Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:123150945-131190948

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1229 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Homaq2 10 110617486 to 125680038 15062552 QTL homeostatic model assessment QTL 2
Insq12 10 110617486 to 125680038 15062552 QTL insulin QTL 12
Recrq11 10 114500000 to 123800000 9300000 QTL recombination rate in male meiosis QTL 11
Aggr1 10 119671003 to 125739363 6068360 QTL aggression 1
Pcholq2 10 120407822 to 125680038 5272216 QTL plasma cholesterol QTL 2
Gluq3 10 120407822 to 125680038 5272216 QTL blood glucose QTL 3
Psds4 10 122205399 to 125047291 2841892 QTL psoriasis-like skin disease severity 4
Frct3a 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3a
Frct3c 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3c
Frct3 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3
Usp15 10 123105006 to 123196995 91989 - protein coding gene ubiquitin specific peptidase 15
Tssr99664 10 123171787 to 123171838 51 - TSS region transcription start site region 99664
Gm47726 10 123178324 to 123178684 360 - pseudogene predicted gene, 47726
Cpgi2311 10 123196276 to 123197607 1331 CpG island CpG island 2311
Tssr99665 10 123196467 to 123196468 1 - TSS region transcription start site region 99665
Gm4129 10 123196695 to 123199418 2723 + bidirectional promoter lncRNA gene predicted gene 4129
Gm27920 10 123196876 to 123196971 95 - miRNA gene predicted gene, 27920
Tssr99666 10 123196916 to 123196961 45 - TSS region transcription start site region 99666
Tssr99667 10 123196972 to 123196975 3 - TSS region transcription start site region 99667
Tssr99668 10 123196976 to 123196987 11 - TSS region transcription start site region 99668
Gm36628 10 123207950 to 123211644 3694 - lncRNA gene predicted gene, 36628
Cpgi2312 10 123257806 to 123258070 264 CpG island CpG island 2312
Tafa2 10 123264002 to 123741204 477202 + protein coding gene TAFA chemokine like family member 2
Tssr3388 10 123264040 to 123264068 28 + TSS region transcription start site region 3388
Tssr96079 10 123264108 to 123264125 17 + TSS region transcription start site region 96079
Cpgi2313 10 123264421 to 123265884 1463 CpG island CpG island 2313
Tssr99669 10 123264684 to 123264712 28 - TSS region transcription start site region 99669
Tssr3389 10 123264975 to 123265001 26 + TSS region transcription start site region 3389
Tssr96080 10 123265031 to 123265053 22 + TSS region transcription start site region 96080
Tssr96081 10 123360180 to 123360192 12 + TSS region transcription start site region 96081
Tssr96082 10 123360766 to 123360805 39 + TSS region transcription start site region 96082
Tssr96083 10 123432565 to 123432570 5 + TSS region transcription start site region 96083
Gm22958 10 123432566 to 123432749 183 + snRNA gene predicted gene, 22958
Tssr96084 10 123434712 to 123434722 10 + TSS region transcription start site region 96084
Gm47801 10 123437500 to 123440600 3100 + unclassified gene predicted gene, 47801
Gm40794 10 123533857 to 123537534 3677 - lncRNA gene predicted gene, 40794
Tssr3390 10 123582560 to 123582563 3 + TSS region transcription start site region 3390
Gm19169 10 123583574 to 123584814 1240 + pseudogene predicted gene, 19169
Tssr96085 10 123634092 to 123634095 3 + TSS region transcription start site region 96085
Gm18510 10 123890803 to 123891898 1095 - pseudogene predicted gene, 18510
Gm47837 10 124218862 to 124219428 566 + pseudogene predicted gene, 47837
D10Mit271 10 124345946 to 124346062 116 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 271
Gm23777 10 124455059 to 124455317 258 + unclassified non-coding RNA gene predicted gene, 23777
4930503E24Rik 10 124469074 to 124524488 55414 + pseudogene RIKEN cDNA 4930503E24 gene
Tssr99670 10 124545254 to 124545274 20 - TSS region transcription start site region 99670
Gm47839 10 124821112 to 124845481 24369 - lincRNA gene predicted gene, 47839
Gm47840 10 124855213 to 124857492 2279 - unclassified gene predicted gene, 47840
D10Ertd447e 10 124947521 to 124947722 201 DNA segment DNA segment, Chr 10, ERATO Doi 447, expressed
Gm36719 10 124997431 to 125005441 8010 + lincRNA gene predicted gene, 36719
