Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:120173989-121624011

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251 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Jckm1 10 118661259 to 120899582 2238323 QTL juvenile cystic kidney modifier 1
Irak3 10 120141648 to 120201744 60096 - protein coding gene interleukin-1 receptor-associated kinase 3
Gm34545 10 120173773 to 120190715 16942 + lncRNA gene predicted gene, 34545
Tssr99549 10 120174315 to 120174318 3 - TSS region transcription start site region 99549
Tssr99550 10 120174334 to 120174365 31 - TSS region transcription start site region 99550
Tssr95984 10 120174553 to 120174562 9 + TSS region transcription start site region 95984
Tssr99551 10 120175766 to 120175775 9 - TSS region transcription start site region 99551
Gm40781 10 120190723 to 120194736 4013 + lncRNA gene predicted gene, 40781
Tssr99552 10 120193340 to 120193353 13 - TSS region transcription start site region 99552
Tssr99553 10 120193368 to 120193379 11 - TSS region transcription start site region 99553
Tssr99554 10 120193380 to 120193396 16 - TSS region transcription start site region 99554
Tssr99555 10 120193420 to 120193436 16 - TSS region transcription start site region 99555
Tssr99556 10 120193780 to 120193803 23 - TSS region transcription start site region 99556
Tssr99557 10 120198644 to 120198665 21 - TSS region transcription start site region 99557
Cpgi2260 10 120201087 to 120202106 1019 CpG island CpG island 2260
Tssr99558 10 120201090 to 120201109 19 - TSS region transcription start site region 99558
Tssr99559 10 120201196 to 120201233 37 - TSS region transcription start site region 99559
Tssr99560 10 120201413 to 120201426 13 - TSS region transcription start site region 99560
Tssr99561 10 120201464 to 120201483 19 - TSS region transcription start site region 99561
Tssr99562 10 120201499 to 120201554 55 - TSS region transcription start site region 99562
Tssr99563 10 120201558 to 120201575 17 - TSS region transcription start site region 99563
Tssr95985 10 120201586 to 120201660 74 + TSS region transcription start site region 95985
Gm38500 10 120201754 to 120203647 1893 + lncRNA gene predicted gene, 38500
Cpgi2261 10 120208615 to 120209314 699 CpG island CpG island 2261
Tssr95986 10 120208739 to 120208781 42 + TSS region transcription start site region 95986
Tssr95987 10 120208784 to 120208801 17 + TSS region transcription start site region 95987
Tssr95988 10 120208803 to 120208808 5 + TSS region transcription start site region 95988
Tssr95989 10 120208814 to 120208842 28 + TSS region transcription start site region 95989
Tmbim4 10 120208826 to 120224897 16071 + protein coding gene transmembrane BAX inhibitor motif containing 4
Tssr95990 10 120213007 to 120213026 19 + TSS region transcription start site region 95990
Gm40782 10 120222130 to 120223529 1399 + lncRNA gene predicted gene, 40782
Cpgi2262 10 120226931 to 120227810 879 CpG island CpG island 2262
Tssr95991 10 120227030 to 120227081 51 + TSS region transcription start site region 95991
Llph 10 120227060 to 120232071 5011 + protein coding gene LLP homolog, long-term synaptic facilitation (Aplysia)
Tssr95992 10 120227109 to 120227148 39 + TSS region transcription start site region 95992
Tssr95993 10 120227298 to 120227330 32 + TSS region transcription start site region 95993
Tssr3375 10 120227879 to 120227886 7 + TSS region transcription start site region 3375
Tssr95994 10 120230359 to 120230363 4 + TSS region transcription start site region 95994
Gm48115 10 120281240 to 120282199 959 + unclassified gene predicted gene, 48115
Gm48118 10 120287078 to 120287272 194 - pseudogene predicted gene, 48118
Cpgi2263 10 120303942 to 120304336 394 CpG island CpG island 2263
Gm38141 10 120310278 to 120312812 2534 + unclassified gene predicted gene, 38141
Tssr95995 10 120317040 to 120317053 13 + TSS region transcription start site region 95995
Cpgi2264 10 120328081 to 120328264 183 CpG island CpG island 2264
D10Hgu1 10 120359688 to 120359850 162 DNA segment DNA segment, Chr 10, Human Genetics Unit 1
Hmga2 10 120361275 to 120476469 115194 - protein coding gene high mobility group AT-hook 2
Tssr99564 10 120362666 to 120362669 3 - TSS region transcription start site region 99564
