Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:115521664-116703917

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lgr5 10 115450314 to 115587780 137466 - protein coding gene leucine rich repeat containing G protein coupled receptor 5
Tssr3359 10 115556867 to 115556874 7 + TSS region transcription start site region 3359
Tssr99337 10 115569746 to 115569750 4 - TSS region transcription start site region 99337
A930009A15Rik 10 115569986 to 115582448 12462 + protein coding gene RIKEN cDNA A930009A15 gene
Tssr95829 10 115570009 to 115570035 26 + TSS region transcription start site region 95829
Tssr95830 10 115570041 to 115570055 14 + TSS region transcription start site region 95830
Cpgi2208 10 115586905 to 115588040 1135 CpG island CpG island 2208
Tssr99338 10 115587739 to 115587768 29 - TSS region transcription start site region 99338
Gm8960 10 115598984 to 115599788 804 - pseudogene predicted gene 8960
Cpgi2209 10 115664540 to 115664772 232 CpG island CpG island 2209
D10Mit100 10 115674572 to 115674687 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 100
Tssr3360 10 115764035 to 115764036 1 + TSS region transcription start site region 3360
Tspan8 10 115816832 to 115849893 33061 + protein coding gene tetraspanin 8
Tssr95831 10 115817130 to 115817141 11 + TSS region transcription start site region 95831
Tssr3361 10 115817179 to 115817188 9 + TSS region transcription start site region 3361
Tssr95832 10 115817247 to 115817323 76 + TSS region transcription start site region 95832
Tssr95833 10 115817327 to 115817342 15 + TSS region transcription start site region 95833
Tssr95834 10 115817356 to 115817369 13 + TSS region transcription start site region 95834
Tssr95835 10 115817441 to 115817454 13 + TSS region transcription start site region 95835
Tssr95836 10 115817460 to 115817489 29 + TSS region transcription start site region 95836
Tssr95837 10 115817499 to 115817514 15 + TSS region transcription start site region 95837
Tssr95838 10 115817524 to 115817533 9 + TSS region transcription start site region 95838
Tssr95839 10 115833039 to 115833042 3 + TSS region transcription start site region 95839
Tssr95840 10 115846317 to 115846329 12 + TSS region transcription start site region 95840
4930422I22Rik 10 115849800 to 115869091 19291 - antisense lncRNA gene RIKEN cDNA 4930422I22 gene
Ptprr 10 116018213 to 116274932 256719 + protein coding gene protein tyrosine phosphatase, receptor type, R
Tssr95841 10 116018352 to 116018421 69 + TSS region transcription start site region 95841
Cpgi2210 10 116018364 to 116018793 429 CpG island CpG island 2210
Tssr95842 10 116018426 to 116018440 14 + TSS region transcription start site region 95842
Tssr95843 10 116018444 to 116018454 10 + TSS region transcription start site region 95843
Tssr99339 10 116098640 to 116098648 8 - TSS region transcription start site region 99339
Taf7l2 10 116111664 to 116113917 2253 - protein coding gene Taf7l2
Cpgi2211 10 116113312 to 116114405 1093 CpG island CpG island 2211
Tssr99340 10 116113874 to 116113880 6 - TSS region transcription start site region 99340
Tssr99341 10 116113889 to 116113933 44 - TSS region transcription start site region 99341
Tssr99342 10 116113934 to 116113941 7 - TSS region transcription start site region 99342
Tssr99343 10 116113944 to 116113949 5 - TSS region transcription start site region 99343
Tssr99344 10 116113952 to 116113957 5 - TSS region transcription start site region 99344
Tssr99345 10 116114241 to 116114263 22 - TSS region transcription start site region 99345
Tssr99346 10 116114264 to 116114279 15 - TSS region transcription start site region 99346
Tssr99347 10 116114283 to 116114299 16 - TSS region transcription start site region 99347
Tssr95844 10 116143881 to 116143902 21 + TSS region transcription start site region 95844