D10Mit297 10 125047170 to 125047291 121 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 297
Gm36771 10 125159460 to 125161239 1779 - lncRNA gene predicted gene, 36771
Gm46205 10 125161340 to 125163692 2352 + lncRNA gene predicted gene, 46205
Slc16a7 10 125219270 to 125389465 170195 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 7
Tssr99671 10 125242164 to 125242169 5 - TSS region transcription start site region 99671
Tssr99672 10 125291592 to 125291623 31 - TSS region transcription start site region 99672
Tssr99673 10 125308792 to 125308801 9 - TSS region transcription start site region 99673
Tssr99674 10 125308805 to 125308806 1 - TSS region transcription start site region 99674
Tssr99675 10 125308809 to 125308825 16 - TSS region transcription start site region 99675
Tssr99676 10 125308843 to 125308853 10 - TSS region transcription start site region 99676
Gm45604 10 125308912 to 125310679 1767 + antisense lncRNA gene predicted gene 45604
Tssr96086 10 125308968 to 125308975 7 + TSS region transcription start site region 96086
Tssr96087 10 125308996 to 125309005 9 + TSS region transcription start site region 96087
Tssr99677 10 125328356 to 125328369 13 - TSS region transcription start site region 99677
Tssr99678 10 125328371 to 125328412 41 - TSS region transcription start site region 99678
Tssr99679 10 125328454 to 125328470 16 - TSS region transcription start site region 99679
Tssr99680 10 125328483 to 125328496 13 - TSS region transcription start site region 99680
Tssr99681 10 125328499 to 125328510 11 - TSS region transcription start site region 99681
Tssr99682 10 125328530 to 125328541 11 - TSS region transcription start site region 99682
Tssr99683 10 125328547 to 125328556 9 - TSS region transcription start site region 99683
Tssr99684 10 125328558 to 125328573 15 - TSS region transcription start site region 99684
Tssr99685 10 125328641 to 125328655 14 - TSS region transcription start site region 99685
Tssr99686 10 125328957 to 125328968 11 - TSS region transcription start site region 99686
D10Mit145 10 125358939 to 125359078 139 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 145
Tssr99687 10 125380444 to 125380453 9 - TSS region transcription start site region 99687
Tssr96088 10 125387951 to 125387976 25 + TSS region transcription start site region 96088
Tssr96089 10 125388535 to 125388556 21 + TSS region transcription start site region 96089
Gm47862 10 125388539 to 125391007 2468 + unclassified gene predicted gene, 47862
Tssr96090 10 125388563 to 125388593 30 + TSS region transcription start site region 96090
Cpgi2314 10 125388601 to 125389894 1293 CpG island CpG island 2314
Tssr99688 10 125388849 to 125388855 6 - TSS region transcription start site region 99688
Tssr99689 10 125389312 to 125389325 13 - TSS region transcription start site region 99689
Tssr99690 10 125389351 to 125389383 32 - TSS region transcription start site region 99690
Tssr99691 10 125389431 to 125389553 122 - TSS region transcription start site region 99691
Tssr99692 10 125389559 to 125389570 11 - TSS region transcription start site region 99692
Tssr99693 10 125389574 to 125389594 20 - TSS region transcription start site region 99693
Tssr99694 10 125390026 to 125390039 13 - TSS region transcription start site region 99694
Tssr99695 10 125488393 to 125488430 37 - TSS region transcription start site region 99695
Gm9102 10 125512530 to 125512991 461 + pseudogene predicted gene 9102
Tssr96091 10 125549375 to 125549382 7 + TSS region transcription start site region 96091
Tssr96092 10 125551542 to 125551544 2 + TSS region transcription start site region 96092
Gm40795 10 125565048 to 125567460 2412 - lncRNA gene predicted gene, 40795
Gluq1 10 125680038 to 74151384 -51528654 QTL blood glucose QTL 1
Pcholq4 10 125680038 to 74151384 -51528654 QTL plasma cholesterol QTL 4
Obrq9 10 125680038 to 125680038 0 QTL obesity resistance QTL 9
Ltgq2 10 125680038 to 125680038 0 QTL liver triglyceride QTL 2
Cpgi2315 10 125731424 to 125731684 260 CpG island CpG island 2315
D10Mit103 10 125739225 to 125739363 138 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 103
Lmr25b 10 125739225 to 125739363 138 QTL leishmaniasis resistance 25b
