Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:116161516-117001525

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptprr 10 116018213 to 116274932 256719 + protein coding gene protein tyrosine phosphatase, receptor type, R
Tssr99348 10 116176962 to 116176968 6 - TSS region transcription start site region 99348
Tssr95847 10 116177217 to 116177243 26 + TSS region transcription start site region 95847
Tssr95848 10 116177393 to 116177417 24 + TSS region transcription start site region 95848
Tssr3362 10 116177423 to 116177434 11 + TSS region transcription start site region 3362
Tssr95849 10 116177683 to 116177700 17 + TSS region transcription start site region 95849
Tssr95850 10 116177702 to 116177763 61 + TSS region transcription start site region 95850
Tssr95851 10 116187685 to 116187688 3 + TSS region transcription start site region 95851
D10Mit101 10 116239444 to 116239563 119 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 101
Tssr95852 10 116252898 to 116252913 15 + TSS region transcription start site region 95852
Tssr95853 10 116275491 to 116275504 13 + TSS region transcription start site region 95853
Ptprb 10 116275523 to 116389535 114012 + protein coding gene protein tyrosine phosphatase, receptor type, B
Tssr95854 10 116275536 to 116275576 40 + TSS region transcription start site region 95854
Tssr95855 10 116275581 to 116275590 9 + TSS region transcription start site region 95855
Gm47625 10 116284549 to 116286343 1794 + unclassified gene predicted gene, 47625
Tssr95856 10 116289379 to 116289398 19 + TSS region transcription start site region 95856
Tssr99349 10 116297891 to 116297923 32 - TSS region transcription start site region 99349
Cpgi2212 10 116301236 to 116302056 820 CpG island CpG island 2212
Tssr95857 10 116301417 to 116301428 11 + TSS region transcription start site region 95857
Tssr95858 10 116301455 to 116301475 20 + TSS region transcription start site region 95858
Tssr95859 10 116301489 to 116301504 15 + TSS region transcription start site region 95859
Tssr95860 10 116310021 to 116310025 4 + TSS region transcription start site region 95860
Tssr95861 10 116315055 to 116315076 21 + TSS region transcription start site region 95861
Tssr95862 10 116325229 to 116325233 4 + TSS region transcription start site region 95862
Gm26495 10 116340583 to 116340719 136 + snoRNA gene predicted gene, 26495
Tssr95863 10 116346880 to 116346889 9 + TSS region transcription start site region 95863
Tssr95864 10 116347386 to 116347389 3 + TSS region transcription start site region 95864
D10Mit295 10 116354953 to 116355075 122 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 295
Obsty3 10 116355075 to 8359714 -107995361 QTL obesity 3
Tssr95865 10 116365359 to 116365372 13 + TSS region transcription start site region 95865
Tssr95866 10 116372861 to 116372865 4 + TSS region transcription start site region 95866
Tssr95867 10 116377631 to 116377632 1 + TSS region transcription start site region 95867
Lmr5 10 116384730 to 122343923 5959193 QTL leishmaniasis resistance 5
Lmr5c 10 116384730 to 116384957 227 QTL leishmaniasis resistance 5c
Lmr5e 10 116384730 to 116384957 227 QTL leishmaniasis resistance 5e
Lmr5a 10 116384730 to 116384957 227 QTL leishmaniasis resistance 5a
D10Mit46 10 116384730 to 116384957 227 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 46
Lmr32c 10 116384957 to 99473556 -16911401 QTL leishmaniasis resistance 32c
Lmr32 10 116384957 to 99473556 -16911401 QTL leishmaniasis resistance 32
Tssr95868 10 116387469 to 116387475 6 + TSS region transcription start site region 95868
Cpgi2213 10 116397687 to 116397921 234 CpG island CpG island 2213
D10Mit47 10 116410232 to 116410434 202 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 47
Kcnmb4 10 116417861 to 116473542 55681 - protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 4
Tssr95869 10 116418048 to 116418103 55 + TSS region transcription start site region 95869
