Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:117566398-118717441

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164 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ipng2 10 105252393 to 118661448 13409055 QTL imprinted postnatal growth 2
Hylaq3 10 111732321 to 118150744 6418423 QTL Hyperlocomotor activity related QTL 3
Gm9004 10 117588117 to 117588872 755 - pseudogene predicted gene 9004
Cpgi2233 10 117594057 to 117594318 261 CpG island CpG island 2233
Kifc5c-ps 10 117594353 to 117595882 1529 + pseudogene kinesin family member C5C, pseudogene
Gm32319 10 117604027 to 117608259 4232 - lncRNA gene predicted gene, 32319
Cpgi2234 10 117608228 to 117608514 286 CpG island CpG island 2234
Gm32365 10 117614574 to 117616661 2087 + lincRNA gene predicted gene, 32365
Cpgi2235 10 117628869 to 117630026 1157 CpG island CpG island 2235
Tssr95919 10 117629493 to 117629506 13 + TSS region transcription start site region 95919
Cpm 10 117629500 to 117687352 57852 + protein coding gene carboxypeptidase M
Cpgi2236 10 117639985 to 117640201 216 CpG island CpG island 2236
Gm25709 10 117662282 to 117662388 106 - snRNA gene predicted gene, 25709
Mdm2 10 117688875 to 117710758 21883 - protein coding gene transformed mouse 3T3 cell double minute 2
Tssr99449 10 117689865 to 117689880 15 - TSS region transcription start site region 99449
Tssr99450 10 117689881 to 117689901 20 - TSS region transcription start site region 99450
Tssr99451 10 117690221 to 117690232 11 - TSS region transcription start site region 99451
Tssr99452 10 117690427 to 117690439 12 - TSS region transcription start site region 99452
Tssr99453 10 117690499 to 117690517 18 - TSS region transcription start site region 99453
Tssr99454 10 117690535 to 117690555 20 - TSS region transcription start site region 99454
Tssr99455 10 117693135 to 117693144 9 - TSS region transcription start site region 99455
Tssr99456 10 117693158 to 117693177 19 - TSS region transcription start site region 99456
Tssr99457 10 117693274 to 117693281 7 - TSS region transcription start site region 99457
Tssr95920 10 117693761 to 117693774 13 + TSS region transcription start site region 95920
Tssr99458 10 117695417 to 117695445 28 - TSS region transcription start site region 99458
Tssr99459 10 117699035 to 117699041 6 - TSS region transcription start site region 99459
Tssr99460 10 117701616 to 117701625 9 - TSS region transcription start site region 99460
Cpgi2237 10 117709852 to 117711108 1256 CpG island CpG island 2237
Tssr99461 10 117710015 to 117710032 17 - TSS region transcription start site region 99461
Tssr99462 10 117710073 to 117710087 14 - TSS region transcription start site region 99462
Tssr95921 10 117710074 to 117710085 11 + TSS region transcription start site region 95921
Tssr99463 10 117710088 to 117710099 11 - TSS region transcription start site region 99463
Tssr99464 10 117710103 to 117710128 25 - TSS region transcription start site region 99464
Tssr95922 10 117710153 to 117710192 39 + TSS region transcription start site region 95922
Tssr99465 10 117710193 to 117710205 12 - TSS region transcription start site region 99465
Tssr99466 10 117710228 to 117710303 75 - TSS region transcription start site region 99466
Tssr99467 10 117710644 to 117710661 17 - TSS region transcription start site region 99467
Tssr99468 10 117710674 to 117710736 62 - TSS region transcription start site region 99468
Tssr99469 10 117710745 to 117710773 28 - TSS region transcription start site region 99469
Tssr95923 10 117710887 to 117710947 60 + TSS region transcription start site region 95923
Tssr95924 10 117711714 to 117711756 42 + TSS region transcription start site region 95924
Tssr99470 10 117715238 to 117715258 20 - TSS region transcription start site region 99470
Tssr95925 10 117717900 to 117717949 49 + TSS region transcription start site region 95925
Tssr95926 10 117719221 to 117719237 16 + TSS region transcription start site region 95926
Tssr95927 10 117719338 to 117719342 4 + TSS region transcription start site region 95927
Tssr95928 10 117721712 to 117721733 21 + TSS region transcription start site region 95928
Slc35e3 10 117733678 to 117746358 12680 - protein coding gene solute carrier family 35, member E3
Cpgi2238 10 117745593 to 117745785 192 CpG island CpG island 2238
Cpgi2239 10 117746296 to 117746655 359 CpG island CpG island 2239
Tssr99471 10 117746331 to 117746350 19 - TSS region transcription start site region 99471
Tssr99472 10 117746356 to 117746418 62 - TSS region transcription start site region 99472
Nup107 10 117750621 to 117792705 42084 - protein coding gene nucleoporin 107
Tssr99473 10 117779222 to 117779260 38 - TSS region transcription start site region 99473
