Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:115073984-116124788

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tph2 10 115078641 to 115185022 106381 - protein coding gene tryptophan hydroxylase 2
Tssr99304 10 115185015 to 115185029 14 - TSS region transcription start site region 99304
Tbc1d15 10 115197872 to 115251467 53595 - protein coding gene TBC1 domain family, member 15
Tssr99305 10 115222691 to 115222702 11 - TSS region transcription start site region 99305
Tssr99306 10 115222704 to 115222712 8 - TSS region transcription start site region 99306
Tssr99307 10 115250506 to 115250517 11 - TSS region transcription start site region 99307
Tssr99308 10 115250531 to 115250540 9 - TSS region transcription start site region 99308
Cpgi2203 10 115250941 to 115251741 800 CpG island CpG island 2203
Tssr3358 10 115251377 to 115251389 12 - TSS region transcription start site region 3358
Tssr99309 10 115251407 to 115251464 57 - TSS region transcription start site region 99309
Tssr95804 10 115251640 to 115251669 29 + TSS region transcription start site region 95804
Gm22794 10 115257624 to 115257929 305 - unclassified non-coding RNA gene predicted gene, 22794
Tssr95805 10 115269945 to 115269951 6 + TSS region transcription start site region 95805
Gm8942 10 115269978 to 115270377 399 + pseudogene predicted gene 8942
Tssr99310 10 115287974 to 115287985 11 - TSS region transcription start site region 99310
Tssr99311 10 115287991 to 115288001 10 - TSS region transcription start site region 99311
Tssr99312 10 115288022 to 115288033 11 - TSS region transcription start site region 99312
Tssr99313 10 115288048 to 115288131 83 - TSS region transcription start site region 99313
Tssr99314 10 115288141 to 115288156 15 - TSS region transcription start site region 99314
Tssr99315 10 115288324 to 115288334 10 - TSS region transcription start site region 99315
Rab21 10 115289862 to 115315899 26037 - protein coding gene RAB21, member RAS oncogene family
Tssr99316 10 115289932 to 115289937 5 - TSS region transcription start site region 99316
Tssr99317 10 115290281 to 115290324 43 - TSS region transcription start site region 99317
Cpgi2204 10 115314814 to 115316113 1299 CpG island CpG island 2204
Tssr99318 10 115314875 to 115314887 12 - TSS region transcription start site region 99318
Tssr99319 10 115314909 to 115314930 21 - TSS region transcription start site region 99319
Tssr95806 10 115315031 to 115315054 23 + TSS region transcription start site region 95806
Tssr95807 10 115315083 to 115315094 11 + TSS region transcription start site region 95807
Tssr99320 10 115315507 to 115315522 15 - TSS region transcription start site region 99320
Tssr99321 10 115315546 to 115315615 69 - TSS region transcription start site region 99321
Tssr99322 10 115315617 to 115315624 7 - TSS region transcription start site region 99322
Tssr95808 10 115315640 to 115315670 30 + TSS region transcription start site region 95808
Gm10752 10 115315646 to 115316374 728 + unclassified gene predicted gene 10752
Tssr95809 10 115315672 to 115315694 22 + TSS region transcription start site region 95809
Tssr99323 10 115332508 to 115332553 45 - TSS region transcription start site region 99323
D10Mit34 10 115333565 to 115333711 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 34
D10Mit33 10 115333612 to 115333711 99 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 33
Tmem19 10 115340739 to 115362524 21785 - protein coding gene transmembrane protein 19
Gm19006 10 115354633 to 115355399 766 - pseudogene predicted gene, 19006
Tssr95810 10 115358761 to 115358795 34 + TSS region transcription start site region 95810
Tssr99324 10 115361870 to 115361876 6 - TSS region transcription start site region 99324
Cpgi2205 10 115362072 to 115362635 563 CpG island CpG island 2205
Tssr99325 10 115362152 to 115362163 11 - TSS region transcription start site region 99325
Tssr99326 10 115362177 to 115362184 7 - TSS region transcription start site region 99326
Tssr99327 10 115362191 to 115362255 64 - TSS region transcription start site region 99327
Tssr99328 10 115362475 to 115362497 22 - TSS region transcription start site region 99328
Tssr99329 10 115362503 to 115362528 25 - TSS region transcription start site region 99329
Tssr95811 10 115362551 to 115362570 19 + TSS region transcription start site region 95811
Tssr95812 10 115362574 to 115362592 18 + TSS region transcription start site region 95812
Thap2 10 115369966 to 115384435 14469 - protein coding gene THAP domain containing, apoptosis associated protein 2
Gm46180 10 115375104 to 115376345 1241 - lncRNA gene predicted gene, 46180
Tssr95813 10 115383917 to 115383950 33 + TSS region transcription start site region 95813
Cpgi2206 10 115384035 to 115386007 1972 CpG island CpG island 2206
Tssr99330 10 115384326 to 115384336 10 - TSS region transcription start site region 99330
Tssr99331 10 115384337 to 115384375 38 - TSS region transcription start site region 99331
Tssr99332 10 115384388 to 115384435 47 - TSS region transcription start site region 99332
Tssr99333 10 115384476 to 115384509 33 - TSS region transcription start site region 99333
Tssr99334 10 115384516 to 115384562 46 - TSS region transcription start site region 99334
Tssr99335 10 115384751 to 115384796 45 - TSS region transcription start site region 99335
