Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:116912662-117275037

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab3ip 10 116905780 to 116950460 44680 - protein coding gene RAB3A interacting protein
Tssr99373 10 116913872 to 116913901 29 - TSS region transcription start site region 99373
Tssr95878 10 116914001 to 116914020 19 + TSS region transcription start site region 95878
Tssr95879 10 116914102 to 116914115 13 + TSS region transcription start site region 95879
Tssr95880 10 116914118 to 116914128 10 + TSS region transcription start site region 95880
Tssr95881 10 116914148 to 116914181 33 + TSS region transcription start site region 95881
Tssr95882 10 116914187 to 116914198 11 + TSS region transcription start site region 95882
Tssr95883 10 116914280 to 116914303 23 + TSS region transcription start site region 95883
Tssr95884 10 116914358 to 116914398 40 + TSS region transcription start site region 95884
Tssr99374 10 116918925 to 116918931 6 - TSS region transcription start site region 99374
Tssr99375 10 116919639 to 116919658 19 - TSS region transcription start site region 99375
Tssr99376 10 116926079 to 116926102 23 - TSS region transcription start site region 99376
Tssr99377 10 116931851 to 116931867 16 - TSS region transcription start site region 99377
Cpgi2218 10 116949615 to 116950756 1141 CpG island CpG island 2218
Tssr99378 10 116950366 to 116950432 66 - TSS region transcription start site region 99378
Tssr99379 10 116950445 to 116950456 11 - TSS region transcription start site region 99379
Tssr95885 10 116950553 to 116950625 72 + TSS region transcription start site region 95885
4933412E12Rik 10 116950562 to 116963279 12717 + bidirectional promoter lncRNA gene RIKEN cDNA 4933412E12 gene
Tssr95886 10 116950633 to 116950647 14 + TSS region transcription start site region 95886
Gm40768 10 116953654 to 116958943 5289 - lncRNA gene predicted gene, 40768
Gm10271 10 116956824 to 116972609 15785 - protein coding gene predicted gene 10271
Tssr95887 10 116962428 to 116962432 4 + TSS region transcription start site region 95887
Tssr95888 10 116962444 to 116962460 16 + TSS region transcription start site region 95888
Tssr95889 10 116962462 to 116962467 5 + TSS region transcription start site region 95889
Tssr95890 10 116964734 to 116964745 11 + TSS region transcription start site region 95890
D630029K05Rik 10 116964740 to 116969108 4368 + lincRNA gene RIKEN cDNA D630029K05 gene
Tssr95891 10 116964747 to 116964760 13 + TSS region transcription start site region 95891
Tssr95892 10 116964779 to 116964786 7 + TSS region transcription start site region 95892
Tssr95893 10 116964832 to 116964842 10 + TSS region transcription start site region 95893
Tssr95894 10 116966221 to 116966246 25 + TSS region transcription start site region 95894
Tssr95895 10 116966286 to 116966295 9 + TSS region transcription start site region 95895
Tssr95896 10 116966363 to 116966367 4 + TSS region transcription start site region 95896
Gm5781 10 116972766 to 116973208 442 - pseudogene predicted gene 5781
Tssr99380 10 116973221 to 116973231 10 - TSS region transcription start site region 99380
Gm46182 10 116983666 to 116986763 3097 - lncRNA gene predicted gene, 46182
Best3 10 116986314 to 117025040 38726 + protein coding gene bestrophin 3
Tssr95897 10 116986622 to 116986635 13 + TSS region transcription start site region 95897
Tssr95898 10 116986651 to 116986695 44 + TSS region transcription start site region 95898
Cpgi2219 10 116993006 to 116993358 352 CpG island CpG island 2219
Cpgi2220 10 117004213 to 117004540 327 CpG island CpG island 2220
Cpgi2221 10 117023784 to 117024447 663 CpG island CpG island 2221
Gm10747 10 117043746 to 117045101 1355 + lincRNA gene predicted gene 10747
Lrrc10 10 117045341 to 117046768 1427 + protein coding gene leucine rich repeat containing 10
Tssr95899 10 117045346 to 117045363 17 + TSS region transcription start site region 95899
Cpgi2222 10 117045404 to 117046111 707 CpG island CpG island 2222
D830039D19Rik 10 117047194 to 117049746 2552 unclassified gene RIKEN cDNA D830039D19 gene
Cct2 10 117051001 to 117063814 12813 - protein coding gene chaperonin containing Tcp1, subunit 2 (beta)
Tssr99381 10 117063033 to 117063058 25 - TSS region transcription start site region 99381
