Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:121398339-123898435

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230 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Recrq11 10 114500000 to 123800000 9300000 QTL recombination rate in male meiosis QTL 11
Lmr5 10 116384730 to 122343923 5959193 QTL leishmaniasis resistance 5
Hwtf2 10 120000000 to 122000000 2000000 QTL heart weight by femur 2
Gm18730 10 121400713 to 121401291 578 + pseudogene predicted gene, 18730
Rassf3 10 121410350 to 121476250 65900 - protein coding gene Ras association (RalGDS/AF-6) domain family member 3
Tssr99608 10 121410850 to 121410867 17 - TSS region transcription start site region 99608
Gm48591 10 121423664 to 121462694 39030 - sense intronic lncRNA gene predicted gene, 48591
Tssr99609 10 121426570 to 121426571 1 - TSS region transcription start site region 99609
Tssr99610 10 121435738 to 121435774 36 - TSS region transcription start site region 99610
Tssr99611 10 121439051 to 121439056 5 - TSS region transcription start site region 99611
Cpgi2285 10 121461495 to 121461767 272 CpG island CpG island 2285
Tssr99612 10 121472775 to 121472779 4 - TSS region transcription start site region 99612
Tssr99613 10 121474082 to 121474095 13 - TSS region transcription start site region 99613
Tssr96036 10 121474235 to 121474247 12 + TSS region transcription start site region 96036
Cpgi2286 10 121475286 to 121476866 1580 CpG island CpG island 2286
Tssr99614 10 121475805 to 121475820 15 - TSS region transcription start site region 99614
Tssr99615 10 121476235 to 121476246 11 - TSS region transcription start site region 99615
Tssr99616 10 121476248 to 121476275 27 - TSS region transcription start site region 99616
Tssr99617 10 121476279 to 121476294 15 - TSS region transcription start site region 99617
Tssr99618 10 121476307 to 121476327 20 - TSS region transcription start site region 99618
Tssr96037 10 121488850 to 121488861 11 + TSS region transcription start site region 96037
Tssr96038 10 121488869 to 121488879 10 + TSS region transcription start site region 96038
Tssr96039 10 121488978 to 121488997 19 + TSS region transcription start site region 96039
Gm40787 10 121488986 to 121490147 1161 + lincRNA gene predicted gene, 40787
Tssr99619 10 121494029 to 121494055 26 - TSS region transcription start site region 99619
Tssr96040 10 121494433 to 121494434 1 + TSS region transcription start site region 96040
Tssr96041 10 121496976 to 121496995 19 + TSS region transcription start site region 96041
Tssr99620 10 121498141 to 121498150 9 - TSS region transcription start site region 99620
Gm46204 10 121505351 to 121505976 625 + lincRNA gene predicted gene, 46204
Gm35696 10 121509947 to 121526473 16526 + lincRNA gene predicted gene, 35696
Tssr96042 10 121510330 to 121510345 15 + TSS region transcription start site region 96042
Cpgi2287 10 121516169 to 121516439 270 CpG island CpG island 2287
Cpgi2288 10 121533296 to 121533696 400 CpG island CpG island 2288
Tbk1 10 121546455 to 121586787 40332 - protein coding gene TANK-binding kinase 1
Tssr99621 10 121553941 to 121553963 22 - TSS region transcription start site region 99621
Tssr99622 10 121555655 to 121555659 4 - TSS region transcription start site region 99622
Tssr99623 10 121585873 to 121585883 10 - TSS region transcription start site region 99623
Tssr99624 10 121585901 to 121585910 9 - TSS region transcription start site region 99624
Tssr99625 10 121585922 to 121585970 48 - TSS region transcription start site region 99625
Tssr96043 10 121586217 to 121586242 25 + TSS region transcription start site region 96043
Cpgi2289 10 121586247 to 121587320 1073 CpG island CpG island 2289
Tssr96044 10 121586253 to 121586263 10 + TSS region transcription start site region 96044
Tssr99626 10 121586710 to 121586721 11 - TSS region transcription start site region 99626
Tssr99627 10 121586730 to 121586803 73 - TSS region transcription start site region 99627
Tssr99628 10 121586813 to 121586824 11 - TSS region transcription start site region 99628
Tssr99629 10 121586841 to 121586852 11 - TSS region transcription start site region 99629
Tssr99630 10 121586869 to 121586880 11 - TSS region transcription start site region 99630