Tssr95814 10 115384921 to 115384949 28 + TSS region transcription start site region 95814
Tssr95815 10 115384951 to 115385021 70 + TSS region transcription start site region 95815
Zfc3h1 10 115384959 to 115432772 47813 + protein coding gene zinc finger, C3H1-type containing
Tssr95816 10 115385045 to 115385057 12 + TSS region transcription start site region 95816
Tssr95817 10 115388929 to 115388937 8 + TSS region transcription start site region 95817
Tssr95818 10 115393492 to 115393499 7 + TSS region transcription start site region 95818
A130012E19Rik 10 115394750 to 115397884 3134 + unclassified gene RIKEN cDNA A130012E19 gene
Tssr95819 10 115401261 to 115401268 7 + TSS region transcription start site region 95819
Tssr95820 10 115408862 to 115408874 12 + TSS region transcription start site region 95820
Tssr95821 10 115411386 to 115411392 6 + TSS region transcription start site region 95821
Tssr95822 10 115422333 to 115422338 5 + TSS region transcription start site region 95822
Tssr95823 10 115427319 to 115427332 13 + TSS region transcription start site region 95823
Tssr95824 10 115430881 to 115430905 24 + TSS region transcription start site region 95824
Tssr95825 10 115430906 to 115430921 15 + TSS region transcription start site region 95825
Tssr95826 10 115430937 to 115430946 9 + TSS region transcription start site region 95826
Tssr95827 10 115431069 to 115431081 12 + TSS region transcription start site region 95827
Lgr5 10 115450314 to 115587780 137466 - protein coding gene leucine rich repeat containing G protein coupled receptor 5
Tssr95828 10 115452583 to 115452588 5 + TSS region transcription start site region 95828
Cpgi2207 10 115452715 to 115453054 339 CpG island CpG island 2207
Tssr99336 10 115505646 to 115505661 15 - TSS region transcription start site region 99336
Tssr3359 10 115556867 to 115556874 7 + TSS region transcription start site region 3359
Tssr99337 10 115569746 to 115569750 4 - TSS region transcription start site region 99337
A930009A15Rik 10 115569986 to 115582448 12462 + protein coding gene RIKEN cDNA A930009A15 gene
Tssr95829 10 115570009 to 115570035 26 + TSS region transcription start site region 95829
Tssr95830 10 115570041 to 115570055 14 + TSS region transcription start site region 95830
Cpgi2208 10 115586905 to 115588040 1135 CpG island CpG island 2208
Tssr99338 10 115587739 to 115587768 29 - TSS region transcription start site region 99338
Gm8960 10 115598984 to 115599788 804 - pseudogene predicted gene 8960
Cpgi2209 10 115664540 to 115664772 232 CpG island CpG island 2209
D10Mit100 10 115674572 to 115674687 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 100
Tssr3360 10 115764035 to 115764036 1 + TSS region transcription start site region 3360
Tspan8 10 115816832 to 115849893 33061 + protein coding gene tetraspanin 8
Tssr95831 10 115817130 to 115817141 11 + TSS region transcription start site region 95831
Tssr3361 10 115817179 to 115817188 9 + TSS region transcription start site region 3361
Tssr95832 10 115817247 to 115817323 76 + TSS region transcription start site region 95832
Tssr95833 10 115817327 to 115817342 15 + TSS region transcription start site region 95833
Tssr95834 10 115817356 to 115817369 13 + TSS region transcription start site region 95834
Tssr95835 10 115817441 to 115817454 13 + TSS region transcription start site region 95835
Tssr95836 10 115817460 to 115817489 29 + TSS region transcription start site region 95836
Tssr95837 10 115817499 to 115817514 15 + TSS region transcription start site region 95837
Tssr95838 10 115817524 to 115817533 9 + TSS region transcription start site region 95838
Tssr95839 10 115833039 to 115833042 3 + TSS region transcription start site region 95839
Tssr95840 10 115846317 to 115846329 12 + TSS region transcription start site region 95840
4930422I22Rik 10 115849800 to 115869091 19291 - antisense lncRNA gene RIKEN cDNA 4930422I22 gene
Ptprr 10 116018213 to 116274932 256719 + protein coding gene protein tyrosine phosphatase, receptor type, R
Tssr95841 10 116018352 to 116018421 69 + TSS region transcription start site region 95841
Cpgi2210 10 116018364 to 116018793 429 CpG island CpG island 2210
Tssr95842 10 116018426 to 116018440 14 + TSS region transcription start site region 95842
Tssr95843 10 116018444 to 116018454 10 + TSS region transcription start site region 95843
Tssr99339 10 116098640 to 116098648 8 - TSS region transcription start site region 99339
Taf7l2 10 116111664 to 116113917 2253 - protein coding gene Taf7l2
Cpgi2211 10 116113312 to 116114405 1093 CpG island CpG island 2211
Tssr99340 10 116113874 to 116113880 6 - TSS region transcription start site region 99340
Tssr99341 10 116113889 to 116113933 44 - TSS region transcription start site region 99341
Tssr99342 10 116113934 to 116113941 7 - TSS region transcription start site region 99342
Tssr99343 10 116113944 to 116113949 5 - TSS region transcription start site region 99343
Tssr99344 10 116113952 to 116113957 5 - TSS region transcription start site region 99344
Tssr99345 10 116114241 to 116114263 22 - TSS region transcription start site region 99345
Tssr99346 10 116114264 to 116114279 15 - TSS region transcription start site region 99346
Tssr99347 10 116114283 to 116114299 16 - TSS region transcription start site region 99347