Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:116476545-117196879

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnot2 10 116485161 to 116581511 96350 - protein coding gene CCR4-NOT transcription complex, subunit 2
Gm31593 10 116507195 to 116522581 15386 + lncRNA gene predicted gene, 31593
Tssr95873 10 116509027 to 116509034 7 + TSS region transcription start site region 95873
Tssr95874 10 116509037 to 116509064 27 + TSS region transcription start site region 95874
5330438D12Rik 10 116509052 to 116583515 74463 + unclassified non-coding RNA gene RIKEN cDNA 5330438D12 gene
Tssr99355 10 116515394 to 116515397 3 - TSS region transcription start site region 99355
Tssr99356 10 116517967 to 116517971 4 - TSS region transcription start site region 99356
Tssr99357 10 116522099 to 116522103 4 - TSS region transcription start site region 99357
Gm25190 10 116531646 to 116531740 94 - miRNA gene predicted gene, 25190
Tssr99358 10 116535820 to 116535833 13 - TSS region transcription start site region 99358
Tssr99359 10 116545819 to 116545823 4 - TSS region transcription start site region 99359
Tssr99360 10 116549101 to 116549128 27 - TSS region transcription start site region 99360
Tssr99361 10 116549315 to 116549324 9 - TSS region transcription start site region 99361
Tssr99362 10 116559264 to 116559290 26 - TSS region transcription start site region 99362
Tssr99363 10 116559294 to 116559300 6 - TSS region transcription start site region 99363
Tssr99364 10 116559326 to 116559339 13 - TSS region transcription start site region 99364
Tssr99365 10 116564992 to 116565001 9 - TSS region transcription start site region 99365
Gm49344 10 116566782 to 116568031 1249 + unclassified gene predicted gene, 49344
Cpgi2217 10 116580556 to 116582299 1743 CpG island CpG island 2217
Tssr99366 10 116581478 to 116581507 29 - TSS region transcription start site region 99366
Tssr99367 10 116581516 to 116581525 9 - TSS region transcription start site region 99367
Tssr95875 10 116581545 to 116581585 40 + TSS region transcription start site region 95875
Tssr95876 10 116581589 to 116581607 18 + TSS region transcription start site region 95876
Tssr99368 10 116581824 to 116581875 51 - TSS region transcription start site region 99368
Tssr99369 10 116582123 to 116582139 16 - TSS region transcription start site region 99369
4930584D05Rik 10 116602791 to 116603293 502 unclassified gene RIKEN cDNA 4930584D05 gene
Gm46203 10 116631826 to 116632303 477 + pseudogene predicted gene, 46203
Gm48403 10 116639292 to 116639426 134 + pseudogene predicted gene, 48403
Gm26579 10 116674591 to 116679303 4712 + lincRNA gene predicted gene, 26579
1700030O20Rik 10 116723067 to 116729177 6110 - lincRNA gene RIKEN cDNA 1700030O20 gene
Tssr99370 10 116729157 to 116729199 42 - TSS region transcription start site region 99370
4930579P08Rik 10 116729253 to 116739760 10507 + lincRNA gene RIKEN cDNA 4930579P08 gene
D10Mit311 10 116755334 to 116755439 105 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-311
Myrfl 10 116776545 to 116896879 120334 - protein coding gene myelin regulatory factor-like
Tssr95877 10 116808798 to 116808811 13 + TSS region transcription start site region 95877
Tssr99371 10 116896675 to 116896685 10 - TSS region transcription start site region 99371
Tssr3363 10 116896895 to 116896906 11 - TSS region transcription start site region 3363
Tssr99372 10 116896908 to 116896956 48 - TSS region transcription start site region 99372
Rab3ip 10 116905780 to 116950460 44680 - protein coding gene RAB3A interacting protein
D10Jpk4 10 116906149 to 116906243 94 DNA segment DNA segment, Chr 10, Japan, Kominami 4
Tssr99373 10 116913872 to 116913901 29 - TSS region transcription start site region 99373
Tssr95878 10 116914001 to 116914020 19 + TSS region transcription start site region 95878
Tssr95879 10 116914102 to 116914115 13 + TSS region transcription start site region 95879
Tssr95880 10 116914118 to 116914128 10 + TSS region transcription start site region 95880
Tssr95881 10 116914148 to 116914181 33 + TSS region transcription start site region 95881
Tssr95882 10 116914187 to 116914198 11 + TSS region transcription start site region 95882
Tssr95883 10 116914280 to 116914303 23 + TSS region transcription start site region 95883
Tssr95884 10 116914358 to 116914398 40 + TSS region transcription start site region 95884
Tssr99374 10 116918925 to 116918931 6 - TSS region transcription start site region 99374
Tssr99375 10 116919639 to 116919658 19 - TSS region transcription start site region 99375
Tssr99376 10 116926079 to 116926102 23 - TSS region transcription start site region 99376
Tssr99377 10 116931851 to 116931867 16 - TSS region transcription start site region 99377
Cpgi2218 10 116949615 to 116950756 1141 CpG island CpG island 2218