Ltpr5b 10 125739225 to 125739363 138 QTL Leishmania tropica response 5b
Lmr25 10 125739225 to 125739363 138 QTL leishmaniasis resistance 25
Lmr25a 10 125739225 to 125739363 138 QTL leishmaniasis resistance 25a
Ltpr5 10 125739363 to 90671039 -35068324 QTL Leishmania tropica response 5
Scc9 10 125739363 to 18383585 -107355778 QTL colon tumor susceptibility 9
Gm36884 10 125742504 to 125744819 2315 - lncRNA gene predicted gene, 36884
Gm40796 10 125747004 to 125752851 5847 + lncRNA gene predicted gene, 40796
Gm29862 10 125757040 to 125773965 16925 - lncRNA gene predicted gene, 29862
Opfaq10 10 125797802 to 129630506 3832704 QTL open field activity QTL 10
Gm29944 10 125907398 to 125938614 31216 - lncRNA gene predicted gene, 29944
Cpgi2316 10 125965683 to 125967137 1454 CpG island CpG island 2316
Tssr96093 10 125966189 to 125966207 18 + TSS region transcription start site region 96093
Tssr96094 10 125966214 to 125966272 58 + TSS region transcription start site region 96094
Lrig3 10 125966219 to 126015359 49140 + protein coding gene leucine-rich repeats and immunoglobulin-like domains 3
Tssr96095 10 125972380 to 125972385 5 + TSS region transcription start site region 96095
Gm29997 10 125979853 to 125986204 6351 + lncRNA gene predicted gene, 29997
D10Mit270 10 125986128 to 125986235 107 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 270
Gm22183 10 126036827 to 126036899 72 + miRNA gene predicted gene, 22183
Gm30041 10 126094123 to 126138321 44198 + lncRNA gene predicted gene, 30041
Cpgi2317 10 126168704 to 126168870 166 CpG island CpG island 2317
Gm4510 10 126185897 to 126186323 426 - pseudogene predicted gene 4510
1700021G15Rik 10 126255117 to 126257218 2101 + lincRNA gene RIKEN cDNA 1700021G15 gene
Cpgi2318 10 126330598 to 126330821 223 CpG island CpG island 2318
1700025K04Rik 10 126371838 to 126374329 2491 + lincRNA gene RIKEN cDNA 1700025K04 gene
Tssr96096 10 126371970 to 126371998 28 + TSS region transcription start site region 96096
Tssr3391 10 126573069 to 126573073 4 - TSS region transcription start site region 3391
Gm47965 10 126586690 to 126586804 114 - pseudogene predicted gene, 47965
Gm40797 10 126663998 to 126674452 10454 + lincRNA gene predicted gene, 40797
Tssr99696 10 126692525 to 126692539 14 - TSS region transcription start site region 99696
4930456K20Rik 10 126693433 to 126694536 1103 unclassified gene RIKEN cDNA 4930456K20 gene
Mir378d 10 126710282 to 126710391 109 - miRNA gene microRNA 378d
Gm47966 10 126714005 to 126719394 5389 - lincRNA gene predicted gene, 47966
D10Mit1002 10 126774619 to 126774742 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1002
4930484H19Rik 10 126788864 to 126793710 4846 - lincRNA gene RIKEN cDNA 4930484H19 gene
Gm9111 10 126809592 to 126810300 708 - pseudogene predicted gene 9111
Cpgi2319 10 126809740 to 126810215 475 CpG island CpG island 2319
Gm24179 10 126840375 to 126840501 126 - snoRNA gene predicted gene, 24179
Cpgi2320 10 126863299 to 126863550 251 CpG island CpG island 2320
Atp23 10 126868427 to 126901355 32928 - protein coding gene ATP23 metallopeptidase and ATP synthase assembly factor homolog
Gm6333 10 126893113 to 126893908 795 + pseudogene predicted gene 6333
Cpgi2321 10 126900845 to 126901548 703 CpG island CpG island 2321
Tssr99697 10 126901315 to 126901396 81 - TSS region transcription start site region 99697
Cpgi2322 10 126905764 to 126906101 337 CpG island CpG island 2322
Tssr99698 10 126905944 to 126905963 19 - TSS region transcription start site region 99698
Tssr99699 10 126905964 to 126905980 16 - TSS region transcription start site region 99699
Cpgi2323 10 126928146 to 126928728 582 CpG island CpG island 2323
Tssr96097 10 126928468 to 126928483 15 + TSS region transcription start site region 96097
Gm30456 10 126934208 to 126935199 991 - lncRNA gene predicted gene, 30456
Cpgi2324 10 126957534 to 126958054 520 CpG island CpG island 2324
Gm30539 10 126957676 to 126978799 21123 + lncRNA gene predicted gene, 30539
Gm49335 10 126958023 to 126960997 2974 + lincRNA gene predicted gene, 49335
Gm47972 10 126962323 to 126962750 427 + lincRNA gene predicted gene, 47972
Gm30595 10 126963796 to 126964711 915 + lncRNA gene predicted gene, 30595