Xpot 10 121587380 to 121626332 38952 - protein coding gene exportin, tRNA (nuclear export receptor for tRNAs)
Gm35816 10 121598585 to 121599580 995 - lncRNA gene predicted gene, 35816
Tssr99631 10 121603353 to 121603358 5 - TSS region transcription start site region 99631
Tssr99632 10 121603562 to 121603586 24 - TSS region transcription start site region 99632
Gm24330 10 121618468 to 121618543 75 - miRNA gene predicted gene, 24330
Cpgi2290 10 121625744 to 121626864 1120 CpG island CpG island 2290
Tssr99633 10 121626167 to 121626178 11 - TSS region transcription start site region 99633
Tssr99634 10 121626290 to 121626310 20 - TSS region transcription start site region 99634
Tssr99635 10 121626318 to 121626334 16 - TSS region transcription start site region 99635
Tssr99636 10 121626347 to 121626380 33 - TSS region transcription start site region 99636
Tssr99637 10 121626391 to 121626418 27 - TSS region transcription start site region 99637
Tssr99638 10 121626452 to 121626513 61 - TSS region transcription start site region 99638
Tssr96045 10 121626596 to 121626652 56 + TSS region transcription start site region 96045
Tssr96046 10 121626654 to 121626661 7 + TSS region transcription start site region 96046
Tssr99639 10 121628763 to 121628776 13 - TSS region transcription start site region 99639
Cpgi2291 10 121641317 to 121642575 1258 CpG island CpG island 2291
D930020B18Rik 10 121641588 to 121693915 52327 + protein coding gene RIKEN cDNA D930020B18 gene
Cpgi2292 10 121693042 to 121693248 206 CpG island CpG island 2292
Gm35865 10 121703663 to 121705035 1372 - lincRNA gene predicted gene, 35865
Cpgi2293 10 121719318 to 121719514 196 CpG island CpG island 2293
Cpgi2294 10 121721554 to 121721712 158 CpG island CpG island 2294
Cpgi2295 10 121739403 to 121740532 1129 CpG island CpG island 2295
Tssr96047 10 121739915 to 121739965 50 + TSS region transcription start site region 96047
BC048403 10 121739937 to 121752878 12941 + protein coding gene cDNA sequence BC048403
Tssr99640 10 121740311 to 121740324 13 - TSS region transcription start site region 99640
Cpgi2296 10 121750360 to 121750680 320 CpG island CpG island 2296
Tssr3384 10 121750446 to 121750457 11 + TSS region transcription start site region 3384
Srgap1 10 121780991 to 122047315 266324 - protein coding gene SLIT-ROBO Rho GTPase activating protein 1
Cpgi2297 10 121781196 to 121781766 570 CpG island CpG island 2297
Gm46183 10 121796214 to 121811475 15261 + lncRNA gene predicted gene, 46183
Tssr99641 10 121800574 to 121800578 4 - TSS region transcription start site region 99641
Tssr99642 10 121807098 to 121807109 11 - TSS region transcription start site region 99642
Tssr99643 10 121826329 to 121826332 3 - TSS region transcription start site region 99643
Gm48804 10 121829018 to 121832058 3040 - unclassified gene predicted gene, 48804
Cpgi2298 10 121899324 to 121899844 520 CpG island CpG island 2298
4930402N20Rik 10 121952715 to 121953533 818 unclassified gene RIKEN cDNA 4930402N20 gene
Tssr99644 10 121988060 to 121988061 1 - TSS region transcription start site region 99644
D10Mit268 10 122021768 to 122021889 121 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 268
2610011I18Rik 10 122031360 to 122032847 1487 unclassified gene RIKEN cDNA 2610011I18 gene
Cpgi2299 10 122046743 to 122048259 1516 CpG island CpG island 2299
Tssr99645 10 122047265 to 122047289 24 - TSS region transcription start site region 99645
Tssr99646 10 122047293 to 122047322 29 - TSS region transcription start site region 99646
Tssr99647 10 122047467 to 122047503 36 - TSS region transcription start site region 99647
Tssr99648 10 122047765 to 122047852 87 - TSS region transcription start site region 99648
Gm48826 10 122066343 to 122067021 678 + pseudogene predicted gene, 48826
Gm48827 10 122069136 to 122069451 315 - pseudogene predicted gene, 48827
Gm48828 10 122074788 to 122074998 210 + pseudogene predicted gene, 48828
Gm9079 10 122078112 to 122079879 1767 - pseudogene predicted gene 9079
Rxylt1 10 122081120 to 122097366 16246 - protein coding gene ribitol xylosyltransferase 1
Tssr99649 10 122096465 to 122096468 3 - TSS region transcription start site region 99649
Cpgi2300 10 122096519 to 122097866 1347 CpG island CpG island 2300
