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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:116490334-117020439

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnot2 10 116485161 to 116581511 96350 - protein coding gene CCR4-NOT transcription complex, subunit 2
Gm31593 10 116507195 to 116522581 15386 + lncRNA gene predicted gene, 31593
Tssr95873 10 116509027 to 116509034 7 + TSS region transcription start site region 95873
Tssr95874 10 116509037 to 116509064 27 + TSS region transcription start site region 95874
5330438D12Rik 10 116509052 to 116583515 74463 + unclassified non-coding RNA gene RIKEN cDNA 5330438D12 gene
Tssr99355 10 116515394 to 116515397 3 - TSS region transcription start site region 99355
Tssr99356 10 116517967 to 116517971 4 - TSS region transcription start site region 99356
Tssr99357 10 116522099 to 116522103 4 - TSS region transcription start site region 99357
Gm25190 10 116531646 to 116531740 94 - miRNA gene predicted gene, 25190
Tssr99358 10 116535820 to 116535833 13 - TSS region transcription start site region 99358
Tssr99359 10 116545819 to 116545823 4 - TSS region transcription start site region 99359
Tssr99360 10 116549101 to 116549128 27 - TSS region transcription start site region 99360
Tssr99361 10 116549315 to 116549324 9 - TSS region transcription start site region 99361
Tssr99362 10 116559264 to 116559290 26 - TSS region transcription start site region 99362
Tssr99363 10 116559294 to 116559300 6 - TSS region transcription start site region 99363
Tssr99364 10 116559326 to 116559339 13 - TSS region transcription start site region 99364
Tssr99365 10 116564992 to 116565001 9 - TSS region transcription start site region 99365
Gm49344 10 116566782 to 116568031 1249 + unclassified gene predicted gene, 49344
Cpgi2217 10 116580556 to 116582299 1743 CpG island CpG island 2217
Tssr99366 10 116581478 to 116581507 29 - TSS region transcription start site region 99366
Tssr99367 10 116581516 to 116581525 9 - TSS region transcription start site region 99367
Tssr95875 10 116581545 to 116581585 40 + TSS region transcription start site region 95875
Tssr95876 10 116581589 to 116581607 18 + TSS region transcription start site region 95876
Tssr99368 10 116581824 to 116581875 51 - TSS region transcription start site region 99368
Tssr99369 10 116582123 to 116582139 16 - TSS region transcription start site region 99369
4930584D05Rik 10 116602791 to 116603293 502 unclassified gene RIKEN cDNA 4930584D05 gene
Gm46203 10 116631826 to 116632303 477 + pseudogene predicted gene, 46203
Gm48403 10 116639292 to 116639426 134 + pseudogene predicted gene, 48403
Gm26579 10 116674591 to 116679303 4712 + lincRNA gene predicted gene, 26579
1700030O20Rik 10 116723067 to 116729177 6110 - lincRNA gene RIKEN cDNA 1700030O20 gene
Tssr99370 10 116729157 to 116729199 42 - TSS region transcription start site region 99370
4930579P08Rik 10 116729253 to 116739760 10507 + lincRNA gene RIKEN cDNA 4930579P08 gene
D10Mit311 10 116755334 to 116755439 105 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-311
Myrfl 10 116776545 to 116896879 120334 - protein coding gene myelin regulatory factor-like
Tssr95877 10 116808798 to 116808811 13 + TSS region transcription start site region 95877
Tssr99371 10 116896675 to 116896685 10 - TSS region transcription start site region 99371
Tssr3363 10 116896895 to 116896906 11 - TSS region transcription start site region 3363
Tssr99372 10 116896908 to 116896956 48 - TSS region transcription start site region 99372
Rab3ip 10 116905780 to 116950460 44680 - protein coding gene RAB3A interacting protein
D10Jpk4 10 116906149 to 116906243 94 DNA segment DNA segment, Chr 10, Japan, Kominami 4
Tssr99373 10 116913872 to 116913901 29 - TSS region transcription start site region 99373
Tssr95878 10 116914001 to 116914020 19 + TSS region transcription start site region 95878
Tssr95879 10 116914102 to 116914115 13 + TSS region transcription start site region 95879
Tssr95880 10 116914118 to 116914128 10 + TSS region transcription start site region 95880
Tssr95881 10 116914148 to 116914181 33 + TSS region transcription start site region 95881
Tssr95882 10 116914187 to 116914198 11 + TSS region transcription start site region 95882
Tssr95883 10 116914280 to 116914303 23 + TSS region transcription start site region 95883
Tssr95884 10 116914358 to 116914398 40 + TSS region transcription start site region 95884
Tssr99374 10 116918925 to 116918931 6 - TSS region transcription start site region 99374
Tssr99375 10 116919639 to 116919658 19 - TSS region transcription start site region 99375
Tssr99376 10 116926079 to 116926102 23 - TSS region transcription start site region 99376
Tssr99377 10 116931851 to 116931867 16 - TSS region transcription start site region 99377
Cpgi2218 10 116949615 to 116950756 1141 CpG island CpG island 2218
Tssr99378 10 116950366 to 116950432 66 - TSS region transcription start site region 99378
Tssr99379 10 116950445 to 116950456 11 - TSS region transcription start site region 99379
Tssr95885 10 116950553 to 116950625 72 + TSS region transcription start site region 95885
4933412E12Rik 10 116950562 to 116963279 12717 + bidirectional promoter lncRNA gene RIKEN cDNA 4933412E12 gene
Tssr95886 10 116950633 to 116950647 14 + TSS region transcription start site region 95886
Gm40768 10 116953654 to 116958943 5289 - lncRNA gene predicted gene, 40768
Gm10271 10 116956824 to 116972609 15785 - protein coding gene predicted gene 10271
Tssr95887 10 116962428 to 116962432 4 + TSS region transcription start site region 95887
Tssr95888 10 116962444 to 116962460 16 + TSS region transcription start site region 95888
Tssr95889 10 116962462 to 116962467 5 + TSS region transcription start site region 95889
Tssr95890 10 116964734 to 116964745 11 + TSS region transcription start site region 95890
D630029K05Rik 10 116964740 to 116969108 4368 + lincRNA gene RIKEN cDNA D630029K05 gene
Tssr95891 10 116964747 to 116964760 13 + TSS region transcription start site region 95891
Tssr95892 10 116964779 to 116964786 7 + TSS region transcription start site region 95892
Tssr95893 10 116964832 to 116964842 10 + TSS region transcription start site region 95893
Tssr95894 10 116966221 to 116966246 25 + TSS region transcription start site region 95894
Tssr95895 10 116966286 to 116966295 9 + TSS region transcription start site region 95895
Tssr95896 10 116966363 to 116966367 4 + TSS region transcription start site region 95896
Gm5781 10 116972766 to 116973208 442 - pseudogene predicted gene 5781
Tssr99380 10 116973221 to 116973231 10 - TSS region transcription start site region 99380
Gm46182 10 116983666 to 116986763 3097 - lncRNA gene predicted gene, 46182
Best3 10 116986314 to 117025040 38726 + protein coding gene bestrophin 3
Tssr95897 10 116986622 to 116986635 13 + TSS region transcription start site region 95897
Tssr95898 10 116986651 to 116986695 44 + TSS region transcription start site region 95898
Cpgi2219 10 116993006 to 116993358 352 CpG island CpG island 2219
Cpgi2220 10 117004213 to 117004540 327 CpG island CpG island 2220