Cpgi2240 10 117792250 to 117793085 835 CpG island CpG island 2240
Tssr99474 10 117792638 to 117792658 20 - TSS region transcription start site region 99474
Tssr99475 10 117792663 to 117792717 54 - TSS region transcription start site region 99475
Tssr95929 10 117792955 to 117793004 49 + TSS region transcription start site region 95929
Gm47899 10 117798459 to 117798765 306 - pseudogene predicted gene, 47899
Rap1b 10 117814597 to 117845974 31377 - protein coding gene RAS related protein 1b
Tssr99476 10 117814910 to 117814924 14 - TSS region transcription start site region 99476
Tssr99477 10 117815063 to 117815076 13 - TSS region transcription start site region 99477
Tssr99478 10 117815291 to 117815304 13 - TSS region transcription start site region 99478
Tssr99479 10 117815565 to 117815581 16 - TSS region transcription start site region 99479
Tssr99480 10 117815667 to 117815685 18 - TSS region transcription start site region 99480
Tssr99481 10 117815687 to 117815698 11 - TSS region transcription start site region 99481
Tssr99482 10 117815978 to 117815985 7 - TSS region transcription start site region 99482
Tssr99483 10 117817371 to 117817422 51 - TSS region transcription start site region 99483
Tssr99484 10 117818576 to 117818593 17 - TSS region transcription start site region 99484
Tssr99485 10 117820529 to 117820566 37 - TSS region transcription start site region 99485
Tssr99486 10 117835328 to 117835335 7 - TSS region transcription start site region 99486
Tssr99487 10 117844314 to 117844322 8 - TSS region transcription start site region 99487
Tssr99488 10 117845087 to 117845094 7 - TSS region transcription start site region 99488
Cpgi2241 10 117845153 to 117846570 1417 CpG island CpG island 2241
Tssr99489 10 117845938 to 117845949 11 - TSS region transcription start site region 99489
Tssr99490 10 117845959 to 117846009 50 - TSS region transcription start site region 99490
Tssr95930 10 117846120 to 117846170 50 + TSS region transcription start site region 95930
Tssr95931 10 117861136 to 117861163 27 + TSS region transcription start site region 95931
Gm40773 10 117864670 to 117868075 3405 + lincRNA gene predicted gene, 40773
Gm32552 10 117866184 to 117866720 536 - lincRNA gene predicted gene, 32552
Gm32605 10 117876559 to 117911460 34901 + lncRNA gene predicted gene, 32605
Cpgi2242 10 117905759 to 117906005 246 CpG island CpG island 2242
Tssr99491 10 117910511 to 117910516 5 - TSS region transcription start site region 99491
4933411E08Rik 10 117925459 to 117948292 22833 + lincRNA gene RIKEN cDNA 4933411E08 gene
Cpgi2243 10 117926082 to 117926341 259 CpG island CpG island 2243
Tssr3366 10 117941207 to 117941232 25 + TSS region transcription start site region 3366
Cpgi2244 10 117952121 to 117952534 413 CpG island CpG island 2244
D10Mit304 10 117959991 to 117960091 100 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 304
Tssr99492 10 117982631 to 117982655 24 - TSS region transcription start site region 99492
Tssr95932 10 117982902 to 117982908 6 + TSS region transcription start site region 95932
Gm37852 10 118004938 to 118005287 349 + unclassified gene predicted gene, 37852
Tssr99493 10 118011950 to 118011954 4 - TSS region transcription start site region 99493
Gm32663 10 118013133 to 118053072 39939 + lncRNA gene predicted gene, 32663
Cpgi2245 10 118052331 to 118052908 577 CpG island CpG island 2245
Tssr95933 10 118052912 to 118052918 6 + TSS region transcription start site region 95933
Tssr99494 10 118082947 to 118082957 10 - TSS region transcription start site region 99494
Tssr99495 10 118083055 to 118083090 35 - TSS region transcription start site region 99495
Tssr99496 10 118097963 to 118097967 4 - TSS region transcription start site region 99496
Tssr95934 10 118098176 to 118098202 26 + TSS region transcription start site region 95934
Tssr95935 10 118098249 to 118098251 2 + TSS region transcription start site region 95935
Tssr95936 10 118098270 to 118098281 11 + TSS region transcription start site region 95936
Tssr3367 10 118101961 to 118101970 9 + TSS region transcription start site region 3367
Cpgi2246 10 118103198 to 118103489 291 CpG island CpG island 2246
Tssr99497 10 118103241 to 118103282 41 - TSS region transcription start site region 99497
Tssr3368 10 118107307 to 118107310 3 + TSS region transcription start site region 3368
Tssr95937 10 118112514 to 118112531 17 + TSS region transcription start site region 95937
5330439M10Rik 10 118112517 to 118124094 11577 + lincRNA gene RIKEN cDNA 5330439M10 gene
Cpgi2247 10 118126083 to 118126241 158 CpG island CpG island 2247
Cpgi2248 10 118141398 to 118142441 1043 CpG island CpG island 2248