Tssr99565 10 120363732 to 120363745 13 - TSS region transcription start site region 99565
Tssr95996 10 120364134 to 120364176 42 + TSS region transcription start site region 95996
1700006J14Rik 10 120364157 to 120384336 20179 + antisense lncRNA gene RIKEN cDNA 1700006J14 gene
Gm40783 10 120365902 to 120368706 2804 + lncRNA gene predicted gene, 40783
Tssr99566 10 120370198 to 120370201 3 - TSS region transcription start site region 99566
Tssr95997 10 120380716 to 120380718 2 + TSS region transcription start site region 95997
Tssr95998 10 120388609 to 120388628 19 + TSS region transcription start site region 95998
9230105E05Rik 10 120389523 to 120392793 3270 + antisense lncRNA gene RIKEN cDNA 9230105E05 gene
Pcholq2 10 120407822 to 125680038 5272216 QTL plasma cholesterol QTL 2
Gluq3 10 120407822 to 125680038 5272216 QTL blood glucose QTL 3
Obrq10 10 120407822 to 120407822 0 QTL obesity resistance QTL 10
Tssr99567 10 120408322 to 120408327 5 - TSS region transcription start site region 99567
Cpgi2265 10 120414643 to 120414898 255 CpG island CpG island 2265
Cpgi2266 10 120428568 to 120429216 648 CpG island CpG island 2266
Mir763 10 120447991 to 120448110 119 - miRNA gene microRNA 763
Tssr95999 10 120461998 to 120462007 9 + TSS region transcription start site region 95999
Tssr96000 10 120462012 to 120462023 11 + TSS region transcription start site region 96000
Tssr3376 10 120462895 to 120462904 9 - TSS region transcription start site region 3376
Cpgi2267 10 120474990 to 120477784 2794 CpG island CpG island 2267
Tssr99568 10 120476210 to 120476221 11 - TSS region transcription start site region 99568
Tssr99569 10 120476222 to 120476242 20 - TSS region transcription start site region 99569
Tssr99570 10 120476245 to 120476246 1 - TSS region transcription start site region 99570
Tssr99571 10 120476254 to 120476310 56 - TSS region transcription start site region 99571
Tssr99572 10 120476311 to 120476320 9 - TSS region transcription start site region 99572
Tssr99573 10 120476472 to 120476483 11 - TSS region transcription start site region 99573
Tssr99574 10 120476490 to 120476527 37 - TSS region transcription start site region 99574
Tssr99575 10 120476710 to 120476723 13 - TSS region transcription start site region 99575
Tssr99576 10 120476736 to 120476764 28 - TSS region transcription start site region 99576
Tssr99577 10 120476783 to 120476813 30 - TSS region transcription start site region 99577
Tssr99578 10 120476898 to 120476916 18 - TSS region transcription start site region 99578
Tssr99579 10 120476918 to 120476936 18 - TSS region transcription start site region 99579
Tssr99580 10 120476945 to 120477022 77 - TSS region transcription start site region 99580
Gm34952 10 120528444 to 120538045 9601 + lncRNA gene predicted gene, 34952
Cpgi2268 10 120552375 to 120553386 1011 CpG island CpG island 2268
Cpgi2269 10 120565012 to 120565194 182 CpG island CpG island 2269
Gm24298 10 120605537 to 120605596 59 + snoRNA gene predicted gene, 24298
Tssr96001 10 120616907 to 120616911 4 + TSS region transcription start site region 96001
Tssr99581 10 120624287 to 120624320 33 - TSS region transcription start site region 99581
Tssr96002 10 120625650 to 120625672 22 + TSS region transcription start site region 96002
Tssr3377 10 120625704 to 120625709 5 - TSS region transcription start site region 3377
Tssr99582 10 120628153 to 120628169 16 - TSS region transcription start site region 99582
4930471E19Rik 10 120632672 to 120699203 66531 - lincRNA gene RIKEN cDNA 4930471E19 gene
Tssr96003 10 120634863 to 120634872 9 + TSS region transcription start site region 96003
Tssr99583 10 120636102 to 120636107 5 - TSS region transcription start site region 99583
Tssr3378 10 120653362 to 120653374 12 - TSS region transcription start site region 3378
Gm38289 10 120663252 to 120667017 3765 - unclassified gene predicted gene, 38289
Tssr99584 10 120686244 to 120686253 9 - TSS region transcription start site region 99584
Gm35062 10 120688412 to 120695179 6767 + lncRNA gene predicted gene, 35062
Cpgi2270 10 120688415 to 120688797 382 CpG island CpG island 2270
Gm35130 10 120717571 to 120719030 1459 - lncRNA gene predicted gene, 35130
Tssr96004 10 120729688 to 120729695 7 + TSS region transcription start site region 96004
