Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:120541039-121251292

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Jckm1 10 118661259 to 120899582 2238323 QTL juvenile cystic kidney modifier 1
Cpgi2268 10 120552375 to 120553386 1011 CpG island CpG island 2268
Cpgi2269 10 120565012 to 120565194 182 CpG island CpG island 2269
Gm24298 10 120605537 to 120605596 59 + snoRNA gene predicted gene, 24298
Tssr96001 10 120616907 to 120616911 4 + TSS region transcription start site region 96001
Tssr99581 10 120624287 to 120624320 33 - TSS region transcription start site region 99581
Tssr96002 10 120625650 to 120625672 22 + TSS region transcription start site region 96002
Tssr3377 10 120625704 to 120625709 5 - TSS region transcription start site region 3377
Tssr99582 10 120628153 to 120628169 16 - TSS region transcription start site region 99582
4930471E19Rik 10 120632672 to 120699203 66531 - lincRNA gene RIKEN cDNA 4930471E19 gene
Tssr96003 10 120634863 to 120634872 9 + TSS region transcription start site region 96003
Tssr99583 10 120636102 to 120636107 5 - TSS region transcription start site region 99583
Tssr3378 10 120653362 to 120653374 12 - TSS region transcription start site region 3378
Gm38289 10 120663252 to 120667017 3765 - unclassified gene predicted gene, 38289
Tssr99584 10 120686244 to 120686253 9 - TSS region transcription start site region 99584
Gm35062 10 120688412 to 120695179 6767 + lncRNA gene predicted gene, 35062
Cpgi2270 10 120688415 to 120688797 382 CpG island CpG island 2270
Gm35130 10 120717571 to 120719030 1459 - lncRNA gene predicted gene, 35130
Tssr96004 10 120729688 to 120729695 7 + TSS region transcription start site region 96004
Gm37505 10 120731815 to 120732855 1040 + unclassified gene predicted gene, 37505
Gm10743 10 120745976 to 120748333 2357 - unclassified gene predicted gene 10743
Gm35182 10 120751662 to 120752335 673 - lncRNA gene predicted gene, 35182
Gm48202 10 120760821 to 120766028 5207 - lincRNA gene predicted gene, 48202
4921513I03Rik 10 120765732 to 120778886 13154 + lincRNA gene RIKEN cDNA 4921513I03 gene
Tssr96005 10 120775980 to 120775982 2 + TSS region transcription start site region 96005
Msrb3 10 120781096 to 120899101 118005 - protein coding gene methionine sulfoxide reductase B3
Tssr99585 10 120782015 to 120782043 28 - TSS region transcription start site region 99585
Tssr99586 10 120782047 to 120782065 18 - TSS region transcription start site region 99586
Tssr99587 10 120782332 to 120782344 12 - TSS region transcription start site region 99587
Tssr99588 10 120782700 to 120782703 3 - TSS region transcription start site region 99588
Tssr99589 10 120783310 to 120783316 6 - TSS region transcription start site region 99589
Tssr96006 10 120787256 to 120787264 8 + TSS region transcription start site region 96006
Tssr96007 10 120787285 to 120787297 12 + TSS region transcription start site region 96007
Gm15961 10 120800677 to 120801794 1117 + antisense lncRNA gene predicted gene 15961
Tssr99590 10 120805592 to 120805613 21 - TSS region transcription start site region 99590
Cpgi2271 10 120811993 to 120812261 268 CpG island CpG island 2271
Gm15910 10 120857629 to 120863326 5697 + antisense lncRNA gene predicted gene 15910
Tssr3379 10 120882659 to 120882687 28 + TSS region transcription start site region 3379
Tssr99591 10 120895327 to 120895337 10 - TSS region transcription start site region 99591
Cpgi2272 10 120896039 to 120896292 253 CpG island CpG island 2272
Cpgi2273 10 120897122 to 120897441 319 CpG island CpG island 2273
Cpgi2274 10 120898318 to 120899456 1138 CpG island CpG island 2274
Tssr99592 10 120898522 to 120898534 12 - TSS region transcription start site region 99592
Tssr99593 10 120898882 to 120898896 14 - TSS region transcription start site region 99593