Tssr95938 10 118141523 to 118141528 5 + TSS region transcription start site region 95938
Tssr95939 10 118141531 to 118141533 2 + TSS region transcription start site region 95939
Tssr95940 10 118141548 to 118141559 11 + TSS region transcription start site region 95940
Tssr95941 10 118141560 to 118141565 5 + TSS region transcription start site region 95941
Tssr99498 10 118141565 to 118141610 45 - TSS region transcription start site region 99498
Tssr95942 10 118141802 to 118141870 68 + TSS region transcription start site region 95942
Mdm1 10 118141811 to 118168997 27186 + protein coding gene transformed mouse 3T3 cell double minute 1
Tssr95943 10 118141885 to 118141898 13 + TSS region transcription start site region 95943
Tssr95944 10 118141903 to 118141912 9 + TSS region transcription start site region 95944
Tssr95945 10 118141917 to 118141928 11 + TSS region transcription start site region 95945
Estq4 10 118150611 to 118150744 133 QTL estradiol regulated response QTL 4
D10Mit180 10 118150611 to 118150744 133 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 180
Cfbw4 10 118150611 to 118150744 133 QTL cystic fibrosis body weight 4
Gn 10 118150744 to 18383585 -99767159 heritable phenotypic marker gentoo
Tssr95946 10 118156108 to 118156112 4 + TSS region transcription start site region 95946
Tssr3369 10 118156597 to 118156599 2 + TSS region transcription start site region 3369
Gm47958 10 118163985 to 118165162 1177 - antisense lncRNA gene predicted gene, 47958
Gm40775 10 118188087 to 118189210 1123 - lncRNA gene predicted gene, 40775
Tssr95947 10 118204822 to 118204827 5 + TSS region transcription start site region 95947
Il22 10 118204942 to 118210047 5105 + protein coding gene interleukin 22
Gm9585 10 118232128 to 118233531 1403 - pseudogene predicted gene 9585
Gm32717 10 118238372 to 118240780 2408 - pseudogene predicted gene, 32717
Gm9029 10 118243800 to 118246209 2409 - pseudogene predicted gene 9029
Tssr95948 10 118253140 to 118253151 11 + TSS region transcription start site region 95948
Gm9030 10 118253259 to 118255668 2409 + pseudogene predicted gene 9030
Gm32802 10 118258688 to 118261096 2408 + pseudogene predicted gene, 32802
Gm9035 10 118265972 to 118267637 1665 + pseudogene predicted gene 9035
Iltifb 10 118289629 to 118295038 5409 - protein coding gene interleukin 10-related T cell-derived inducible factor beta
Gm9040 10 118324561 to 118326969 2408 - pseudogene predicted gene 9040
Gm9044 10 118330000 to 118332408 2408 - pseudogene predicted gene 9044
Gm9045 10 118335423 to 118337831 2408 - pseudogene predicted gene 9045
Gm9046 10 118340847 to 118343255 2408 - pseudogene predicted gene 9046
Gm9048 10 118346271 to 118348679 2408 - pseudogene predicted gene 9048
Gm9049 10 118351697 to 118354105 2408 - pseudogene predicted gene 9049
D10Mit24 10 118439249 to 118439390 141 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 24
Tssr95949 10 118441044 to 118441050 6 + TSS region transcription start site region 95949
Ifng 10 118441046 to 118445892 4846 + protein coding gene interferon gamma
Gm49751 10 118441419 to 118444140 2721 + unclassified gene predicted gene, 49751
Ifngas1 10 118502035 to 118556525 54490 - antisense lncRNA gene Ifng antisense RNA 1
Tmevp3 10 118553765 to 118655063 101298 QTL Theiler's murine encephalomyelitis virus persistence 3
D10Mit74 10 118553765 to 118553963 198 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 74
Tssr99499 10 118556526 to 118556542 16 - TSS region transcription start site region 99499
Tssr99500 10 118633443 to 118633447 4 - TSS region transcription start site region 99500
Tssr99501 10 118633485 to 118633508 23 - TSS region transcription start site region 99501
Tssr95950 10 118633748 to 118633775 27 + TSS region transcription start site region 95950
D10Mit234 10 118654934 to 118655063 129 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 234
D10Mit14 10 118661259 to 118661448 189 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 14
Cfmq3 10 118661259 to 118661448 189 QTL cystic fibrosis modifier QTL 3
Im5 10 118661259 to 118661448 189 QTL immunoregulatory 5
Jckm1 10 118661259 to 120899582 2238323 QTL juvenile cystic kidney modifier 1
Cia29 10 118661448 to 85619118 -33042330 QTL collagen induced arthritis QTL 29
Cpgi2249 10 118676058 to 118676264 206 CpG island CpG island 2249
Tssr95951 10 118714436 to 118714453 17 + TSS region transcription start site region 95951
Gm33337 10 118714481 to 118715726 1245 - lincRNA gene predicted gene, 33337
Tssr99502 10 118715760 to 118715779 19 - TSS region transcription start site region 99502
Tssr95952 10 118715887 to 118715927 40 + TSS region transcription start site region 95952