Tssr95845 10 116143910 to 116143922 12 + TSS region transcription start site region 95845
Tssr95846 10 116143942 to 116143952 10 + TSS region transcription start site region 95846
Tssr99348 10 116176962 to 116176968 6 - TSS region transcription start site region 99348
Tssr95847 10 116177217 to 116177243 26 + TSS region transcription start site region 95847
Tssr95848 10 116177393 to 116177417 24 + TSS region transcription start site region 95848
Tssr3362 10 116177423 to 116177434 11 + TSS region transcription start site region 3362
Tssr95849 10 116177683 to 116177700 17 + TSS region transcription start site region 95849
Tssr95850 10 116177702 to 116177763 61 + TSS region transcription start site region 95850
Tssr95851 10 116187685 to 116187688 3 + TSS region transcription start site region 95851
D10Mit101 10 116239444 to 116239563 119 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 101
Tssr95852 10 116252898 to 116252913 15 + TSS region transcription start site region 95852
Tssr95853 10 116275491 to 116275504 13 + TSS region transcription start site region 95853
Ptprb 10 116275523 to 116389535 114012 + protein coding gene protein tyrosine phosphatase, receptor type, B
Tssr95854 10 116275536 to 116275576 40 + TSS region transcription start site region 95854
Tssr95855 10 116275581 to 116275590 9 + TSS region transcription start site region 95855
Gm47625 10 116284549 to 116286343 1794 + unclassified gene predicted gene, 47625
Tssr95856 10 116289379 to 116289398 19 + TSS region transcription start site region 95856
Tssr99349 10 116297891 to 116297923 32 - TSS region transcription start site region 99349
Cpgi2212 10 116301236 to 116302056 820 CpG island CpG island 2212
Tssr95857 10 116301417 to 116301428 11 + TSS region transcription start site region 95857
Tssr95858 10 116301455 to 116301475 20 + TSS region transcription start site region 95858
Tssr95859 10 116301489 to 116301504 15 + TSS region transcription start site region 95859
Tssr95860 10 116310021 to 116310025 4 + TSS region transcription start site region 95860
Tssr95861 10 116315055 to 116315076 21 + TSS region transcription start site region 95861
Tssr95862 10 116325229 to 116325233 4 + TSS region transcription start site region 95862
Gm26495 10 116340583 to 116340719 136 + snoRNA gene predicted gene, 26495
Tssr95863 10 116346880 to 116346889 9 + TSS region transcription start site region 95863
Tssr95864 10 116347386 to 116347389 3 + TSS region transcription start site region 95864
D10Mit295 10 116354953 to 116355075 122 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 295
Obsty3 10 116355075 to 8359714 -107995361 QTL obesity 3
Tssr95865 10 116365359 to 116365372 13 + TSS region transcription start site region 95865
Tssr95866 10 116372861 to 116372865 4 + TSS region transcription start site region 95866
Tssr95867 10 116377631 to 116377632 1 + TSS region transcription start site region 95867
Lmr5 10 116384730 to 122343923 5959193 QTL leishmaniasis resistance 5
Lmr5a 10 116384730 to 116384957 227 QTL leishmaniasis resistance 5a
Lmr5c 10 116384730 to 116384957 227 QTL leishmaniasis resistance 5c
Lmr5e 10 116384730 to 116384957 227 QTL leishmaniasis resistance 5e
D10Mit46 10 116384730 to 116384957 227 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 46
Lmr32 10 116384957 to 99473556 -16911401 QTL leishmaniasis resistance 32
Lmr32c 10 116384957 to 99473556 -16911401 QTL leishmaniasis resistance 32c
Tssr95868 10 116387469 to 116387475 6 + TSS region transcription start site region 95868
Cpgi2213 10 116397687 to 116397921 234 CpG island CpG island 2213
D10Mit47 10 116410232 to 116410434 202 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 47
Kcnmb4 10 116417861 to 116473542 55681 - protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 4