Gm37505 10 120731815 to 120732855 1040 + unclassified gene predicted gene, 37505
Gm10743 10 120745976 to 120748333 2357 - unclassified gene predicted gene 10743
Gm35182 10 120751662 to 120752335 673 - lncRNA gene predicted gene, 35182
Gm48202 10 120760821 to 120766028 5207 - lincRNA gene predicted gene, 48202
4921513I03Rik 10 120765732 to 120778886 13154 + lincRNA gene RIKEN cDNA 4921513I03 gene
Tssr96005 10 120775980 to 120775982 2 + TSS region transcription start site region 96005
Msrb3 10 120781096 to 120899101 118005 - protein coding gene methionine sulfoxide reductase B3
Tssr99585 10 120782015 to 120782043 28 - TSS region transcription start site region 99585
Tssr99586 10 120782047 to 120782065 18 - TSS region transcription start site region 99586
Tssr99587 10 120782332 to 120782344 12 - TSS region transcription start site region 99587
Tssr99588 10 120782700 to 120782703 3 - TSS region transcription start site region 99588
Tssr99589 10 120783310 to 120783316 6 - TSS region transcription start site region 99589
Tssr96006 10 120787256 to 120787264 8 + TSS region transcription start site region 96006
Tssr96007 10 120787285 to 120787297 12 + TSS region transcription start site region 96007
Gm15961 10 120800677 to 120801794 1117 + antisense lncRNA gene predicted gene 15961
Tssr99590 10 120805592 to 120805613 21 - TSS region transcription start site region 99590
Cpgi2271 10 120811993 to 120812261 268 CpG island CpG island 2271
Gm15910 10 120857629 to 120863326 5697 + antisense lncRNA gene predicted gene 15910
Tssr3379 10 120882659 to 120882687 28 + TSS region transcription start site region 3379
Tssr99591 10 120895327 to 120895337 10 - TSS region transcription start site region 99591
Cpgi2272 10 120896039 to 120896292 253 CpG island CpG island 2272
Cpgi2273 10 120897122 to 120897441 319 CpG island CpG island 2273
Cpgi2274 10 120898318 to 120899456 1138 CpG island CpG island 2274
Tssr99592 10 120898522 to 120898534 12 - TSS region transcription start site region 99592
Tssr99593 10 120898882 to 120898896 14 - TSS region transcription start site region 99593
Tssr99594 10 120898910 to 120898954 44 - TSS region transcription start site region 99594
Tssr99595 10 120898964 to 120898988 24 - TSS region transcription start site region 99595
Tssr99596 10 120898989 to 120899011 22 - TSS region transcription start site region 99596
Tssr99597 10 120899026 to 120899037 11 - TSS region transcription start site region 99597
Tssr99598 10 120899051 to 120899062 11 - TSS region transcription start site region 99598
Tssr99599 10 120899067 to 120899076 9 - TSS region transcription start site region 99599
Tssr99600 10 120899095 to 120899106 11 - TSS region transcription start site region 99600
Gm4473 10 120899157 to 120901888 2731 + bidirectional promoter lncRNA gene predicted gene 4473
D10Mit102 10 120899434 to 120899582 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 102
Tssr96008 10 120899897 to 120899901 4 + TSS region transcription start site region 96008
Lemd3 10 120923413 to 120979332 55919 - protein coding gene LEM domain containing 3
Gm16166 10 120928186 to 120928972 786 + pseudogene predicted gene 16166
Gm23632 10 120974301 to 120974425 124 - miRNA gene predicted gene, 23632
Cpgi2275 10 120977723 to 120979885 2162 CpG island CpG island 2275
Tssr99601 10 120979313 to 120979322 9 - TSS region transcription start site region 99601
Tssr99602 10 120979327 to 120979373 46 - TSS region transcription start site region 99602
Gm35235 10 120979366 to 120980149 783 + lncRNA gene predicted gene, 35235
Tssr96009 10 120979406 to 120979425 19 + TSS region transcription start site region 96009
Gm48341 10 120984756 to 121001061 16305 - lincRNA gene predicted gene, 48341
Wght9 10 121000000 to 60000000 -61000000 QTL weight 9
Lgth11 10 121000000 to 91000000 -30000000 QTL body length 11
Gm40784 10 121022648 to 121029885 7237 + lncRNA gene predicted gene, 40784
Cpgi2276 10 121033588 to 121034466 878 CpG island CpG island 2276
Tssr96010 10 121033960 to 121033983 23 + TSS region transcription start site region 96010
Tssr96011 10 121033985 to 121034012 27 + TSS region transcription start site region 96011
Wif1 10 121034004 to 121100642 66638 + protein coding gene Wnt inhibitory factor 1