Tssr99594 10 120898910 to 120898954 44 - TSS region transcription start site region 99594
Tssr99595 10 120898964 to 120898988 24 - TSS region transcription start site region 99595
Tssr99596 10 120898989 to 120899011 22 - TSS region transcription start site region 99596
Tssr99597 10 120899026 to 120899037 11 - TSS region transcription start site region 99597
Tssr99598 10 120899051 to 120899062 11 - TSS region transcription start site region 99598
Tssr99599 10 120899067 to 120899076 9 - TSS region transcription start site region 99599
Tssr99600 10 120899095 to 120899106 11 - TSS region transcription start site region 99600
Gm4473 10 120899157 to 120901888 2731 + bidirectional promoter lncRNA gene predicted gene 4473
D10Mit102 10 120899434 to 120899582 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 102
Tssr96008 10 120899897 to 120899901 4 + TSS region transcription start site region 96008
Lemd3 10 120923413 to 120979332 55919 - protein coding gene LEM domain containing 3
Gm16166 10 120928186 to 120928972 786 + pseudogene predicted gene 16166
Gm23632 10 120974301 to 120974425 124 - miRNA gene predicted gene, 23632
Cpgi2275 10 120977723 to 120979885 2162 CpG island CpG island 2275
Tssr99601 10 120979313 to 120979322 9 - TSS region transcription start site region 99601
Tssr99602 10 120979327 to 120979373 46 - TSS region transcription start site region 99602
Gm35235 10 120979366 to 120980149 783 + lncRNA gene predicted gene, 35235
Tssr96009 10 120979406 to 120979425 19 + TSS region transcription start site region 96009
Gm48341 10 120984756 to 121001061 16305 - lincRNA gene predicted gene, 48341
Lgth11 10 121000000 to 91000000 -30000000 QTL body length 11
Wght9 10 121000000 to 60000000 -61000000 QTL weight 9
Gm40784 10 121022648 to 121029885 7237 + lncRNA gene predicted gene, 40784
Cpgi2276 10 121033588 to 121034466 878 CpG island CpG island 2276
Tssr96010 10 121033960 to 121033983 23 + TSS region transcription start site region 96010
Tssr96011 10 121033985 to 121034012 27 + TSS region transcription start site region 96011
Wif1 10 121034004 to 121100642 66638 + protein coding gene Wnt inhibitory factor 1
Tssr96012 10 121034014 to 121034038 24 + TSS region transcription start site region 96012
Tssr96013 10 121034040 to 121034049 9 + TSS region transcription start site region 96013
Tssr96014 10 121034059 to 121034074 15 + TSS region transcription start site region 96014
Tssr96015 10 121034144 to 121034153 9 + TSS region transcription start site region 96015
Tssr3380 10 121034154 to 121034159 5 + TSS region transcription start site region 3380
Tssr96016 10 121034168 to 121034197 29 + TSS region transcription start site region 96016
Tssr96017 10 121034199 to 121034218 19 + TSS region transcription start site region 96017
Tssr3381 10 121034228 to 121034231 3 + TSS region transcription start site region 3381
Tssr96018 10 121034248 to 121034265 17 + TSS region transcription start site region 96018
Tssr96019 10 121034273 to 121034292 19 + TSS region transcription start site region 96019
Tssr96020 10 121096588 to 121096618 30 + TSS region transcription start site region 96020
Gm48410 10 121113524 to 121115245 1721 - lincRNA gene predicted gene, 48410
Cpgi2277 10 121124517 to 121124712 195 CpG island CpG island 2277
Gm10741 10 121160845 to 121162530 1685 - lncRNA gene predicted gene 10741
Gm48426 10 121185030 to 121185511 481 - unclassified gene predicted gene, 48426
4930432O09Rik 10 121199141 to 121202649 3508 - lincRNA gene RIKEN cDNA 4930432O09 gene
Tssr3382 10 121202749 to 121202752 3 + TSS region transcription start site region 3382
Gm35404 10 121243002 to 121243843 841 + lincRNA gene predicted gene, 35404
Cpgi2278 10 121247049 to 121247273 224 CpG island CpG island 2278