Tssr95869 10 116418048 to 116418103 55 + TSS region transcription start site region 95869
Tssr95870 10 116418117 to 116418137 20 + TSS region transcription start site region 95870
Kcnmb4os1 10 116418121 to 116421235 3114 + antisense lncRNA gene potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1
Tssr95871 10 116418139 to 116418148 9 + TSS region transcription start site region 95871
Cpgi2214 10 116418172 to 116418397 225 CpG island CpG island 2214
Cpgi2215 10 116428105 to 116428261 156 CpG island CpG island 2215
Cpgi2216 10 116472903 to 116474597 1694 CpG island CpG island 2216
Kcnmb4os2 10 116473163 to 116474987 1824 + antisense lncRNA gene potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 2
Tssr99350 10 116473395 to 116473406 11 - TSS region transcription start site region 99350
Tssr99351 10 116473418 to 116473514 96 - TSS region transcription start site region 99351
Tssr99352 10 116473545 to 116473561 16 - TSS region transcription start site region 99352
Tssr99353 10 116473628 to 116473644 16 - TSS region transcription start site region 99353
Tssr99354 10 116473875 to 116473929 54 - TSS region transcription start site region 99354
Tssr95872 10 116474021 to 116474032 11 + TSS region transcription start site region 95872
Cnot2 10 116485161 to 116581511 96350 - protein coding gene CCR4-NOT transcription complex, subunit 2
Gm31593 10 116507195 to 116522581 15386 + lncRNA gene predicted gene, 31593
Tssr95873 10 116509027 to 116509034 7 + TSS region transcription start site region 95873
Tssr95874 10 116509037 to 116509064 27 + TSS region transcription start site region 95874
5330438D12Rik 10 116509052 to 116583515 74463 + unclassified non-coding RNA gene RIKEN cDNA 5330438D12 gene
Tssr99355 10 116515394 to 116515397 3 - TSS region transcription start site region 99355
Tssr99356 10 116517967 to 116517971 4 - TSS region transcription start site region 99356
Tssr99357 10 116522099 to 116522103 4 - TSS region transcription start site region 99357
Gm25190 10 116531646 to 116531740 94 - miRNA gene predicted gene, 25190
Tssr99358 10 116535820 to 116535833 13 - TSS region transcription start site region 99358
Tssr99359 10 116545819 to 116545823 4 - TSS region transcription start site region 99359
Tssr99360 10 116549101 to 116549128 27 - TSS region transcription start site region 99360
Tssr99361 10 116549315 to 116549324 9 - TSS region transcription start site region 99361
Tssr99362 10 116559264 to 116559290 26 - TSS region transcription start site region 99362
Tssr99363 10 116559294 to 116559300 6 - TSS region transcription start site region 99363
Tssr99364 10 116559326 to 116559339 13 - TSS region transcription start site region 99364
Tssr99365 10 116564992 to 116565001 9 - TSS region transcription start site region 99365
Gm49344 10 116566782 to 116568031 1249 + unclassified gene predicted gene, 49344
Cpgi2217 10 116580556 to 116582299 1743 CpG island CpG island 2217
Tssr99366 10 116581478 to 116581507 29 - TSS region transcription start site region 99366
Tssr99367 10 116581516 to 116581525 9 - TSS region transcription start site region 99367
Tssr95875 10 116581545 to 116581585 40 + TSS region transcription start site region 95875
Tssr95876 10 116581589 to 116581607 18 + TSS region transcription start site region 95876
Tssr99368 10 116581824 to 116581875 51 - TSS region transcription start site region 99368
Tssr99369 10 116582123 to 116582139 16 - TSS region transcription start site region 99369
4930584D05Rik 10 116602791 to 116603293 502 unclassified gene RIKEN cDNA 4930584D05 gene
Gm46203 10 116631826 to 116632303 477 + pseudogene predicted gene, 46203
Gm48403 10 116639292 to 116639426 134 + pseudogene predicted gene, 48403
Gm26579 10 116674591 to 116679303 4712 + lincRNA gene predicted gene, 26579