Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:120199688-120519850

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Irak3 10 120141648 to 120201744 60096 - protein coding gene interleukin-1 receptor-associated kinase 3
Cpgi2260 10 120201087 to 120202106 1019 CpG island CpG island 2260
Tssr99558 10 120201090 to 120201109 19 - TSS region transcription start site region 99558
Tssr99559 10 120201196 to 120201233 37 - TSS region transcription start site region 99559
Tssr99560 10 120201413 to 120201426 13 - TSS region transcription start site region 99560
Tssr99561 10 120201464 to 120201483 19 - TSS region transcription start site region 99561
Tssr99562 10 120201499 to 120201554 55 - TSS region transcription start site region 99562
Tssr99563 10 120201558 to 120201575 17 - TSS region transcription start site region 99563
Tssr95985 10 120201586 to 120201660 74 + TSS region transcription start site region 95985
Gm38500 10 120201754 to 120203647 1893 + lncRNA gene predicted gene, 38500
Cpgi2261 10 120208615 to 120209314 699 CpG island CpG island 2261
Tssr95986 10 120208739 to 120208781 42 + TSS region transcription start site region 95986
Tssr95987 10 120208784 to 120208801 17 + TSS region transcription start site region 95987
Tssr95988 10 120208803 to 120208808 5 + TSS region transcription start site region 95988
Tssr95989 10 120208814 to 120208842 28 + TSS region transcription start site region 95989
Tmbim4 10 120208826 to 120224897 16071 + protein coding gene transmembrane BAX inhibitor motif containing 4
Tssr95990 10 120213007 to 120213026 19 + TSS region transcription start site region 95990
Gm40782 10 120222130 to 120223529 1399 + lncRNA gene predicted gene, 40782
Cpgi2262 10 120226931 to 120227810 879 CpG island CpG island 2262
Tssr95991 10 120227030 to 120227081 51 + TSS region transcription start site region 95991
Llph 10 120227060 to 120232071 5011 + protein coding gene LLP homolog, long-term synaptic facilitation (Aplysia)
Tssr95992 10 120227109 to 120227148 39 + TSS region transcription start site region 95992
Tssr95993 10 120227298 to 120227330 32 + TSS region transcription start site region 95993
Tssr3375 10 120227879 to 120227886 7 + TSS region transcription start site region 3375
Tssr95994 10 120230359 to 120230363 4 + TSS region transcription start site region 95994
Gm48115 10 120281240 to 120282199 959 + unclassified gene predicted gene, 48115
Gm48118 10 120287078 to 120287272 194 - pseudogene predicted gene, 48118
Cpgi2263 10 120303942 to 120304336 394 CpG island CpG island 2263
Gm38141 10 120310278 to 120312812 2534 + unclassified gene predicted gene, 38141
Tssr95995 10 120317040 to 120317053 13 + TSS region transcription start site region 95995
Cpgi2264 10 120328081 to 120328264 183 CpG island CpG island 2264
D10Hgu1 10 120359688 to 120359850 162 DNA segment DNA segment, Chr 10, Human Genetics Unit 1
Hmga2 10 120361275 to 120476469 115194 - protein coding gene high mobility group AT-hook 2
Tssr99564 10 120362666 to 120362669 3 - TSS region transcription start site region 99564
Tssr99565 10 120363732 to 120363745 13 - TSS region transcription start site region 99565
Tssr95996 10 120364134 to 120364176 42 + TSS region transcription start site region 95996
1700006J14Rik 10 120364157 to 120384336 20179 + antisense lncRNA gene RIKEN cDNA 1700006J14 gene
Gm40783 10 120365902 to 120368706 2804 + lncRNA gene predicted gene, 40783
Tssr99566 10 120370198 to 120370201 3 - TSS region transcription start site region 99566
Tssr95997 10 120380716 to 120380718 2 + TSS region transcription start site region 95997
Tssr95998 10 120388609 to 120388628 19 + TSS region transcription start site region 95998
9230105E05Rik 10 120389523 to 120392793 3270 + antisense lncRNA gene RIKEN cDNA 9230105E05 gene
Obrq10 10 120407822 to 120407822 0 QTL obesity resistance QTL 10
Pcholq2 10 120407822 to 125680038 5272216 QTL plasma cholesterol QTL 2
Gluq3 10 120407822 to 125680038 5272216 QTL blood glucose QTL 3
Tssr99567 10 120408322 to 120408327 5 - TSS region transcription start site region 99567
Cpgi2265 10 120414643 to 120414898 255 CpG island CpG island 2265
Cpgi2266 10 120428568 to 120429216 648 CpG island CpG island 2266
Mir763 10 120447991 to 120448110 119 - miRNA gene microRNA 763
Tssr95999 10 120461998 to 120462007 9 + TSS region transcription start site region 95999
Tssr96000 10 120462012 to 120462023 11 + TSS region transcription start site region 96000
Tssr3376 10 120462895 to 120462904 9 - TSS region transcription start site region 3376
Cpgi2267 10 120474990 to 120477784 2794 CpG island CpG island 2267
Tssr99568 10 120476210 to 120476221 11 - TSS region transcription start site region 99568
Tssr99569 10 120476222 to 120476242 20 - TSS region transcription start site region 99569
Tssr99570 10 120476245 to 120476246 1 - TSS region transcription start site region 99570
Tssr99571 10 120476254 to 120476310 56 - TSS region transcription start site region 99571
Tssr99572 10 120476311 to 120476320 9 - TSS region transcription start site region 99572
Tssr99573 10 120476472 to 120476483 11 - TSS region transcription start site region 99573
Tssr99574 10 120476490 to 120476527 37 - TSS region transcription start site region 99574
Tssr99575 10 120476710 to 120476723 13 - TSS region transcription start site region 99575
Tssr99576 10 120476736 to 120476764 28 - TSS region transcription start site region 99576
Tssr99577 10 120476783 to 120476813 30 - TSS region transcription start site region 99577
Tssr99578 10 120476898 to 120476916 18 - TSS region transcription start site region 99578
Tssr99579 10 120476918 to 120476936 18 - TSS region transcription start site region 99579
Tssr99580 10 120476945 to 120477022 77 - TSS region transcription start site region 99580