Tssr99650 10 122097042 to 122097073 31 - TSS region transcription start site region 99650
Tssr99651 10 122097078 to 122097196 118 - TSS region transcription start site region 99651
Gm4489 10 122119700 to 122130558 10858 + lincRNA gene predicted gene 4489
Gm9081 10 122169373 to 122170363 990 + pseudogene predicted gene 9081
Tssr96048 10 122198769 to 122198774 5 + TSS region transcription start site region 96048
Gm48875 10 122199150 to 122199498 348 + pseudogene predicted gene, 48875
Psds4 10 122205399 to 125047291 2841892 QTL psoriasis-like skin disease severity 4
Sle12 10 122205399 to 122205623 224 QTL systematic lupus erythematosus susceptibility 12
D10Mit35a 10 122205399 to 122205623 224 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 35a
Nociq2 10 122205399 to 122205623 224 QTL nociceptive sensitivity inflammatory QTL 2
Nhdlq4 10 122205399 to 122205623 224 QTL non-HDL QTL 4
W6q8 10 122205623 to 84243786 -37961837 QTL weight 6 weeks QTL 8
Espq3 10 122205623 to 84243786 -37961837 QTL embryo survival preimplantation QTL 3
Tesq3 10 122205623 to 84243786 -37961837 QTL testis weight QTL 3
Lgaq5 10 122205623 to 84243786 -37961837 QTL late growth adjusted QTL 5
Estoq3 10 122205623 to 84243786 -37961837 QTL embryo survival total QTL 3
W10q8 10 122205623 to 84243786 -37961837 QTL weight 10 weeks QTL 8
Egq9 10 122205623 to 84243786 -37961837 QTL early growth QTL 9
D10Mit35b 10 122217086 to 122217366 280 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 35b
Tssr3385 10 122270979 to 122270981 2 + TSS region transcription start site region 3385
Lmr5f 10 122343808 to 122343923 115 QTL leishmaniasis resistance 5f
Lmr5d 10 122343808 to 122343923 115 QTL leishmaniasis resistance 5d
Lmr5b 10 122343808 to 122343923 115 QTL leishmaniasis resistance 5b
D10Mit25 10 122343808 to 122343923 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 25
Gm40790 10 122357334 to 122380088 22754 - lncRNA gene predicted gene, 40790
Gm36041 10 122386892 to 122435033 48141 + lincRNA gene predicted gene, 36041
Tssr96049 10 122387003 to 122387016 13 + TSS region transcription start site region 96049
Gm48877 10 122405113 to 122546498 141385 - antisense lncRNA gene predicted gene, 48877
Tssr96050 10 122406389 to 122406390 1 + TSS region transcription start site region 96050
Cpgi2301 10 122448207 to 122449781 1574 CpG island CpG island 2301
Avpr1a 10 122448499 to 122453452 4953 + protein coding gene arginine vasopressin receptor 1A
Tssr96051 10 122448531 to 122448550 19 + TSS region transcription start site region 96051
Tssr96052 10 122448551 to 122448575 24 + TSS region transcription start site region 96052
Tssr96053 10 122449386 to 122449395 9 + TSS region transcription start site region 96053
Gm48878 10 122454132 to 122456809 2677 + unclassified gene predicted gene, 48878
D10Mit238 10 122479287 to 122479400 113 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 238
Gm40791 10 122541185 to 122543405 2220 + lncRNA gene predicted gene, 40791
A130077B15Rik 10 122565023 to 122569891 4868 - lincRNA gene RIKEN cDNA A130077B15 gene
Tssr99652 10 122569874 to 122569908 34 - TSS region transcription start site region 99652
Gm36284 10 122583975 to 122678741 94766 - lncRNA gene predicted gene, 36284
Tssr96054 10 122615883 to 122615909 26 + TSS region transcription start site region 96054
Gm40793 10 122624520 to 122630095 5575 + lncRNA gene predicted gene, 40793
Tssr96055 10 122626850 to 122626855 5 + TSS region transcription start site region 96055
Mir6412 10 122648339 to 122648435 96 + miRNA gene microRNA 6412
A430106A03Rik 10 122660720 to 122661593 873 unclassified gene RIKEN cDNA A430106A03 gene
Cpgi2302 10 122678334 to 122679994 1660 CpG island CpG island 2302
Tssr96056 10 122678632 to 122678641 9 + TSS region transcription start site region 96056
Tssr96057 10 122678655 to 122678664 9 + TSS region transcription start site region 96057
Tssr96058 10 122678726 to 122678755 29 + TSS region transcription start site region 96058
Ppm1h 10 122678762 to 122945795 267033 + protein coding gene protein phosphatase 1H (PP2C domain containing)
Tssr96059 10 122678764 to 122678811 47 + TSS region transcription start site region 96059
Tssr3386 10 122678964 to 122678994 30 - TSS region transcription start site region 3386
