Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:12553290-13183304

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Utrn 10 12382188 to 12869365 487177 - protein coding gene utrophin
Tssr96712 10 12586297 to 12586327 30 - TSS region transcription start site region 96712
Tssr92366 10 12608918 to 12608925 7 + TSS region transcription start site region 92366
Tssr96713 10 12614560 to 12614572 12 - TSS region transcription start site region 96713
Tssr96714 10 12614597 to 12614617 20 - TSS region transcription start site region 96714
Tssr96715 10 12614687 to 12614700 13 - TSS region transcription start site region 96715
Tssr96716 10 12615033 to 12615069 36 - TSS region transcription start site region 96716
Tssr96717 10 12634077 to 12634123 46 - TSS region transcription start site region 96717
Gm23044 10 12793875 to 12793974 99 - snRNA gene predicted gene, 23044
Tssr96718 10 12813540 to 12813590 50 - TSS region transcription start site region 96718
Tssr96719 10 12813601 to 12813612 11 - TSS region transcription start site region 96719
D10Mit246 10 12821978 to 12822176 198 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 246
Tssr96720 10 12822170 to 12822178 8 - TSS region transcription start site region 96720
Tssr96721 10 12826930 to 12826976 46 - TSS region transcription start site region 96721
Tssr96722 10 12827290 to 12827307 17 - TSS region transcription start site region 96722
D10Mit1.1 10 12828191 to 12828302 111 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1.1
Hrtq3 10 12828307 to 84243920 71415613 QTL heart weight QTL 3
Lvrq4 10 12828307 to 84243920 71415613 QTL liver weight QTL 4
D10Mit1 10 12828307 to 12828408 101 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1
W6q6 10 12828307 to 84243920 71415613 QTL weight 6 weeks QTL 6
Kidpq2 10 12828307 to 84243920 71415613 QTL kidney weight percentage QTL 2
Scfpq1 10 12828307 to 84243920 71415613 QTL subcutaneous fat pad percentage QTL 1
Egq7 10 12828307 to 84243920 71415613 QTL early growth QTL 7
W10q5 10 12828307 to 84243920 71415613 QTL weight 10 weeks QTL 5
W3q11 10 12828307 to 84243920 71415613 QTL weight 3 weeks QTL 11
Tssr92367 10 12846012 to 12846014 2 + TSS region transcription start site region 92367
Gm7525 10 12846088 to 12846541 453 + pseudogene predicted gene 7525
Cpgi1300 10 12867514 to 12867729 215 CpG island CpG island 1300
Cpgi1301 10 12868098 to 12869743 1645 CpG island CpG island 1301
Tssr96723 10 12868174 to 12868187 13 - TSS region transcription start site region 96723
Tssr96724 10 12868190 to 12868227 37 - TSS region transcription start site region 96724
Tssr96725 10 12868290 to 12868304 14 - TSS region transcription start site region 96725
Tssr92368 10 12868401 to 12868432 31 + TSS region transcription start site region 92368
Tssr92369 10 12868967 to 12868981 14 + TSS region transcription start site region 92369
Tssr96726 10 12869084 to 12869137 53 - TSS region transcription start site region 96726
Tssr96727 10 12869144 to 12869222 78 - TSS region transcription start site region 96727
Tssr3138 10 12869442 to 12869487 45 - TSS region transcription start site region 3138
Tssr96728 10 12869489 to 12869517 28 - TSS region transcription start site region 96728
Tssr96729 10 12869630 to 12869641 11 - TSS region transcription start site region 96729
Tssr96730 10 12915478 to 12915493 15 - TSS region transcription start site region 96730
B230208H11Rik 10 12916648 to 12923090 6442 - lincRNA gene RIKEN cDNA B230208H11 gene
Cpgi1302 10 12922413 to 12923285 872 CpG island CpG island 1302
n-TLtaa3 10 12922571 to 12922653 82 - tRNA gene nuclear encoded tRNA leucine 3 (anticodon TAA)
Tssr96731 10 12923039 to 12923073 34 - TSS region transcription start site region 96731
Tssr96732 10 12923075 to 12923080 5 - TSS region transcription start site region 96732
Tssr96733 10 12923103 to 12923143 40 - TSS region transcription start site region 96733
Tssr96734 10 12929868 to 12929873 5 - TSS region transcription start site region 96734
Stx11 10 12939983 to 12964498 24515 - protein coding gene syntaxin 11
Cpgi1303 10 12941049 to 12941956 907 CpG island CpG island 1303
