Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:116156880-116536889

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptprr 10 116018213 to 116274932 256719 + protein coding gene protein tyrosine phosphatase, receptor type, R
Tssr99348 10 116176962 to 116176968 6 - TSS region transcription start site region 99348
Tssr95847 10 116177217 to 116177243 26 + TSS region transcription start site region 95847
Tssr95848 10 116177393 to 116177417 24 + TSS region transcription start site region 95848
Tssr3362 10 116177423 to 116177434 11 + TSS region transcription start site region 3362
Tssr95849 10 116177683 to 116177700 17 + TSS region transcription start site region 95849
Tssr95850 10 116177702 to 116177763 61 + TSS region transcription start site region 95850
Tssr95851 10 116187685 to 116187688 3 + TSS region transcription start site region 95851
D10Mit101 10 116239444 to 116239563 119 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 101
Tssr95852 10 116252898 to 116252913 15 + TSS region transcription start site region 95852
Tssr95853 10 116275491 to 116275504 13 + TSS region transcription start site region 95853
Ptprb 10 116275523 to 116389535 114012 + protein coding gene protein tyrosine phosphatase, receptor type, B
Tssr95854 10 116275536 to 116275576 40 + TSS region transcription start site region 95854
Tssr95855 10 116275581 to 116275590 9 + TSS region transcription start site region 95855
Gm47625 10 116284549 to 116286343 1794 + unclassified gene predicted gene, 47625
Tssr95856 10 116289379 to 116289398 19 + TSS region transcription start site region 95856
Tssr99349 10 116297891 to 116297923 32 - TSS region transcription start site region 99349
Cpgi2212 10 116301236 to 116302056 820 CpG island CpG island 2212
Tssr95857 10 116301417 to 116301428 11 + TSS region transcription start site region 95857
Tssr95858 10 116301455 to 116301475 20 + TSS region transcription start site region 95858
Tssr95859 10 116301489 to 116301504 15 + TSS region transcription start site region 95859
Tssr95860 10 116310021 to 116310025 4 + TSS region transcription start site region 95860
Tssr95861 10 116315055 to 116315076 21 + TSS region transcription start site region 95861
Tssr95862 10 116325229 to 116325233 4 + TSS region transcription start site region 95862
Gm26495 10 116340583 to 116340719 136 + snoRNA gene predicted gene, 26495
Tssr95863 10 116346880 to 116346889 9 + TSS region transcription start site region 95863
Tssr95864 10 116347386 to 116347389 3 + TSS region transcription start site region 95864
D10Mit295 10 116354953 to 116355075 122 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 295
Obsty3 10 116355075 to 8359714 -107995361 QTL obesity 3
Tssr95865 10 116365359 to 116365372 13 + TSS region transcription start site region 95865
Tssr95866 10 116372861 to 116372865 4 + TSS region transcription start site region 95866
Tssr95867 10 116377631 to 116377632 1 + TSS region transcription start site region 95867
D10Mit46 10 116384730 to 116384957 227 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 46
Lmr5e 10 116384730 to 116384957 227 QTL leishmaniasis resistance 5e
Lmr5 10 116384730 to 122343923 5959193 QTL leishmaniasis resistance 5
Lmr5a 10 116384730 to 116384957 227 QTL leishmaniasis resistance 5a
Lmr5c 10 116384730 to 116384957 227 QTL leishmaniasis resistance 5c
Lmr32 10 116384957 to 99473556 -16911401 QTL leishmaniasis resistance 32
Lmr32c 10 116384957 to 99473556 -16911401 QTL leishmaniasis resistance 32c
Tssr95868 10 116387469 to 116387475 6 + TSS region transcription start site region 95868
Cpgi2213 10 116397687 to 116397921 234 CpG island CpG island 2213
D10Mit47 10 116410232 to 116410434 202 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 47
Kcnmb4 10 116417861 to 116473542 55681 - protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 4
Tssr95869 10 116418048 to 116418103 55 + TSS region transcription start site region 95869
Tssr95870 10 116418117 to 116418137 20 + TSS region transcription start site region 95870
Kcnmb4os1 10 116418121 to 116421235 3114 + antisense lncRNA gene potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1
Tssr95871 10 116418139 to 116418148 9 + TSS region transcription start site region 95871
Cpgi2214 10 116418172 to 116418397 225 CpG island CpG island 2214
Cpgi2215 10 116428105 to 116428261 156 CpG island CpG island 2215
Cpgi2216 10 116472903 to 116474597 1694 CpG island CpG island 2216
Kcnmb4os2 10 116473163 to 116474987 1824 + antisense lncRNA gene potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 2
Tssr99350 10 116473395 to 116473406 11 - TSS region transcription start site region 99350
Tssr99351 10 116473418 to 116473514 96 - TSS region transcription start site region 99351
Tssr99352 10 116473545 to 116473561 16 - TSS region transcription start site region 99352
Tssr99353 10 116473628 to 116473644 16 - TSS region transcription start site region 99353
Tssr99354 10 116473875 to 116473929 54 - TSS region transcription start site region 99354
Tssr95872 10 116474021 to 116474032 11 + TSS region transcription start site region 95872
Cnot2 10 116485161 to 116581511 96350 - protein coding gene CCR4-NOT transcription complex, subunit 2
Gm31593 10 116507195 to 116522581 15386 + lncRNA gene predicted gene, 31593
Tssr95873 10 116509027 to 116509034 7 + TSS region transcription start site region 95873
Tssr95874 10 116509037 to 116509064 27 + TSS region transcription start site region 95874
5330438D12Rik 10 116509052 to 116583515 74463 + unclassified non-coding RNA gene RIKEN cDNA 5330438D12 gene
Tssr99355 10 116515394 to 116515397 3 - TSS region transcription start site region 99355
Tssr99356 10 116517967 to 116517971 4 - TSS region transcription start site region 99356
Tssr99357 10 116522099 to 116522103 4 - TSS region transcription start site region 99357
Gm25190 10 116531646 to 116531740 94 - miRNA gene predicted gene, 25190
Tssr99358 10 116535820 to 116535833 13 - TSS region transcription start site region 99358