to 127093169 17885 + protein coding gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
Tssr96120 10 127075329 to 127075398 69 + TSS region transcription start site region 96120
Tssr96121 10 127078886 to 127078918 32 + TSS region transcription start site region 96121
Tssr96122 10 127078922 to 127078946 24 + TSS region transcription start site region 96122
Cpgi2335 10 127078930 to 127080637 1707 CpG island CpG island 2335
Tssr96123 10 127078964 to 127078965 1 + TSS region transcription start site region 96123
Tssr96124 10 127078988 to 127078991 3 + TSS region transcription start site region 96124
Tssr96125 10 127079006 to 127079024 18 + TSS region transcription start site region 96125
Tssr96126 10 127079034 to 127079035 1 + TSS region transcription start site region 96126
Tssr96127 10 127079040 to 127079069 29 + TSS region transcription start site region 96127
Tssr96128 10 127079115 to 127079127 12 + TSS region transcription start site region 96128
Tssr96129 10 127079159 to 127079170 11 + TSS region transcription start site region 96129
Cpgi2336 10 127081174 to 127081762 588 CpG island CpG island 2336
Tssr96130 10 127084581 to 127084586 5 + TSS region transcription start site region 96130
Tssr96131 10 127084656 to 127084673 17 + TSS region transcription start site region 96131
Tssr96132 10 127084726 to 127084746 20 + TSS region transcription start site region 96132
Tssr96133 10 127086896 to 127086906 10 + TSS region transcription start site region 96133
Cpgi2337 10 127090578 to 127092210 1632 CpG island CpG island 2337
Tssr96134 10 127092667 to 127092688 21 + TSS region transcription start site region 96134
Tssr96135 10 127093037 to 127093041 4 + TSS region transcription start site region 96135
Os9 10 127095650 to 127121131 25481 - protein coding gene amplified in osteosarcoma
Gm16491 10 127097704 to 127101167 3463 unclassified gene predicted gene 16491
Gm40799 10 127107362 to 127113573 6211 - lncRNA gene predicted gene, 40799
Cpgi2338 10 127120485 to 127121377 892 CpG island CpG island 2338
Tssr99716 10 127121125 to 127121149 24 - TSS region transcription start site region 99716
Tssr96136 10 127129581 to 127129603 22 + TSS region transcription start site region 96136
Tssr96137 10 127129640 to 127129652 12 + TSS region transcription start site region 96137
Gm4178 10 127132848 to 127133496 648 - pseudogene predicted gene 4178