Tssr92370 10 12956061 to 12956075 14 + TSS region transcription start site region 92370
Tssr92371 10 12963519 to 12963523 4 + TSS region transcription start site region 92371
Tssr96735 10 12963865 to 12963873 8 - TSS region transcription start site region 96735
Cpgi1304 10 12963936 to 12964850 914 CpG island CpG island 1304
Tssr96736 10 12964211 to 12964245 34 - TSS region transcription start site region 96736
Tssr96737 10 12964252 to 12964278 26 - TSS region transcription start site region 96737
Tssr96738 10 12964441 to 12964472 31 - TSS region transcription start site region 96738
Tssr96739 10 12964488 to 12964515 27 - TSS region transcription start site region 96739
Tssr96740 10 12974682 to 12974709 27 - TSS region transcription start site region 96740
Tssr92372 10 12974805 to 12974819 14 + TSS region transcription start site region 92372
Tssr96741 10 12975595 to 12975604 9 - TSS region transcription start site region 96741
Tssr92373 10 12975703 to 12975714 11 + TSS region transcription start site region 92373
Tssr92374 10 12976229 to 12976251 22 + TSS region transcription start site region 92374
Tssr92375 10 12976318 to 12976327 9 + TSS region transcription start site region 92375
Cpgi1305 10 12995599 to 12995863 264 CpG island CpG island 1305
Bmiq9 10 13000000 to 25000000 12000000 QTL body mass index QTL 9
Cpgi1306 10 13008267 to 13009137 870 CpG island CpG island 1306
Tssr92376 10 13008423 to 13008437 14 + TSS region transcription start site region 92376
Tssr92377 10 13008442 to 13008519 77 + TSS region transcription start site region 92377
Sf3b5 10 13008450 to 13009183 733 + protein coding gene splicing factor 3b, subunit 5
Tssr92378 10 13008534 to 13008547 13 + TSS region transcription start site region 92378
Gm47691 10 13043097 to 13051385 8288 - lincRNA gene predicted gene, 47691
Tssr96742 10 13060385 to 13060400 15 - TSS region transcription start site region 96742
Tssr96743 10 13060425 to 13060432 7 - TSS region transcription start site region 96743
Tssr92379 10 13060529 to 13060538 9 + TSS region transcription start site region 92379
Tssr92380 10 13060699 to 13060723 24 + TSS region transcription start site region 92380
Gm40602 10 13060724 to 13084712 23988 + lncRNA gene predicted gene, 40602
Cpgi1307 10 13060733 to 13061341 608 CpG island CpG island 1307
Cpgi1308 10 13090345 to 13091351 1006 CpG island CpG island 1308
Plagl1 10 13090788 to 13131694 40906 + protein coding gene pleiomorphic adenoma gene-like 1
Tssr92381 10 13090825 to 13090843 18 + TSS region transcription start site region 92381
Hymai 10 13090845 to 13095900 5055 + lncRNA gene hydatidiform mole associated and imprinted transcript
Gm27741 10 13091581 to 13091817 236 - unclassified non-coding RNA gene predicted gene, 27741
Tssr92382 10 13108818 to 13108822 4 + TSS region transcription start site region 92382
Tssr92383 10 13109390 to 13109393 3 + TSS region transcription start site region 92383
2610311E24Rik 10 13115489 to 13116143 654 unclassified non-coding RNA gene RIKEN cDNA 2610311E24 gene
Tssr92384 10 13124951 to 13124965 14 + TSS region transcription start site region 92384
Cpgi1309 10 13127202 to 13127522 320 CpG island CpG island 1309
Tssr92385 10 13129017 to 13129051 34 + TSS region transcription start site region 92385
Tssr92386 10 13129575 to 13129584 9 + TSS region transcription start site region 92386
Tssr92387 10 13129825 to 13129856 31 + TSS region transcription start site region 92387
Tssr92388 10 13130023 to 13130059 36 + TSS region transcription start site region 92388
Tssr92389 10 13130316 to 13130337 21 + TSS region transcription start site region 92389
Tssr92390 10 13130593 to 13130639 46 + TSS region transcription start site region 92390
Zc2hc1b 10 13149644 to 13178038 28394 - protein coding gene zinc finger, C2HC-type containing 1B
Tssr96744 10 13177989 to 13178004 15 - TSS region transcription start site region 96744
Ltv1 10 13178597 to 13193137 14540 - protein coding gene LTV1 ribosome biogenesis factor
Tssr96745 10 13182411 to 13182444 33 - TSS region transcription start site region 96745