Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:121942334-122795088

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr5 10 116384730 to 122343923 5959193 QTL leishmaniasis resistance 5
Hwtf2 10 120000000 to 122000000 2000000 QTL heart weight by femur 2
Srgap1 10 121780991 to 122047315 266324 - protein coding gene SLIT-ROBO Rho GTPase activating protein 1
4930402N20Rik 10 121952715 to 121953533 818 unclassified gene RIKEN cDNA 4930402N20 gene
Tssr99644 10 121988060 to 121988061 1 - TSS region transcription start site region 99644
D10Mit268 10 122021768 to 122021889 121 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 268
2610011I18Rik 10 122031360 to 122032847 1487 unclassified gene RIKEN cDNA 2610011I18 gene
Cpgi2299 10 122046743 to 122048259 1516 CpG island CpG island 2299
Tssr99645 10 122047265 to 122047289 24 - TSS region transcription start site region 99645
Tssr99646 10 122047293 to 122047322 29 - TSS region transcription start site region 99646
Tssr99647 10 122047467 to 122047503 36 - TSS region transcription start site region 99647
Tssr99648 10 122047765 to 122047852 87 - TSS region transcription start site region 99648
Gm48826 10 122066343 to 122067021 678 + pseudogene predicted gene, 48826
Gm48827 10 122069136 to 122069451 315 - pseudogene predicted gene, 48827
Gm48828 10 122074788 to 122074998 210 + pseudogene predicted gene, 48828
Gm9079 10 122078112 to 122079879 1767 - pseudogene predicted gene 9079
Rxylt1 10 122081120 to 122097366 16246 - protein coding gene ribitol xylosyltransferase 1
Tssr99649 10 122096465 to 122096468 3 - TSS region transcription start site region 99649
Cpgi2300 10 122096519 to 122097866 1347 CpG island CpG island 2300
Tssr99650 10 122097042 to 122097073 31 - TSS region transcription start site region 99650
Tssr99651 10 122097078 to 122097196 118 - TSS region transcription start site region 99651
Gm4489 10 122119700 to 122130558 10858 + lincRNA gene predicted gene 4489
Gm9081 10 122169373 to 122170363 990 + pseudogene predicted gene 9081
Tssr96048 10 122198769 to 122198774 5 + TSS region transcription start site region 96048
Gm48875 10 122199150 to 122199498 348 + pseudogene predicted gene, 48875
D10Mit35a 10 122205399 to 122205623 224 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 35a
Psds4 10 122205399 to 125047291 2841892 QTL psoriasis-like skin disease severity 4
Nhdlq4 10 122205399 to 122205623 224 QTL non-HDL QTL 4
Nociq2 10 122205399 to 122205623 224 QTL nociceptive sensitivity inflammatory QTL 2
Sle12 10 122205399 to 122205623 224 QTL systematic lupus erythematosus susceptibility 12
W6q8 10 122205623 to 84243786 -37961837 QTL weight 6 weeks QTL 8
Lgaq5 10 122205623 to 84243786 -37961837 QTL late growth adjusted QTL 5
W10q8 10 122205623 to 84243786 -37961837 QTL weight 10 weeks QTL 8
Tesq3 10 122205623 to 84243786 -37961837 QTL testis weight QTL 3
Egq9 10 122205623 to 84243786 -37961837 QTL early growth QTL 9
Espq3 10 122205623 to 84243786 -37961837 QTL embryo survival preimplantation QTL 3
Estoq3 10 122205623 to 84243786 -37961837 QTL embryo survival total QTL 3
D10Mit35b 10 122217086 to 122217366 280 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 35b
Tssr3385 10 122270979 to 122270981 2 + TSS region transcription start site region 3385
D10Mit25 10 122343808 to 122343923 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 25
Lmr5f 10 122343808 to 122343923 115 QTL leishmaniasis resistance 5f
Lmr5d 10 122343808 to 122343923 115 QTL leishmaniasis resistance 5d
Lmr5b 10 122343808 to 122343923 115 QTL leishmaniasis resistance 5b
Gm40790 10 122357334 to 122380088 22754 - lncRNA gene predicted gene, 40790