Tssr99378 10 116950366 to 116950432 66 - TSS region transcription start site region 99378
Tssr99379 10 116950445 to 116950456 11 - TSS region transcription start site region 99379
Tssr95885 10 116950553 to 116950625 72 + TSS region transcription start site region 95885
4933412E12Rik 10 116950562 to 116963279 12717 + bidirectional promoter lncRNA gene RIKEN cDNA 4933412E12 gene
Tssr95886 10 116950633 to 116950647 14 + TSS region transcription start site region 95886
Gm40768 10 116953654 to 116958943 5289 - lncRNA gene predicted gene, 40768
Gm10271 10 116956824 to 116972609 15785 - protein coding gene predicted gene 10271
Tssr95887 10 116962428 to 116962432 4 + TSS region transcription start site region 95887
Tssr95888 10 116962444 to 116962460 16 + TSS region transcription start site region 95888
Tssr95889 10 116962462 to 116962467 5 + TSS region transcription start site region 95889
Tssr95890 10 116964734 to 116964745 11 + TSS region transcription start site region 95890
D630029K05Rik 10 116964740 to 116969108 4368 + lincRNA gene RIKEN cDNA D630029K05 gene
Tssr95891 10 116964747 to 116964760 13 + TSS region transcription start site region 95891
Tssr95892 10 116964779 to 116964786 7 + TSS region transcription start site region 95892
Tssr95893 10 116964832 to 116964842 10 + TSS region transcription start site region 95893
Tssr95894 10 116966221 to 116966246 25 + TSS region transcription start site region 95894
Tssr95895 10 116966286 to 116966295 9 + TSS region transcription start site region 95895
Tssr95896 10 116966363 to 116966367 4 + TSS region transcription start site region 95896
Gm5781 10 116972766 to 116973208 442 - pseudogene predicted gene 5781
Tssr99380 10 116973221 to 116973231 10 - TSS region transcription start site region 99380
Gm46182 10 116983666 to 116986763 3097 - lncRNA gene predicted gene, 46182
Best3 10 116986314 to 117025040 38726 + protein coding gene bestrophin 3
Tssr95897 10 116986622 to 116986635 13 + TSS region transcription start site region 95897
Tssr95898 10 116986651 to 116986695 44 + TSS region transcription start site region 95898
Cpgi2219 10 116993006 to 116993358 352 CpG island CpG island 2219
Cpgi2220 10 117004213 to 117004540 327 CpG island CpG island 2220
Cpgi2221 10 117023784 to 117024447 663 CpG island CpG island 2221
Gm10747 10 117043746 to 117045101 1355 + lincRNA gene predicted gene 10747
Lrrc10 10 117045341 to 117046768 1427 + protein coding gene leucine rich repeat containing 10
Tssr95899 10 117045346 to 117045363 17 + TSS region transcription start site region 95899
Cpgi2222 10 117045404 to 117046111 707 CpG island CpG island 2222
D830039D19Rik 10 117047194 to 117049746 2552 unclassified gene RIKEN cDNA D830039D19 gene
Cct2 10 117051001 to 117063814 12813 - protein coding gene chaperonin containing Tcp1, subunit 2 (beta)
Tssr99381 10 117063033 to 117063058 25 - TSS region transcription start site region 99381
Cpgi2223 10 117063215 to 117064038 823 CpG island CpG island 2223
Tssr99382 10 117063335 to 117063366 31 - TSS region transcription start site region 99382
Tssr99383 10 117063741 to 117063752 11 - TSS region transcription start site region 99383
Tssr99384 10 117063764 to 117063802 38 - TSS region transcription start site region 99384
Frs2 10 117070127 to 117148474 78347 - protein coding gene fibroblast growth factor receptor substrate 2
Tssr99385 10 117071789 to 117071806 17 - TSS region transcription start site region 99385
Tssr99386 10 117071970 to 117071984 14 - TSS region transcription start site region 99386
Tssr99387 10 117072087 to 117072088 1 - TSS region transcription start site region 99387
Tssr99388 10 117087127 to 117087130 3 - TSS region transcription start site region 99388
E030003N13Rik 10 117092662 to 117095037 2375 unclassified gene RIKEN cDNA E030003N13 gene
Tssr99389 10 117116488 to 117116492 4 - TSS region transcription start site region 99389
Cpgi2224 10 117147769 to 117148951 1182 CpG island CpG island 2224
Tssr99390 10 117148481 to 117148510 29 - TSS region transcription start site region 99390
Tssr99391 10 117148511 to 117148546 35 - TSS region transcription start site region 99391
Cpgi2225 10 117150040 to 117150300 260 CpG island CpG island 2225
Tssr99392 10 117150400 to 117150413 13 - TSS region transcription start site region 99392
4930423D24Rik 10 117177625 to 117181110 3485 + lincRNA gene RIKEN cDNA 4930423D24 gene
Gm40769 10 117179111 to 117180878 1767 - lncRNA gene predicted gene, 40769
Gm26311 10 117183335 to 117183411 76 - snoRNA gene predicted gene, 26311
Cpgi2226 10 117186887 to 117187135 248 CpG island CpG island 2226
4930528J18Rik 10 117189847 to 117190266 419 unclassified gene RIKEN cDNA 4930528J18 gene
Tssr99393 10 117190261 to 117190278 17 - TSS region transcription start site region 99393