Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:119281347-123971380

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521 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Recrq11 10 114500000 to 123800000 9300000 QTL recombination rate in male meiosis QTL 11
Lmr5 10 116384730 to 122343923 5959193 QTL leishmaniasis resistance 5
Jckm1 10 118661259 to 120899582 2238323 QTL juvenile cystic kidney modifier 1
Tssr99523 10 119298690 to 119298691 1 - TSS region transcription start site region 99523
4930477N07Rik 10 119320234 to 119331862 11628 + lincRNA gene RIKEN cDNA 4930477N07 gene
Gm19090 10 119342492 to 119343265 773 + pseudogene predicted gene, 19090
Gm40778 10 119409879 to 119411222 1343 - lncRNA gene predicted gene, 40778
Tssr95959 10 119413432 to 119413439 7 + TSS region transcription start site region 95959
1700025F24Rik 10 119413444 to 119426864 13420 + lincRNA gene RIKEN cDNA 1700025F24 gene
Tssr95960 10 119413455 to 119413475 20 + TSS region transcription start site region 95960
D10Mit235.1 10 119415347 to 119415485 138 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 235.1
D10Mit235 10 119415463 to 119415580 117 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 235
Grip1os3 10 119429367 to 119455379 26012 - antisense lncRNA gene glutamate receptor interacting protein 1, opposite strand 3
D10Mit164 10 119435755 to 119435877 122 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 164
Gm16321 10 119442679 to 119443624 945 - antisense lncRNA gene predicted gene 16321
Cpgi2256 10 119453154 to 119455129 1975 CpG island CpG island 2256
Tssr95961 10 119453538 to 119453608 70 + TSS region transcription start site region 95961
Grip1 10 119453830 to 120087261 633431 + protein coding gene glutamate receptor interacting protein 1
Gm47341 10 119462350 to 119464521 2171 + unclassified gene predicted gene, 47341
Tssr95962 10 119468723 to 119468725 2 + TSS region transcription start site region 95962
Gm47024 10 119471318 to 119473888 2570 + unclassified gene predicted gene, 47024
Tssr95963 10 119481515 to 119481518 3 + TSS region transcription start site region 95963
Cpgi2257 10 119490917 to 119491138 221 CpG island CpG island 2257
Tssr95964 10 119502131 to 119502169 38 + TSS region transcription start site region 95964
Tssr95965 10 119502724 to 119502736 12 + TSS region transcription start site region 95965
Gm47342 10 119523838 to 119524458 620 + unclassified gene predicted gene, 47342
Tssr95966 10 119548748 to 119548752 4 + TSS region transcription start site region 95966
Tssr95967 10 119549473 to 119549477 4 + TSS region transcription start site region 95967
Gm47027 10 119600363 to 119617720 17357 - antisense lncRNA gene predicted gene, 47027
Gm40780 10 119629735 to 119646813 17078 + lncRNA gene predicted gene, 40780
Gm47026 10 119654064 to 119656395 2331 + unclassified gene predicted gene, 47026
Tssr3370 10 119665144 to 119665145 1 + TSS region transcription start site region 3370
Leg2 10 119671003 to 119671105 102 QTL longevity extending gene 2
D10Mit267 10 119671003 to 119671105 102 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 267
Aggr1 10 119671003 to 125739363 6068360 QTL aggression 1
Tssr95968 10 119672681 to 119672706 25 + TSS region transcription start site region 95968
Tssr95969 10 119692009 to 119692026 17 + TSS region transcription start site region 95969
Tssr95970 10 119692033 to 119692048 15 + TSS region transcription start site region 95970
Tssr95971 10 119692050 to 119692069 19 + TSS region transcription start site region 95971
Tssr95972 10 119692395 to 119692407 12 + TSS region transcription start site region 95972
Tssr3371 10 119692424 to 119692433 9 + TSS region transcription start site region 3371
Grip1os2 10 119746063 to 119761699 15636 - antisense lncRNA gene glutamate receptor interacting protein 1, opposite strand 2
Gm46207 10 119759618 to 119762392 2774 + lncRNA gene predicted gene, 46207
Tssr95973 10 119819493 to 119819541 48 + TSS region transcription start site region 95973
Grip1os1 10 119825204 to 119852390 27186 - antisense lncRNA gene glutamate receptor interacting protein 1, opposite strand 1
Tssr3372 10 119827898 to 119827899 1 + TSS region transcription start site region 3372
Tssr99524 10 119850663 to 119850673 10 - TSS region transcription start site region 99524
Tssr99525 10 119850680 to 119850687 7 - TSS region transcription start site region 99525