Cpgi2223 10 117063215 to 117064038 823 CpG island CpG island 2223
Tssr99382 10 117063335 to 117063366 31 - TSS region transcription start site region 99382
Tssr99383 10 117063741 to 117063752 11 - TSS region transcription start site region 99383
Tssr99384 10 117063764 to 117063802 38 - TSS region transcription start site region 99384
Frs2 10 117070127 to 117148474 78347 - protein coding gene fibroblast growth factor receptor substrate 2
Tssr99385 10 117071789 to 117071806 17 - TSS region transcription start site region 99385
Tssr99386 10 117071970 to 117071984 14 - TSS region transcription start site region 99386
Tssr99387 10 117072087 to 117072088 1 - TSS region transcription start site region 99387
Tssr99388 10 117087127 to 117087130 3 - TSS region transcription start site region 99388
E030003N13Rik 10 117092662 to 117095037 2375 unclassified gene RIKEN cDNA E030003N13 gene
Tssr99389 10 117116488 to 117116492 4 - TSS region transcription start site region 99389
Cpgi2224 10 117147769 to 117148951 1182 CpG island CpG island 2224
Tssr99390 10 117148481 to 117148510 29 - TSS region transcription start site region 99390
Tssr99391 10 117148511 to 117148546 35 - TSS region transcription start site region 99391
Cpgi2225 10 117150040 to 117150300 260 CpG island CpG island 2225
Tssr99392 10 117150400 to 117150413 13 - TSS region transcription start site region 99392
4930423D24Rik 10 117177625 to 117181110 3485 + lincRNA gene RIKEN cDNA 4930423D24 gene
Gm40769 10 117179111 to 117180878 1767 - lncRNA gene predicted gene, 40769
Gm26311 10 117183335 to 117183411 76 - snoRNA gene predicted gene, 26311
Cpgi2226 10 117186887 to 117187135 248 CpG island CpG island 2226
4930528J18Rik 10 117189847 to 117190266 419 unclassified gene RIKEN cDNA 4930528J18 gene
Tssr99393 10 117190261 to 117190278 17 - TSS region transcription start site region 99393
Yeats4 10 117215221 to 117224507 9286 - protein coding gene YEATS domain containing 4
Tssr99394 10 117215843 to 117215852 9 - TSS region transcription start site region 99394
Tssr99395 10 117217336 to 117217362 26 - TSS region transcription start site region 99395
Cpgi2227 10 117223847 to 117224804 957 CpG island CpG island 2227
Tssr95900 10 117224246 to 117224268 22 + TSS region transcription start site region 95900
Tssr99396 10 117224480 to 117224499 19 - TSS region transcription start site region 99396
Gm31963 10 117224486 to 117250831 26345 + lncRNA gene predicted gene, 31963
Gm48772 10 117224589 to 117224952 363 + bidirectional promoter lncRNA gene predicted gene, 48772
Cpgi2228 10 117229930 to 117230186 256 CpG island CpG island 2228
9530003J23Rik 10 117233753 to 117238681 4928 - protein coding gene RIKEN cDNA 9530003J23 gene
Tssr99397 10 117234021 to 117234027 6 - TSS region transcription start site region 99397
Tssr99398 10 117234044 to 117234051 7 - TSS region transcription start site region 99398
Tssr99399 10 117234055 to 117234058 3 - TSS region transcription start site region 99399
Tssr99400 10 117234201 to 117234249 48 - TSS region transcription start site region 99400
Tssr99401 10 117234302 to 117234310 8 - TSS region transcription start site region 99401
Tssr99402 10 117234422 to 117234431 9 - TSS region transcription start site region 99402
Tssr99403 10 117238540 to 117238559 19 - TSS region transcription start site region 99403
Tssr99404 10 117238573 to 117238582 9 - TSS region transcription start site region 99404
Tssr99405 10 117238589 to 117238614 25 - TSS region transcription start site region 99405
Tssr99406 10 117238630 to 117238641 11 - TSS region transcription start site region 99406
Tssr99407 10 117238647 to 117238654 7 - TSS region transcription start site region 99407
Tssr99408 10 117238665 to 117238676 11 - TSS region transcription start site region 99408
Tssr99409 10 117238865 to 117238897 32 - TSS region transcription start site region 99409
Tssr95901 10 117247938 to 117247948 10 + TSS region transcription start site region 95901
Tssr95902 10 117247981 to 117247992 11 + TSS region transcription start site region 95902
Gm10936 10 117248021 to 117250727 2706 + pseudogene predicted gene 10936
Tssr95903 10 117268259 to 117268262 3 + TSS region transcription start site region 95903
D10Mit296 10 117272444 to 117272568 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 296