Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:116932938-117562948

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155 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab3ip 10 116905780 to 116950460 44680 - protein coding gene RAB3A interacting protein
Cpgi2218 10 116949615 to 116950756 1141 CpG island CpG island 2218
Tssr99378 10 116950366 to 116950432 66 - TSS region transcription start site region 99378
Tssr99379 10 116950445 to 116950456 11 - TSS region transcription start site region 99379
Tssr95885 10 116950553 to 116950625 72 + TSS region transcription start site region 95885
4933412E12Rik 10 116950562 to 116963279 12717 + bidirectional promoter lncRNA gene RIKEN cDNA 4933412E12 gene
Tssr95886 10 116950633 to 116950647 14 + TSS region transcription start site region 95886
Gm40768 10 116953654 to 116958943 5289 - lncRNA gene predicted gene, 40768
Gm10271 10 116956824 to 116972609 15785 - protein coding gene predicted gene 10271
Tssr95887 10 116962428 to 116962432 4 + TSS region transcription start site region 95887
Tssr95888 10 116962444 to 116962460 16 + TSS region transcription start site region 95888
Tssr95889 10 116962462 to 116962467 5 + TSS region transcription start site region 95889
Tssr95890 10 116964734 to 116964745 11 + TSS region transcription start site region 95890
D630029K05Rik 10 116964740 to 116969108 4368 + lincRNA gene RIKEN cDNA D630029K05 gene
Tssr95891 10 116964747 to 116964760 13 + TSS region transcription start site region 95891
Tssr95892 10 116964779 to 116964786 7 + TSS region transcription start site region 95892
Tssr95893 10 116964832 to 116964842 10 + TSS region transcription start site region 95893
Tssr95894 10 116966221 to 116966246 25 + TSS region transcription start site region 95894
Tssr95895 10 116966286 to 116966295 9 + TSS region transcription start site region 95895
Tssr95896 10 116966363 to 116966367 4 + TSS region transcription start site region 95896
Gm5781 10 116972766 to 116973208 442 - pseudogene predicted gene 5781
Tssr99380 10 116973221 to 116973231 10 - TSS region transcription start site region 99380
Gm46182 10 116983666 to 116986763 3097 - lncRNA gene predicted gene, 46182
Best3 10 116986314 to 117025040 38726 + protein coding gene bestrophin 3
Tssr95897 10 116986622 to 116986635 13 + TSS region transcription start site region 95897
Tssr95898 10 116986651 to 116986695 44 + TSS region transcription start site region 95898
Cpgi2219 10 116993006 to 116993358 352 CpG island CpG island 2219
Cpgi2220 10 117004213 to 117004540 327 CpG island CpG island 2220
Cpgi2221 10 117023784 to 117024447 663 CpG island CpG island 2221
Gm10747 10 117043746 to 117045101 1355 + lincRNA gene predicted gene 10747
Lrrc10 10 117045341 to 117046768 1427 + protein coding gene leucine rich repeat containing 10
Tssr95899 10 117045346 to 117045363 17 + TSS region transcription start site region 95899
Cpgi2222 10 117045404 to 117046111 707 CpG island CpG island 2222
D830039D19Rik 10 117047194 to 117049746 2552 unclassified gene RIKEN cDNA D830039D19 gene
Cct2 10 117051001 to 117063814 12813 - protein coding gene chaperonin containing Tcp1, subunit 2 (beta)
Tssr99381 10 117063033 to 117063058 25 - TSS region transcription start site region 99381
Cpgi2223 10 117063215 to 117064038 823 CpG island CpG island 2223
Tssr99382 10 117063335 to 117063366 31 - TSS region transcription start site region 99382
Tssr99383 10 117063741 to 117063752 11 - TSS region transcription start site region 99383
Tssr99384 10 117063764 to 117063802 38 - TSS region transcription start site region 99384
Frs2 10 117070127 to 117148474 78347 - protein coding gene fibroblast growth factor receptor substrate 2
Tssr99385 10 117071789 to 117071806 17 - TSS region transcription start site region 99385
Tssr99386 10 117071970 to 117071984 14 - TSS region transcription start site region 99386
Tssr99387 10 117072087 to 117072088 1 - TSS region transcription start site region 99387
Tssr99388 10 117087127 to 117087130 3 - TSS region transcription start site region 99388
E030003N13Rik 10 117092662 to 117095037 2375 unclassified gene RIKEN cDNA E030003N13 gene
Tssr99389 10 117116488 to 117116492 4 - TSS region transcription start site region 99389
Cpgi2224 10 117147769 to 117148951 1182 CpG island CpG island 2224
Tssr99390 10 117148481 to 117148510 29 - TSS region transcription start site region 99390
Tssr99391 10 117148511 to 117148546 35 - TSS region transcription start site region 99391
Cpgi2225 10 117150040 to 117150300 260 CpG island CpG island 2225