Gm36041 10 122386892 to 122435033 48141 + lincRNA gene predicted gene, 36041
Tssr96049 10 122387003 to 122387016 13 + TSS region transcription start site region 96049
Gm48877 10 122405113 to 122546498 141385 - antisense lncRNA gene predicted gene, 48877
Tssr96050 10 122406389 to 122406390 1 + TSS region transcription start site region 96050
Cpgi2301 10 122448207 to 122449781 1574 CpG island CpG island 2301
Avpr1a 10 122448499 to 122453452 4953 + protein coding gene arginine vasopressin receptor 1A
Tssr96051 10 122448531 to 122448550 19 + TSS region transcription start site region 96051
Tssr96052 10 122448551 to 122448575 24 + TSS region transcription start site region 96052
Tssr96053 10 122449386 to 122449395 9 + TSS region transcription start site region 96053
Gm48878 10 122454132 to 122456809 2677 + unclassified gene predicted gene, 48878
D10Mit238 10 122479287 to 122479400 113 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 238
Gm40791 10 122541185 to 122543405 2220 + lncRNA gene predicted gene, 40791
A130077B15Rik 10 122565023 to 122569891 4868 - lincRNA gene RIKEN cDNA A130077B15 gene
Tssr99652 10 122569874 to 122569908 34 - TSS region transcription start site region 99652
Gm36284 10 122583975 to 122678741 94766 - lncRNA gene predicted gene, 36284
Tssr96054 10 122615883 to 122615909 26 + TSS region transcription start site region 96054
Gm40793 10 122624520 to 122630095 5575 + lncRNA gene predicted gene, 40793
Tssr96055 10 122626850 to 122626855 5 + TSS region transcription start site region 96055
Mir6412 10 122648339 to 122648435 96 + miRNA gene microRNA 6412
A430106A03Rik 10 122660720 to 122661593 873 unclassified gene RIKEN cDNA A430106A03 gene
Cpgi2302 10 122678334 to 122679994 1660 CpG island CpG island 2302
Tssr96056 10 122678632 to 122678641 9 + TSS region transcription start site region 96056
Tssr96057 10 122678655 to 122678664 9 + TSS region transcription start site region 96057
Tssr96058 10 122678726 to 122678755 29 + TSS region transcription start site region 96058
Ppm1h 10 122678762 to 122945795 267033 + protein coding gene protein phosphatase 1H (PP2C domain containing)
Tssr96059 10 122678764 to 122678811 47 + TSS region transcription start site region 96059
Tssr3386 10 122678964 to 122678994 30 - TSS region transcription start site region 3386
Tssr96060 10 122678980 to 122678991 11 + TSS region transcription start site region 96060
Tssr96061 10 122679011 to 122679022 11 + TSS region transcription start site region 96061
Tssr96062 10 122679041 to 122679052 11 + TSS region transcription start site region 96062
Tssr96063 10 122679241 to 122679244 3 + TSS region transcription start site region 96063
Mir8104 10 122679315 to 122679415 100 + miRNA gene microRNA 8104
Tssr99653 10 122679413 to 122679443 30 - TSS region transcription start site region 99653
Tssr96064 10 122680096 to 122680100 4 + TSS region transcription start site region 96064
Cpgi2303 10 122680501 to 122680660 159 CpG island CpG island 2303
Tssr96065 10 122681162 to 122681169 7 + TSS region transcription start site region 96065
Cpgi2304 10 122693490 to 122694149 659 CpG island CpG island 2304
Tssr96066 10 122725357 to 122725360 3 + TSS region transcription start site region 96066
A430028G04Rik 10 122756438 to 122758410 1972 - unclassified gene RIKEN cDNA A430028G04 gene
Tssr96067 10 122757132 to 122757181 49 + TSS region transcription start site region 96067
Gm47582 10 122777480 to 122778065 585 - unclassified gene predicted gene, 47582
Tssr96068 10 122782697 to 122782713 16 + TSS region transcription start site region 96068
Gm36208 10 122792055 to 122792483 428 - antisense lncRNA gene predicted gene, 36208