Tssr96012 10 121034014 to 121034038 24 + TSS region transcription start site region 96012
Tssr96013 10 121034040 to 121034049 9 + TSS region transcription start site region 96013
Tssr96014 10 121034059 to 121034074 15 + TSS region transcription start site region 96014
Tssr96015 10 121034144 to 121034153 9 + TSS region transcription start site region 96015
Tssr3380 10 121034154 to 121034159 5 + TSS region transcription start site region 3380
Tssr96016 10 121034168 to 121034197 29 + TSS region transcription start site region 96016
Tssr96017 10 121034199 to 121034218 19 + TSS region transcription start site region 96017
Tssr3381 10 121034228 to 121034231 3 + TSS region transcription start site region 3381
Tssr96018 10 121034248 to 121034265 17 + TSS region transcription start site region 96018
Tssr96019 10 121034273 to 121034292 19 + TSS region transcription start site region 96019
Tssr96020 10 121096588 to 121096618 30 + TSS region transcription start site region 96020
Gm48410 10 121113524 to 121115245 1721 - lincRNA gene predicted gene, 48410
Cpgi2277 10 121124517 to 121124712 195 CpG island CpG island 2277
Gm10741 10 121160845 to 121162530 1685 - lncRNA gene predicted gene 10741
Gm48426 10 121185030 to 121185511 481 - unclassified gene predicted gene, 48426
4930432O09Rik 10 121199141 to 121202649 3508 - lincRNA gene RIKEN cDNA 4930432O09 gene
Tssr3382 10 121202749 to 121202752 3 + TSS region transcription start site region 3382
Gm35404 10 121243002 to 121243843 841 + lincRNA gene predicted gene, 35404
Cpgi2278 10 121247049 to 121247273 224 CpG island CpG island 2278
Tbc1d30 10 121263819 to 121311189 47370 - protein coding gene TBC1 domain family, member 30
Cpgi2279 10 121267052 to 121267390 338 CpG island CpG island 2279
Tgq21 10 121274116 to 121274116 0 QTL triglyceride QTL 21
Cpgi2280 10 121294589 to 121294819 230 CpG island CpG island 2280
Cpgi2281 10 121297274 to 121297480 206 CpG island CpG island 2281
Tssr99603 10 121297369 to 121297385 16 - TSS region transcription start site region 99603
Cpgi2282 10 121310026 to 121311367 1341 CpG island CpG island 2282
Tssr3383 10 121310822 to 121310823 1 + TSS region transcription start site region 3383
Tssr99604 10 121310989 to 121311003 14 - TSS region transcription start site region 99604
Tssr99605 10 121311007 to 121311031 24 - TSS region transcription start site region 99605
Tssr99606 10 121311034 to 121311051 17 - TSS region transcription start site region 99606
Gm18987 10 121312157 to 121312697 540 - pseudogene predicted gene, 18987
Tssr96021 10 121316770 to 121316776 6 + TSS region transcription start site region 96021
Gm4478 10 121343176 to 121343658 482 + pseudogene predicted gene 4478
Cpgi2283 10 121350393 to 121351606 1213 CpG island CpG island 2283
Gm48435 10 121350460 to 121351644 1184 + antisense lncRNA gene predicted gene, 48435
Gm40785 10 121358017 to 121360034 2017 - lncRNA gene predicted gene, 40785
Cpgi2284 10 121364577 to 121365956 1379 CpG island CpG island 2284
Tssr96022 10 121365078 to 121365158 80 + TSS region transcription start site region 96022
Gns 10 121365090 to 121397245 32155 + protein coding gene glucosamine (N-acetyl)-6-sulfatase
Tssr96023 10 121369127 to 121369133 6 + TSS region transcription start site region 96023
Tssr96024 10 121374350 to 121374368 18 + TSS region transcription start site region 96024
Tssr96025 10 121374401 to 121374439 38 + TSS region transcription start site region 96025
Tssr99607 10 121374450 to 121374481 31 - TSS region transcription start site region 99607
Tssr96026 10 121376222 to 121376245 23 + TSS region transcription start site region 96026
Tssr96027 10 121376453 to 121376478 25 + TSS region transcription start site region 96027
Tssr96028 10 121377186 to 121377215 29 + TSS region transcription start site region 96028
Tssr96029 10 121381167 to 121381183 16 + TSS region transcription start site region 96029
Tssr96030 10 121392801 to 121392814 13 + TSS region transcription start site region 96030
Tssr96031 10 121395166 to 121395212 46 + TSS region transcription start site region 96031
Tssr96032 10 121395251 to 121395273 22 + TSS region transcription start site region 96032
Tssr96033 10 121395321 to 121395369 48 + TSS region transcription start site region 96033