Tssr95870 10 116418117 to 116418137 20 + TSS region transcription start site region 95870
Kcnmb4os1 10 116418121 to 116421235 3114 + antisense lncRNA gene potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1
Tssr95871 10 116418139 to 116418148 9 + TSS region transcription start site region 95871
Cpgi2214 10 116418172 to 116418397 225 CpG island CpG island 2214
Cpgi2215 10 116428105 to 116428261 156 CpG island CpG island 2215
Cpgi2216 10 116472903 to 116474597 1694 CpG island CpG island 2216
Kcnmb4os2 10 116473163 to 116474987 1824 + antisense lncRNA gene potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 2
Tssr99350 10 116473395 to 116473406 11 - TSS region transcription start site region 99350
Tssr99351 10 116473418 to 116473514 96 - TSS region transcription start site region 99351
Tssr99352 10 116473545 to 116473561 16 - TSS region transcription start site region 99352
Tssr99353 10 116473628 to 116473644 16 - TSS region transcription start site region 99353
Tssr99354 10 116473875 to 116473929 54 - TSS region transcription start site region 99354
Tssr95872 10 116474021 to 116474032 11 + TSS region transcription start site region 95872
Cnot2 10 116485161 to 116581511 96350 - protein coding gene CCR4-NOT transcription complex, subunit 2
Gm31593 10 116507195 to 116522581 15386 + lncRNA gene predicted gene, 31593
Tssr95873 10 116509027 to 116509034 7 + TSS region transcription start site region 95873
Tssr95874 10 116509037 to 116509064 27 + TSS region transcription start site region 95874
5330438D12Rik 10 116509052 to 116583515 74463 + unclassified non-coding RNA gene RIKEN cDNA 5330438D12 gene
Tssr99355 10 116515394 to 116515397 3 - TSS region transcription start site region 99355
Tssr99356 10 116517967 to 116517971 4 - TSS region transcription start site region 99356
Tssr99357 10 116522099 to 116522103 4 - TSS region transcription start site region 99357
Gm25190 10 116531646 to 116531740 94 - miRNA gene predicted gene, 25190
Tssr99358 10 116535820 to 116535833 13 - TSS region transcription start site region 99358
Tssr99359 10 116545819 to 116545823 4 - TSS region transcription start site region 99359
Tssr99360 10 116549101 to 116549128 27 - TSS region transcription start site region 99360
Tssr99361 10 116549315 to 116549324 9 - TSS region transcription start site region 99361
Tssr99362 10 116559264 to 116559290 26 - TSS region transcription start site region 99362
Tssr99363 10 116559294 to 116559300 6 - TSS region transcription start site region 99363
Tssr99364 10 116559326 to 116559339 13 - TSS region transcription start site region 99364
Tssr99365 10 116564992 to 116565001 9 - TSS region transcription start site region 99365
Gm49344 10 116566782 to 116568031 1249 + unclassified gene predicted gene, 49344
Cpgi2217 10 116580556 to 116582299 1743 CpG island CpG island 2217
Tssr99366 10 116581478 to 116581507 29 - TSS region transcription start site region 99366
Tssr99367 10 116581516 to 116581525 9 - TSS region transcription start site region 99367
Tssr95875 10 116581545 to 116581585 40 + TSS region transcription start site region 95875
Tssr95876 10 116581589 to 116581607 18 + TSS region transcription start site region 95876
Tssr99368 10 116581824 to 116581875 51 - TSS region transcription start site region 99368
Tssr99369 10 116582123 to 116582139 16 - TSS region transcription start site region 99369
4930584D05Rik 10 116602791 to 116603293 502 unclassified gene RIKEN cDNA 4930584D05 gene
Gm46203 10 116631826 to 116632303 477 + pseudogene predicted gene, 46203
Gm48403 10 116639292 to 116639426 134 + pseudogene predicted gene, 48403
Gm26579 10 116674591 to 116679303 4712 + lincRNA gene predicted gene, 26579
1700030O20Rik 10 116723067 to 116729177 6110 - lincRNA gene RIKEN cDNA 1700030O20 gene
Tssr99370 10 116729157 to 116729199 42 - TSS region transcription start site region 99370
4930579P08Rik 10 116729253 to 116739760 10507 + lincRNA gene RIKEN cDNA 4930579P08 gene
D10Mit311 10 116755334 to 116755439 105 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-311