Tssr99392 10 117150400 to 117150413 13 - TSS region transcription start site region 99392
4930423D24Rik 10 117177625 to 117181110 3485 + lincRNA gene RIKEN cDNA 4930423D24 gene
Gm40769 10 117179111 to 117180878 1767 - lncRNA gene predicted gene, 40769
Gm26311 10 117183335 to 117183411 76 - snoRNA gene predicted gene, 26311
Cpgi2226 10 117186887 to 117187135 248 CpG island CpG island 2226
4930528J18Rik 10 117189847 to 117190266 419 unclassified gene RIKEN cDNA 4930528J18 gene
Tssr99393 10 117190261 to 117190278 17 - TSS region transcription start site region 99393
Yeats4 10 117215221 to 117224507 9286 - protein coding gene YEATS domain containing 4
Tssr99394 10 117215843 to 117215852 9 - TSS region transcription start site region 99394
Tssr99395 10 117217336 to 117217362 26 - TSS region transcription start site region 99395
Cpgi2227 10 117223847 to 117224804 957 CpG island CpG island 2227
Tssr95900 10 117224246 to 117224268 22 + TSS region transcription start site region 95900
Tssr99396 10 117224480 to 117224499 19 - TSS region transcription start site region 99396
Gm31963 10 117224486 to 117250831 26345 + lncRNA gene predicted gene, 31963
Gm48772 10 117224589 to 117224952 363 + bidirectional promoter lncRNA gene predicted gene, 48772
Cpgi2228 10 117229930 to 117230186 256 CpG island CpG island 2228
9530003J23Rik 10 117233753 to 117238681 4928 - protein coding gene RIKEN cDNA 9530003J23 gene
Tssr99397 10 117234021 to 117234027 6 - TSS region transcription start site region 99397
Tssr99398 10 117234044 to 117234051 7 - TSS region transcription start site region 99398
Tssr99399 10 117234055 to 117234058 3 - TSS region transcription start site region 99399
Tssr99400 10 117234201 to 117234249 48 - TSS region transcription start site region 99400
Tssr99401 10 117234302 to 117234310 8 - TSS region transcription start site region 99401
Tssr99402 10 117234422 to 117234431 9 - TSS region transcription start site region 99402
Tssr99403 10 117238540 to 117238559 19 - TSS region transcription start site region 99403
Tssr99404 10 117238573 to 117238582 9 - TSS region transcription start site region 99404
Tssr99405 10 117238589 to 117238614 25 - TSS region transcription start site region 99405
Tssr99406 10 117238630 to 117238641 11 - TSS region transcription start site region 99406
Tssr99407 10 117238647 to 117238654 7 - TSS region transcription start site region 99407
Tssr99408 10 117238665 to 117238676 11 - TSS region transcription start site region 99408
Tssr99409 10 117238865 to 117238897 32 - TSS region transcription start site region 99409
Tssr95901 10 117247938 to 117247948 10 + TSS region transcription start site region 95901
Tssr95902 10 117247981 to 117247992 11 + TSS region transcription start site region 95902
Gm10936 10 117248021 to 117250727 2706 + pseudogene predicted gene 10936
Tssr95903 10 117268259 to 117268262 3 + TSS region transcription start site region 95903
D10Mit296 10 117272444 to 117272568 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 296
Tssr95904 10 117277329 to 117277340 11 + TSS region transcription start site region 95904
Tssr95905 10 117277385 to 117277408 23 + TSS region transcription start site region 95905
Tssr99410 10 117277430 to 117277452 22 - TSS region transcription start site region 99410
Tssr95906 10 117277447 to 117277462 15 + TSS region transcription start site region 95906
Tssr95907 10 117277464 to 117277495 31 + TSS region transcription start site region 95907
Tssr99411 10 117277482 to 117277530 48 - TSS region transcription start site region 99411
Lyz2 10 117277541 to 117282272 4731 - protein coding gene lysozyme 2
Tssr99412 10 117277603 to 117277636 33 - TSS region transcription start site region 99412
Tssr95908 10 117277640 to 117277676 36 + TSS region transcription start site region 95908
Tssr99413 10 117277664 to 117277689 25 - TSS region transcription start site region 99413
Tssr95909 10 117277716 to 117277766 50 + TSS region transcription start site region 95909
Tssr99414 10 117277753 to 117277803 50 - TSS region transcription start site region 99414
Tssr99415 10 117277836 to 117277863 27 - TSS region transcription start site region 99415
Tssr95910 10 117277851 to 117277912 61 + TSS region transcription start site region 95910
Tssr99416 10 117277886 to 117277930 44 - TSS region transcription start site region 99416
Tssr95911 10 117277981 to 117278020 39 + TSS region transcription start site region 95911
Tssr99417 10 117277998 to 117278005 7 - TSS region transcription start site region 99417