2700001H16Rik 10 126971618 to 126972071 453 unclassified gene RIKEN cDNA 2700001H16 gene
Gm40798 10 126974444 to 126977522 3078 - lncRNA gene predicted gene, 40798
Cpgi2325 10 126978291 to 126980337 2046 CpG island CpG island 2325
Tssr99700 10 126978442 to 126978445 3 - TSS region transcription start site region 99700
Tssr99701 10 126978531 to 126978569 38 - TSS region transcription start site region 99701
Tssr96098 10 126978690 to 126978749 59 + TSS region transcription start site region 96098
Ctdsp2 10 126978717 to 126999975 21258 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
Tssr99702 10 126978878 to 126978896 18 - TSS region transcription start site region 99702
Tssr96099 10 126978903 to 126978914 11 + TSS region transcription start site region 96099
Tssr96100 10 126978928 to 126978973 45 + TSS region transcription start site region 96100
Tssr96101 10 126979149 to 126979193 44 + TSS region transcription start site region 96101
Cpgi2326 10 126980670 to 126981058 388 CpG island CpG island 2326
Mir26a-2 10 126995530 to 126995613 83 + miRNA gene microRNA 26a-2
Tssr96102 10 126997397 to 126997416 19 + TSS region transcription start site region 96102
Tssr96103 10 126997511 to 126997524 13 + TSS region transcription start site region 96103
Mir546 10 126998440 to 126998560 120 + miRNA gene microRNA 546
Tssr96104 10 126998937 to 126998952 15 + TSS region transcription start site region 96104
Avil 10 127000709 to 127020994 20285 + protein coding gene advillin
Tssr96105 10 127000732 to 127000747 15 + TSS region transcription start site region 96105
Cpgi2327 10 127009673 to 127010175 502 CpG island CpG island 2327
Cpgi2328 10 127018443 to 127018665 222 CpG island CpG island 2328
Tsfm 10 127022332 to 127030814 8482 - protein coding gene Ts translation elongation factor, mitochondrial
Cpgi2329 10 127030356 to 127031002 646 CpG island CpG island 2329
Tssr99703 10 127030789 to 127030812 23 - TSS region transcription start site region 99703
Tssr99704 10 127030813 to 127030838 25 - TSS region transcription start site region 99704
Eef1akmt3 10 127032806 to 127042026 9220 - protein coding gene EEF1A lysine methyltransferase 3
Cpgi2330 10 127040823 to 127042270 1447 CpG island CpG island 2330
Mettl1 10 127041643 to 127046365 4722 + protein coding gene methyltransferase like 1
Tssr96106 10 127041931 to 127041972 41 + TSS region transcription start site region 96106
Tssr96107 10 127048235 to 127048246 11 + TSS region transcription start site region 96107
Cyp27b1 10 127048250 to 127053006 4756 + protein coding gene cytochrome P450, family 27, subfamily b, polypeptide 1
Cpgi2331 10 127048950 to 127050272 1322 CpG island CpG island 2331
March9 10 127056050 to 127060184 4134 - protein coding gene membrane-associated ring finger (C3HC4) 9
Cpgi2332 10 127059150 to 127060808 1658 CpG island CpG island 2332
Tssr96108 10 127059358 to 127059371 13 + TSS region transcription start site region 96108
Tssr99705 10 127060135 to 127060148 13 - TSS region transcription start site region 99705
Tssr99706 10 127060163 to 127060206 43 - TSS region transcription start site region 99706
Tssr99707 10 127060258 to 127060306 48 - TSS region transcription start site region 99707
Tssr99708 10 127060338 to 127060387 49 - TSS region transcription start site region 99708
Cpgi2333 10 127063241 to 127064393 1152 CpG island CpG island 2333
Tssr96109 10 127063527 to 127063538 11 + TSS region transcription start site region 96109
Cdk4 10 127063535 to 127067288 3753 + protein coding gene cyclin-dependent kinase 4
Tssr96110 10 127063548 to 127063597 49 + TSS region transcription start site region 96110
Tssr96111 10 127063599 to 127063655 56 + TSS region transcription start site region 96111
Tssr96112 10 127063656 to 127063670 14 + TSS region transcription start site region 96112
Tssr96113 10 127064206 to 127064244 38 + TSS region transcription start site region 96113
Tssr96114 10 127064286 to 127064310 24 + TSS region transcription start site region 96114
Tssr96115 10 127066154 to 127066182 28 + TSS region transcription start site region 96115
Tssr96116 10 127067086 to 127067107 21 + TSS region transcription start site region 96116