Myrfl 10 116776545 to 116896879 120334 - protein coding gene myelin regulatory factor-like
Tssr95877 10 116808798 to 116808811 13 + TSS region transcription start site region 95877
Tssr99371 10 116896675 to 116896685 10 - TSS region transcription start site region 99371
Tssr3363 10 116896895 to 116896906 11 - TSS region transcription start site region 3363
Tssr99372 10 116896908 to 116896956 48 - TSS region transcription start site region 99372
Rab3ip 10 116905780 to 116950460 44680 - protein coding gene RAB3A interacting protein
D10Jpk4 10 116906149 to 116906243 94 DNA segment DNA segment, Chr 10, Japan, Kominami 4
Tssr99373 10 116913872 to 116913901 29 - TSS region transcription start site region 99373
Tssr95878 10 116914001 to 116914020 19 + TSS region transcription start site region 95878
Tssr95879 10 116914102 to 116914115 13 + TSS region transcription start site region 95879
Tssr95880 10 116914118 to 116914128 10 + TSS region transcription start site region 95880
Tssr95881 10 116914148 to 116914181 33 + TSS region transcription start site region 95881
Tssr95882 10 116914187 to 116914198 11 + TSS region transcription start site region 95882
Tssr95883 10 116914280 to 116914303 23 + TSS region transcription start site region 95883
Tssr95884 10 116914358 to 116914398 40 + TSS region transcription start site region 95884
Tssr99374 10 116918925 to 116918931 6 - TSS region transcription start site region 99374
Tssr99375 10 116919639 to 116919658 19 - TSS region transcription start site region 99375
Tssr99376 10 116926079 to 116926102 23 - TSS region transcription start site region 99376
Tssr99377 10 116931851 to 116931867 16 - TSS region transcription start site region 99377
Cpgi2218 10 116949615 to 116950756 1141 CpG island CpG island 2218
Tssr99378 10 116950366 to 116950432 66 - TSS region transcription start site region 99378
Tssr99379 10 116950445 to 116950456 11 - TSS region transcription start site region 99379
Tssr95885 10 116950553 to 116950625 72 + TSS region transcription start site region 95885
4933412E12Rik 10 116950562 to 116963279 12717 + bidirectional promoter lncRNA gene RIKEN cDNA 4933412E12 gene
Tssr95886 10 116950633 to 116950647 14 + TSS region transcription start site region 95886
Gm40768 10 116953654 to 116958943 5289 - lncRNA gene predicted gene, 40768
Gm10271 10 116956824 to 116972609 15785 - protein coding gene predicted gene 10271
Tssr95887 10 116962428 to 116962432 4 + TSS region transcription start site region 95887
Tssr95888 10 116962444 to 116962460 16 + TSS region transcription start site region 95888
Tssr95889 10 116962462 to 116962467 5 + TSS region transcription start site region 95889
Tssr95890 10 116964734 to 116964745 11 + TSS region transcription start site region 95890
D630029K05Rik 10 116964740 to 116969108 4368 + lincRNA gene RIKEN cDNA D630029K05 gene
Tssr95891 10 116964747 to 116964760 13 + TSS region transcription start site region 95891
Tssr95892 10 116964779 to 116964786 7 + TSS region transcription start site region 95892
Tssr95893 10 116964832 to 116964842 10 + TSS region transcription start site region 95893
Tssr95894 10 116966221 to 116966246 25 + TSS region transcription start site region 95894
Tssr95895 10 116966286 to 116966295 9 + TSS region transcription start site region 95895
Tssr95896 10 116966363 to 116966367 4 + TSS region transcription start site region 95896
Gm5781 10 116972766 to 116973208 442 - pseudogene predicted gene 5781
Tssr99380 10 116973221 to 116973231 10 - TSS region transcription start site region 99380
Gm46182 10 116983666 to 116986763 3097 - lncRNA gene predicted gene, 46182
Best3 10 116986314 to 117025040 38726 + protein coding gene bestrophin 3
Tssr95897 10 116986622 to 116986635 13 + TSS region transcription start site region 95897
Tssr95898 10 116986651 to 116986695 44 + TSS region transcription start site region 95898
Cpgi2219 10 116993006 to 116993358 352 CpG island CpG island 2219