Tssr95974 10 119850734 to 119850755 21 + TSS region transcription start site region 95974
D10Mit204 10 119915147 to 119915244 97 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 204
D10Mit187 10 119987251 to 119987504 253 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 187
Tssr95975 10 119992897 to 119992904 7 + TSS region transcription start site region 95975
Tssr3373 10 119992911 to 119992912 1 + TSS region transcription start site region 3373
Tssr95976 10 119992916 to 119992958 42 + TSS region transcription start site region 95976
Tssr95977 10 119992962 to 119992972 10 + TSS region transcription start site region 95977
Hwtf2 10 120000000 to 122000000 2000000 QTL heart weight by femur 2
D10Mit237 10 120011947 to 120012034 87 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 237
Exq1 10 120011947 to 120012034 87 QTL exploratory and excitability QTL 1
Helb 10 120083608 to 120112987 29379 - protein coding gene helicase (DNA) B
Tssr99526 10 120092696 to 120092744 48 - TSS region transcription start site region 99526
Cpgi2258 10 120112513 to 120113383 870 CpG island CpG island 2258
Tssr99527 10 120112865 to 120112911 46 - TSS region transcription start site region 99527
Tssr99528 10 120112913 to 120112945 32 - TSS region transcription start site region 99528
Tssr99529 10 120112946 to 120112959 13 - TSS region transcription start site region 99529
Tssr99530 10 120112985 to 120113002 17 - TSS region transcription start site region 99530
Tssr95978 10 120113083 to 120113100 17 + TSS region transcription start site region 95978
Cpgi2259 10 120120076 to 120120378 302 CpG island CpG island 2259
Tssr99531 10 120140612 to 120140617 5 - TSS region transcription start site region 99531
Irak3 10 120141648 to 120201744 60096 - protein coding gene interleukin-1 receptor-associated kinase 3
Tssr99532 10 120142174 to 120142186 12 - TSS region transcription start site region 99532
Tssr99533 10 120142425 to 120142448 23 - TSS region transcription start site region 99533
Tssr99534 10 120142752 to 120142777 25 - TSS region transcription start site region 99534
Tssr99535 10 120142802 to 120142813 11 - TSS region transcription start site region 99535
Tssr99536 10 120142840 to 120142862 22 - TSS region transcription start site region 99536
D10Mit236 10 120158645 to 120158820 175 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 236
Tssr99537 10 120158805 to 120158836 31 - TSS region transcription start site region 99537
Tssr99538 10 120159479 to 120159546 67 - TSS region transcription start site region 99538
Tssr99539 10 120159566 to 120159584 18 - TSS region transcription start site region 99539
Tssr99540 10 120159604 to 120159619 15 - TSS region transcription start site region 99540
Tssr99541 10 120160100 to 120160106 6 - TSS region transcription start site region 99541
Tssr3374 10 120160375 to 120160379 4 + TSS region transcription start site region 3374
Tssr95979 10 120160709 to 120160731 22 + TSS region transcription start site region 95979
Tssr99542 10 120161441 to 120161452 11 - TSS region transcription start site region 99542
Tssr95980 10 120162210 to 120162220 10 + TSS region transcription start site region 95980
Tssr95981 10 120165390 to 120165395 5 + TSS region transcription start site region 95981
Gm47009 10 120168649 to 120170345 1696 + antisense lncRNA gene predicted gene, 47009
Tssr95982 10 120169407 to 120169418 11 + TSS region transcription start site region 95982
Tssr99543 10 120170332 to 120170343 11 - TSS region transcription start site region 99543
Tssr99544 10 120170413 to 120170422 9 - TSS region transcription start site region 99544
Tssr99545 10 120170433 to 120170454 21 - TSS region transcription start site region 99545
Tssr99546 10 120171313 to 120171326 13 - TSS region transcription start site region 99546
Tssr99547 10 120171350 to 120171357 7 - TSS region transcription start site region 99547
Tssr95983 10 120172015 to 120172020 5 + TSS region transcription start site region 95983
Tssr99548 10 120173672 to 120173700 28 - TSS region transcription start site region 99548
Gm34545 10 120173773 to 120190715 16942 + lncRNA gene predicted gene, 34545
Tssr99549 10 120174315 to 120174318 3 - TSS region transcription start site region 99549
Tssr99550 10 120174334 to 120174365 31 - TSS region transcription start site region 99550