Tssr96060 10 122678980 to 122678991 11 + TSS region transcription start site region 96060
Tssr96061 10 122679011 to 122679022 11 + TSS region transcription start site region 96061
Tssr96062 10 122679041 to 122679052 11 + TSS region transcription start site region 96062
Tssr96063 10 122679241 to 122679244 3 + TSS region transcription start site region 96063
Mir8104 10 122679315 to 122679415 100 + miRNA gene microRNA 8104
Tssr99653 10 122679413 to 122679443 30 - TSS region transcription start site region 99653
Tssr96064 10 122680096 to 122680100 4 + TSS region transcription start site region 96064
Cpgi2303 10 122680501 to 122680660 159 CpG island CpG island 2303
Tssr96065 10 122681162 to 122681169 7 + TSS region transcription start site region 96065
Cpgi2304 10 122693490 to 122694149 659 CpG island CpG island 2304
Tssr96066 10 122725357 to 122725360 3 + TSS region transcription start site region 96066
A430028G04Rik 10 122756438 to 122758410 1972 - unclassified gene RIKEN cDNA A430028G04 gene
Tssr96067 10 122757132 to 122757181 49 + TSS region transcription start site region 96067
Gm47582 10 122777480 to 122778065 585 - unclassified gene predicted gene, 47582
Tssr96068 10 122782697 to 122782713 16 + TSS region transcription start site region 96068
Gm36208 10 122792055 to 122792483 428 - antisense lncRNA gene predicted gene, 36208
Tssr96069 10 122795164 to 122795167 3 + TSS region transcription start site region 96069
Cpgi2305 10 122800391 to 122800584 193 CpG island CpG island 2305
Cpgi2306 10 122802139 to 122802618 479 CpG island CpG island 2306
Tssr96070 10 122802200 to 122802221 21 + TSS region transcription start site region 96070
Tssr96071 10 122805550 to 122805552 2 + TSS region transcription start site region 96071
Tssr3387 10 122805894 to 122805940 46 + TSS region transcription start site region 3387
Tssr96072 10 122806075 to 122806079 4 + TSS region transcription start site region 96072
Tssr96073 10 122817970 to 122817987 17 + TSS region transcription start site region 96073
Tssr96074 10 122821175 to 122821179 4 + TSS region transcription start site region 96074
Tssr99654 10 122857397 to 122857442 45 - TSS region transcription start site region 99654
Tssr96075 10 122860367 to 122860408 41 + TSS region transcription start site region 96075
Tssr96076 10 122941975 to 122941979 4 + TSS region transcription start site region 96076
Tssr96077 10 122944723 to 122944727 4 + TSS region transcription start site region 96077
Frct3 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3
Frct3c 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3c
Frct3a 10 122950065 to 129631127 6681062 QTL fear conditioning traits 3a
Cpgi2307 10 122960100 to 122960433 333 CpG island CpG island 2307
Cpgi2308 10 122960882 to 122961051 169 CpG island CpG island 2308
Tssr99655 10 122982343 to 122982346 3 - TSS region transcription start site region 99655
D630033A02Rik 10 122985074 to 122986555 1481 - unclassified gene RIKEN cDNA D630033A02 gene
Cpgi2309 10 122985239 to 122986757 1518 CpG island CpG island 2309
Tssr99656 10 122985636 to 122985642 6 - TSS region transcription start site region 99656
Mirlet7i 10 122985640 to 122985724 84 - miRNA gene microRNA let7i
Tssr99657 10 122986050 to 122986064 14 - TSS region transcription start site region 99657
Tssr99658 10 122986469 to 122986498 29 - TSS region transcription start site region 99658
Tssr96078 10 122986574 to 122986588 14 + TSS region transcription start site region 96078
Mon2 10 122992060 to 123076505 84445 - protein coding gene MON2 homolog, regulator of endosome to Golgi trafficking
D10Mit277 10 123015843 to 123015992 149 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-277
Cpgi2310 10 123075774 to 123076689 915 CpG island CpG island 2310
Tssr99659 10 123076367 to 123076391 24 - TSS region transcription start site region 99659
Usp15 10 123105006 to 123196995 91989 - protein coding gene ubiquitin specific peptidase 15
Tssr99660 10 123147293 to 123147302 9 - TSS region transcription start site region 99660
Tssr99661 10 123147306 to 123147335 29 - TSS region transcription start site region 99661
Tssr99662 10 123147342 to 123147360 18 - TSS region transcription start site region 99662