Tssr99418 10 117278012 to 117278024 12 - TSS region transcription start site region 99418
Tssr99419 10 117278027 to 117278062 35 - TSS region transcription start site region 99419
Tssr95912 10 117278076 to 117278091 15 + TSS region transcription start site region 95912
Tssr99420 10 117278099 to 117278120 21 - TSS region transcription start site region 99420
Tssr95913 10 117278136 to 117278168 32 + TSS region transcription start site region 95913
Tssr99421 10 117278173 to 117278196 23 - TSS region transcription start site region 99421
Tssr99422 10 117278905 to 117278918 13 - TSS region transcription start site region 99422
Tssr95914 10 117280634 to 117280667 33 + TSS region transcription start site region 95914
Tssr99423 10 117280667 to 117280704 37 - TSS region transcription start site region 99423
Tssr95915 10 117280712 to 117280732 20 + TSS region transcription start site region 95915
Tssr99424 10 117280735 to 117280766 31 - TSS region transcription start site region 99424
Tssr99425 10 117280780 to 117280815 35 - TSS region transcription start site region 99425
Tssr99426 10 117281002 to 117281005 3 - TSS region transcription start site region 99426
Tssr99427 10 117282243 to 117282257 14 - TSS region transcription start site region 99427
Tssr99428 10 117282262 to 117282280 18 - TSS region transcription start site region 99428
Tssr99429 10 117282322 to 117282327 5 - TSS region transcription start site region 99429
Tssr99430 10 117282329 to 117282367 38 - TSS region transcription start site region 99430
Tssr99431 10 117282385 to 117282393 8 - TSS region transcription start site region 99431
Tssr99432 10 117282432 to 117282441 9 - TSS region transcription start site region 99432
Tssr95916 10 117285199 to 117285229 30 + TSS region transcription start site region 95916
Tssr95917 10 117285284 to 117285302 18 + TSS region transcription start site region 95917
Lyz1 10 117287797 to 117292868 5071 - protein coding gene lysozyme 1
Tssr3364 10 117287848 to 117287881 33 + TSS region transcription start site region 3364
Tssr99433 10 117288410 to 117288420 10 - TSS region transcription start site region 99433
Tssr99434 10 117288492 to 117288526 34 - TSS region transcription start site region 99434
Tssr99435 10 117292863 to 117292870 7 - TSS region transcription start site region 99435
D10Mit179 10 117295828 to 117295977 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 179
Tssr99436 10 117339747 to 117339750 3 - TSS region transcription start site region 99436
Cpsf6 10 117344667 to 117376990 32323 - protein coding gene cleavage and polyadenylation specific factor 6
Tssr99437 10 117348241 to 117348246 5 - TSS region transcription start site region 99437
Tssr99438 10 117350882 to 117350887 5 - TSS region transcription start site region 99438
Tssr99439 10 117357115 to 117357118 3 - TSS region transcription start site region 99439
Tssr99440 10 117360961 to 117360972 11 - TSS region transcription start site region 99440
Tssr99441 10 117361046 to 117361063 17 - TSS region transcription start site region 99441
Tssr3365 10 117361076 to 117361115 39 - TSS region transcription start site region 3365
Tssr99442 10 117361177 to 117361188 11 - TSS region transcription start site region 99442
Cpgi2229 10 117375778 to 117377275 1497 CpG island CpG island 2229
Tssr99443 10 117376906 to 117376917 11 - TSS region transcription start site region 99443
Tssr99444 10 117376922 to 117376954 32 - TSS region transcription start site region 99444
Tssr99445 10 117376955 to 117376978 23 - TSS region transcription start site region 99445
Tssr99446 10 117380038 to 117380051 13 - TSS region transcription start site region 99446
Cpgi2230 10 117389792 to 117390219 427 CpG island CpG island 2230
Gm48903 10 117390022 to 117398587 8565 + lincRNA gene predicted gene, 48903
Gm40770 10 117408872 to 117413904 5032 - lincRNA gene predicted gene, 40770
Tssr99447 10 117411244 to 117411265 21 - TSS region transcription start site region 99447
Tssr99448 10 117413906 to 117413917 11 - TSS region transcription start site region 99448
Cpgi2231 10 117418734 to 117419080 346 CpG island CpG island 2231
Gm9002 10 117429618 to 117430116 498 + pseudogene predicted gene 9002
Cpgi2232 10 117435345 to 117435789 444 CpG island CpG island 2232
Gm32141 10 117446017 to 117447487 1470 - lincRNA gene predicted gene, 32141
Tssr95918 10 117531038 to 117531045 7 + TSS region transcription start site region 95918
Gm32235 10 117559133 to 117560228 1095 + lincRNA gene predicted gene, 32235