Tssr95984 10 120174553 to 120174562 9 + TSS region transcription start site region 95984
Tssr99551 10 120175766 to 120175775 9 - TSS region transcription start site region 99551
Gm40781 10 120190723 to 120194736 4013 + lncRNA gene predicted gene, 40781
Tssr99552 10 120193340 to 120193353 13 - TSS region transcription start site region 99552
Tssr99553 10 120193368 to 120193379 11 - TSS region transcription start site region 99553
Tssr99554 10 120193380 to 120193396 16 - TSS region transcription start site region 99554
Tssr99555 10 120193420 to 120193436 16 - TSS region transcription start site region 99555
Tssr99556 10 120193780 to 120193803 23 - TSS region transcription start site region 99556
Tssr99557 10 120198644 to 120198665 21 - TSS region transcription start site region 99557
Cpgi2260 10 120201087 to 120202106 1019 CpG island CpG island 2260
Tssr99558 10 120201090 to 120201109 19 - TSS region transcription start site region 99558
Tssr99559 10 120201196 to 120201233 37 - TSS region transcription start site region 99559
Tssr99560 10 120201413 to 120201426 13 - TSS region transcription start site region 99560
Tssr99561 10 120201464 to 120201483 19 - TSS region transcription start site region 99561
Tssr99562 10 120201499 to 120201554 55 - TSS region transcription start site region 99562
Tssr99563 10 120201558 to 120201575 17 - TSS region transcription start site region 99563
Tssr95985 10 120201586 to 120201660 74 + TSS region transcription start site region 95985
Gm38500 10 120201754 to 120203647 1893 + lncRNA gene predicted gene, 38500
Cpgi2261 10 120208615 to 120209314 699 CpG island CpG island 2261
Tssr95986 10 120208739 to 120208781 42 + TSS region transcription start site region 95986
Tssr95987 10 120208784 to 120208801 17 + TSS region transcription start site region 95987
Tssr95988 10 120208803 to 120208808 5 + TSS region transcription start site region 95988
Tssr95989 10 120208814 to 120208842 28 + TSS region transcription start site region 95989
Tmbim4 10 120208826 to 120224897 16071 + protein coding gene transmembrane BAX inhibitor motif containing 4
Tssr95990 10 120213007 to 120213026 19 + TSS region transcription start site region 95990
Gm40782 10 120222130 to 120223529 1399 + lncRNA gene predicted gene, 40782
Cpgi2262 10 120226931 to 120227810 879 CpG island CpG island 2262
Tssr95991 10 120227030 to 120227081 51 + TSS region transcription start site region 95991
Llph 10 120227060 to 120232071 5011 + protein coding gene LLP homolog, long-term synaptic facilitation (Aplysia)
Tssr95992 10 120227109 to 120227148 39 + TSS region transcription start site region 95992
Tssr95993 10 120227298 to 120227330 32 + TSS region transcription start site region 95993
Tssr3375 10 120227879 to 120227886 7 + TSS region transcription start site region 3375
Tssr95994 10 120230359 to 120230363 4 + TSS region transcription start site region 95994
Gm48115 10 120281240 to 120282199 959 + unclassified gene predicted gene, 48115
Gm48118 10 120287078 to 120287272 194 - pseudogene predicted gene, 48118
Cpgi2263 10 120303942 to 120304336 394 CpG island CpG island 2263
Gm38141 10 120310278 to 120312812 2534 + unclassified gene predicted gene, 38141
Tssr95995 10 120317040 to 120317053 13 + TSS region transcription start site region 95995
Cpgi2264 10 120328081 to 120328264 183 CpG island CpG island 2264
D10Hgu1 10 120359688 to 120359850 162 DNA segment DNA segment, Chr 10, Human Genetics Unit 1
Hmga2 10 120361275 to 120476469 115194 - protein coding gene high mobility group AT-hook 2
Tssr99564 10 120362666 to 120362669 3 - TSS region transcription start site region 99564
Tssr99565 10 120363732 to 120363745 13 - TSS region transcription start site region 99565
Tssr95996 10 120364134 to 120364176 42 + TSS region transcription start site region 95996
1700006J14Rik 10 120364157 to 120384336 20179 + antisense lncRNA gene RIKEN cDNA 1700006J14 gene
Gm40783 10 120365902 to 120368706 2804 + lncRNA gene predicted gene, 40783
Tssr99566 10 120370198 to 120370201 3 - TSS region transcription start site region 99566
Tssr95997 10 120380716 to 120380718 2 + TSS region transcription start site region 95997
Tssr95998 10 120388609 to 120388628 19 + TSS region transcription start site region 95998
9230105E05Rik 10 120389523 to 120392793 3270 + antisense lncRNA gene RIKEN cDNA 9230105E05 gene
Gluq3 10 120407822 to 125680038 5272216 QTL blood glucose QTL 3
