Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:122233655-123123664

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr5 10 116384730 to 122343923 5959193 QTL leishmaniasis resistance 5
Tssr3385 10 122270979 to 122270981 2 + TSS region transcription start site region 3385
Lmr5b 10 122343808 to 122343923 115 QTL leishmaniasis resistance 5b
Lmr5d 10 122343808 to 122343923 115 QTL leishmaniasis resistance 5d
Lmr5f 10 122343808 to 122343923 115 QTL leishmaniasis resistance 5f
D10Mit25 10 122343808 to 122343923 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 25
Gm40790 10 122357334 to 122380088 22754 - lncRNA gene predicted gene, 40790
Gm36041 10 122386892 to 122435033 48141 + lincRNA gene predicted gene, 36041
Tssr96049 10 122387003 to 122387016 13 + TSS region transcription start site region 96049
Gm48877 10 122405113 to 122546498 141385 - antisense lncRNA gene predicted gene, 48877
Tssr96050 10 122406389 to 122406390 1 + TSS region transcription start site region 96050
Cpgi2301 10 122448207 to 122449781 1574 CpG island CpG island 2301
Avpr1a 10 122448499 to 122453452 4953 + protein coding gene arginine vasopressin receptor 1A
Tssr96051 10 122448531 to 122448550 19 + TSS region transcription start site region 96051
Tssr96052 10 122448551 to 122448575 24 + TSS region transcription start site region 96052
Tssr96053 10 122449386 to 122449395 9 + TSS region transcription start site region 96053
Gm48878 10 122454132 to 122456809 2677 + unclassified gene predicted gene, 48878
D10Mit238 10 122479287 to 122479400 113 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 238
Gm40791 10 122541185 to 122543405 2220 + lncRNA gene predicted gene, 40791
A130077B15Rik 10 122565023 to 122569891 4868 - lincRNA gene RIKEN cDNA A130077B15 gene
Tssr99652 10 122569874 to 122569908 34 - TSS region transcription start site region 99652
Gm36284 10 122583975 to 122678741 94766 - lncRNA gene predicted gene, 36284
Tssr96054 10 122615883 to 122615909 26 + TSS region transcription start site region 96054
Gm40793 10 122624520 to 122630095 5575 + lncRNA gene predicted gene, 40793
Tssr96055 10 122626850 to 122626855 5 + TSS region transcription start site region 96055
Mir6412 10 122648339 to 122648435 96 + miRNA gene microRNA 6412
A430106A03Rik 10 122660720 to 122661593 873 unclassified gene RIKEN cDNA A430106A03 gene
Cpgi2302 10 122678334 to 122679994 1660 CpG island CpG island 2302
Tssr96056 10 122678632 to 122678641 9 + TSS region transcription start site region 96056
Tssr96057 10 122678655 to 122678664 9 + TSS region transcription start site region 96057
Tssr96058 10 122678726 to 122678755 29 + TSS region transcription start site region 96058
Ppm1h 10 122678762 to 122945795 267033 + protein coding gene protein phosphatase 1H (PP2C domain containing)
Tssr96059 10 122678764 to 122678811 47 + TSS region transcription start site region 96059
Tssr3386 10 122678964 to 122678994 30 - TSS region transcription start site region 3386
Tssr96060 10 122678980 to 122678991 11 + TSS region transcription start site region 96060
Tssr96061 10 122679011 to 122679022 11 + TSS region transcription start site region 96061
Tssr96062 10 122679041 to 122679052 11 + TSS region transcription start site region 96062
Tssr96063 10 122679241 to 122679244 3 + TSS region transcription start site region 96063
Mir8104 10 122679315 to 122679415 100 + miRNA gene microRNA 8104
Tssr99653 10 122679413 to 122679443 30 - TSS region transcription start site region 99653
Tssr96064 10 122680096 to 122680100 4 + TSS region transcription start site region 96064
Cpgi2303 10 122680501 to 122680660 159 CpG island CpG island 2303
Tssr96065 10 122681162 to 122681169 7 + TSS region transcription start site region 96065
Cpgi2304 10 122693490 to 122694149 659 CpG island CpG island 2304
Tssr96066 10 122725357 to 122725360 3 + TSS region transcription start site region 96066
A430028G04Rik 10 122756438 to 122758410 1972 - unclassified gene RIKEN cDNA A430028G04 gene
Tssr96067 10 122757132 to 122757181 49 + TSS region transcription start site region 96067
Gm47582 10 122777480 to 122778065 585 - unclassified gene predicted gene, 47582
Tssr96068 10 122782697 to 122782713 16 + TSS region transcription start site region 96068
Gm36208 10 122792055 to 122792483 428 - antisense lncRNA gene predicted gene, 36208
Tssr96069 10 122795164 to 122795167 3 + TSS region transcription start site region 96069
Cpgi2305 10 122800391 to 122800584 193 CpG island CpG island 2305
Cpgi2306 10 122802139 to 122802618 479 CpG island CpG island 2306
Tssr96070 10 122802200 to 122802221 21 + TSS region transcription start site region 96070
Tssr96071 10 122805550 to 122805552 2 + TSS region transcription start site region 96071
Tssr3387 10 122805894 to 122805940 46 + TSS region transcription start site region 3387
Tssr96072 10 122806075 to 122806079 4 + TSS region transcription start site region 96072
Tssr96073 10 122817970 to 122817987 17 + TSS region transcription start site region 96073
Tssr96074 10 122821175 to 122821179 4 + TSS region transcription start site region 96074
Tssr99654 10 122857397 to 122857442 45 - TSS region transcription start site region 99654
Tssr96075 10 122860367 to 122860408 41 + TSS region transcription start site region 96075
Tssr96076 10 122941975 to 122941979 4 + TSS region transcription start site region 96076
Tssr96077 10 122944723 to 122944727 4 + TSS region transcription start site region 96077
Frct3 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3
Frct3a 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3a
Frct3c 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3c
Cpgi2307 10 122960100 to 122960433 333 CpG island CpG island 2307
Cpgi2308 10 122960882 to 122961051 169 CpG island CpG island 2308
Tssr99655 10 122982343 to 122982346 3 - TSS region transcription start site region 99655
D630033A02Rik 10 122985074 to 122986555 1481 - unclassified gene RIKEN cDNA D630033A02 gene
Cpgi2309 10 122985239 to 122986757 1518 CpG island CpG island 2309
Tssr99656 10 122985636 to 122985642 6 - TSS region transcription start site region 99656
Mirlet7i 10 122985640 to 122985724 84 - miRNA gene microRNA let7i
Tssr99657 10 122986050 to 122986064 14 - TSS region transcription start site region 99657
Tssr99658 10 122986469 to 122986498 29 - TSS region transcription start site region 99658
Tssr96078 10 122986574 to 122986588 14 + TSS region transcription start site region 96078
Mon2 10 122992060 to 123076505 84445 - protein coding gene MON2 homolog, regulator of endosome to Golgi trafficking
D10Mit277 10 123015843 to 123015992 149 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-277
Cpgi2310 10 123075774 to 123076689 915 CpG island CpG island 2310
Tssr99659 10 123076367 to 123076391 24 - TSS region transcription start site region 99659
Usp15 10 123105006 to 123196995 91989 - protein coding gene ubiquitin specific peptidase 15