Obrq10 10 120407822 to 120407822 0 QTL obesity resistance QTL 10
Pcholq2 10 120407822 to 125680038 5272216 QTL plasma cholesterol QTL 2
Tssr99567 10 120408322 to 120408327 5 - TSS region transcription start site region 99567
Cpgi2265 10 120414643 to 120414898 255 CpG island CpG island 2265
Cpgi2266 10 120428568 to 120429216 648 CpG island CpG island 2266
Mir763 10 120447991 to 120448110 119 - miRNA gene microRNA 763
Tssr95999 10 120461998 to 120462007 9 + TSS region transcription start site region 95999
Tssr96000 10 120462012 to 120462023 11 + TSS region transcription start site region 96000
Tssr3376 10 120462895 to 120462904 9 - TSS region transcription start site region 3376
Cpgi2267 10 120474990 to 120477784 2794 CpG island CpG island 2267
Tssr99568 10 120476210 to 120476221 11 - TSS region transcription start site region 99568
Tssr99569 10 120476222 to 120476242 20 - TSS region transcription start site region 99569
Tssr99570 10 120476245 to 120476246 1 - TSS region transcription start site region 99570
Tssr99571 10 120476254 to 120476310 56 - TSS region transcription start site region 99571
Tssr99572 10 120476311 to 120476320 9 - TSS region transcription start site region 99572
Tssr99573 10 120476472 to 120476483 11 - TSS region transcription start site region 99573
Tssr99574 10 120476490 to 120476527 37 - TSS region transcription start site region 99574
Tssr99575 10 120476710 to 120476723 13 - TSS region transcription start site region 99575
Tssr99576 10 120476736 to 120476764 28 - TSS region transcription start site region 99576
Tssr99577 10 120476783 to 120476813 30 - TSS region transcription start site region 99577
Tssr99578 10 120476898 to 120476916 18 - TSS region transcription start site region 99578
Tssr99579 10 120476918 to 120476936 18 - TSS region transcription start site region 99579
Tssr99580 10 120476945 to 120477022 77 - TSS region transcription start site region 99580
Gm34952 10 120528444 to 120538045 9601 + lncRNA gene predicted gene, 34952
Cpgi2268 10 120552375 to 120553386 1011 CpG island CpG island 2268
Cpgi2269 10 120565012 to 120565194 182 CpG island CpG island 2269
Gm24298 10 120605537 to 120605596 59 + snoRNA gene predicted gene, 24298
Tssr96001 10 120616907 to 120616911 4 + TSS region transcription start site region 96001
Tssr99581 10 120624287 to 120624320 33 - TSS region transcription start site region 99581
Tssr96002 10 120625650 to 120625672 22 + TSS region transcription start site region 96002
Tssr3377 10 120625704 to 120625709 5 - TSS region transcription start site region 3377
Tssr99582 10 120628153 to 120628169 16 - TSS region transcription start site region 99582
4930471E19Rik 10 120632672 to 120699203 66531 - lincRNA gene RIKEN cDNA 4930471E19 gene
Tssr96003 10 120634863 to 120634872 9 + TSS region transcription start site region 96003
Tssr99583 10 120636102 to 120636107 5 - TSS region transcription start site region 99583
Tssr3378 10 120653362 to 120653374 12 - TSS region transcription start site region 3378
Gm38289 10 120663252 to 120667017 3765 - unclassified gene predicted gene, 38289
Tssr99584 10 120686244 to 120686253 9 - TSS region transcription start site region 99584
Gm35062 10 120688412 to 120695179 6767 + lncRNA gene predicted gene, 35062
Cpgi2270 10 120688415 to 120688797 382 CpG island CpG island 2270
Gm35130 10 120717571 to 120719030 1459 - lncRNA gene predicted gene, 35130
Tssr96004 10 120729688 to 120729695 7 + TSS region transcription start site region 96004
Gm37505 10 120731815 to 120732855 1040 + unclassified gene predicted gene, 37505
Gm10743 10 120745976 to 120748333 2357 - unclassified gene predicted gene 10743
Gm35182 10 120751662 to 120752335 673 - lncRNA gene predicted gene, 35182
Gm48202 10 120760821 to 120766028 5207 - lincRNA gene predicted gene, 48202
4921513I03Rik 10 120765732 to 120778886 13154 + lincRNA gene RIKEN cDNA 4921513I03 gene
Tssr96005 10 120775980 to 120775982 2 + TSS region transcription start site region 96005
Msrb3 10 120781096 to 120899101 118005 - protein coding gene methionine sulfoxide reductase B3
Tssr99585 10 120782015 to 120782043 28 - TSS region transcription start site region 99585
Tssr99586 10 120782047 to 120782065 18 - TSS region transcription start site region 99586
Tssr99587 10 120782332 to 120782344 12 - TSS region transcription start site region 99587