Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:112370888-117387522

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447 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcnc2 10 112271121 to 112467024 195903 + protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 2
Tssr3354 10 112399754 to 112399761 7 + TSS region transcription start site region 3354
D10Mit71 10 112476625 to 112476765 140 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 71
Gm40764 10 112657774 to 112660341 2567 - lncRNA gene predicted gene, 40764
Gm47492 10 112691579 to 112691881 302 + pseudogene predicted gene, 47492
Tssr95798 10 112726913 to 112726927 14 + TSS region transcription start site region 95798
1700010J16Rik 10 112726926 to 112785599 58673 + lincRNA gene RIKEN cDNA 1700010J16 gene
Cpgi2200 10 112785733 to 112785998 265 CpG island CpG island 2200
Tssr3355 10 112837704 to 112837714 10 + TSS region transcription start site region 3355
Tssr95799 10 112837717 to 112837732 15 + TSS region transcription start site region 95799
Tssr3356 10 112837748 to 112837755 7 + TSS region transcription start site region 3356
Gm3942 10 112837752 to 112845385 7633 + lincRNA gene predicted gene 3942
D10Mit13 10 112861843 to 112861972 129 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 13
Atxn7l3b 10 112925430 to 112929001 3571 - protein coding gene ataxin 7-like 3B
Cpgi2201 10 112928329 to 112929184 855 CpG island CpG island 2201
Tssr99292 10 112928403 to 112928416 13 - TSS region transcription start site region 99292
Gm26596 10 112928507 to 112931147 2640 + protein coding gene predicted gene, 26596
Tssr99293 10 112928827 to 112928845 18 - TSS region transcription start site region 99293
Tssr99294 10 112928850 to 112928876 26 - TSS region transcription start site region 99294
Tssr99295 10 112928884 to 112928901 17 - TSS region transcription start site region 99295
Tssr99296 10 112928907 to 112928927 20 - TSS region transcription start site region 99296
Tssr99297 10 112928949 to 112928973 24 - TSS region transcription start site region 99297
Tssr99298 10 112928974 to 112929014 40 - TSS region transcription start site region 99298
Tssr95800 10 112931421 to 112931426 5 + TSS region transcription start site region 95800
Gm22507 10 112931424 to 112931583 159 + snRNA gene predicted gene, 22507
Gm47519 10 112960188 to 112961790 1602 + unclassified gene predicted gene, 47519
Gm47522 10 113025501 to 113028222 2721 + unclassified gene predicted gene, 47522
Gm47524 10 113113389 to 113117926 4537 + lincRNA gene predicted gene, 47524
Tssr95801 10 113272834 to 113272839 5 + TSS region transcription start site region 95801
Gm47532 10 113424184 to 113446080 21896 + lincRNA gene predicted gene, 47532
D10Mit232 10 113424790 to 113424864 74 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 232
Gm47534 10 113538023 to 113538491 468 + pseudogene predicted gene, 47534
Gm40765 10 113561570 to 113566203 4633 - lincRNA gene predicted gene, 40765
Gm40810 10 113730050 to 113730302 252 - pseudogene predicted gene, 40810
Gm47538 10 113731749 to 113732183 434 + pseudogene predicted gene, 47538
D10Mit294 10 113781251 to 113781453 202 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 294
Gm38333 10 113996647 to 113997250 603 + unclassified gene predicted gene, 38333
Gm48104 10 114095727 to 114098357 2630 + unclassified gene predicted gene, 48104
Gm31058 10 114112124 to 114119213 7089 + lncRNA gene predicted gene, 31058
D10Mit310 10 114177642 to 114177780 138 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-310
Tssr3357 10 114301984 to 114301987 3 - TSS region transcription start site region 3357
Gm38281 10 114350474 to 114350788 314 + unclassified gene predicted gene, 38281
Bmd25 10 114381196 to 114381325 129 QTL bone mineral density 25
D10Mit233 10 114381196 to 114381325 129 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 233
Mvb2 10 114381196 to 114381325 129 QTL modifier of vibrator 2
Vtbt10 10 114381196 to 114381325 129 QTL vertebral trabecular bone trait 10
Mvb4 10 114381196 to 114381325 129 QTL modifier of vibrator 4
Eae34 10 114381325 to 21532255 -92849070 QTL experimental allergic encephalomyelitis susceptibility 34
Trhde 10 114398821 to 114801370 402549 - protein coding gene TRH-degrading enzyme
Tssr99299 10 114419523 to 114419525 2 - TSS region transcription start site region 99299
Recrq11 10 114500000 to 123800000 9300000 QTL recombination rate in male meiosis QTL 11
Tssr99300 10 114516791 to 114516793 2 - TSS region transcription start site region 99300
D10Mit165 10 114618767 to 114619072 305 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 165
D10Mit276 10 114624283 to 114624516 233 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-276
V125Dq9 10 114700000 to 114700000 0 QTL vitamin D active form serum level QTL 9
Tssr95802 10 114737266 to 114737274 8 + TSS region transcription start site region 95802
Gm40766 10 114743356 to 114761839 18483 - lncRNA gene predicted gene, 40766
4930473D10Rik 10 114757747 to 114785104 27357 + antisense lncRNA gene RIKEN cDNA 4930473D10 gene
Tssr95803 10 114757761 to 114757789 28 + TSS region transcription start site region 95803
Cpgi2202 10 114800428 to 114802661 2233 CpG island CpG island 2202
Tssr99301 10 114802235 to 114802245 10 - TSS region transcription start site region 99301
Tssr99302 10 114802262 to 114802282 20 - TSS region transcription start site region 99302
Tssr99303 10 114802298 to 114802322 24 - TSS region transcription start site region 99303
Gm15723 10 114803519 to 114817587 14068 + antisense lncRNA gene predicted gene 15723
Gm40767 10 114828611 to 114917101 88490 - lncRNA gene predicted gene, 40767
D10Dcr11 10 114843593 to 114843688 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 11
Gm31182 10 114875888 to 114882522 6634 + lincRNA gene predicted gene, 31182
Gm25319 10 114910711 to 114911035 324 - unclassified non-coding RNA gene predicted gene, 25319
D10Mit136 10 114922739 to 114922883 144 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 136
T2dm1sa 10 114922739 to 114922883 144 QTL type 2 diabetes mellitus 1 in SMXA RI mice
Gm31267 10 114947892 to 114952007 4115 + lincRNA gene predicted gene, 31267
D10Mit121 10 114984922 to 114985120 198 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 121
Gm22070 10 114991541 to 114991647 106 + snRNA gene predicted gene, 22070
D10Mit266 10 115002991 to 115003084 93 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 266
Tph2 10 115078641 to 115185022 106381 - protein coding gene tryptophan hydroxylase 2
Tssr99304 10 115185015 to 115185029 14 - TSS region transcription start site region 99304
Tbc1d15 10 115197872 to 115251467 53595 - protein coding gene TBC1 domain family, member 15
Tssr99305 10 115222691 to 115222702 11 - TSS region transcription start site region 99305
Tssr99306 10 115222704 to 115222712 8 - TSS region transcription start site region 99306
Tssr99307 10 115250506 to 115250517 11 - TSS region transcription start site region 99307
Tssr99308 10 115250531 to 115250540 9 - TSS region transcription start site region 99308
Cpgi2203 10 115250941 to 115251741 800 CpG island CpG island 2203
Tssr3358 10 115251377 to 115251389 12 - TSS region transcription start site region 3358
Tssr99309 10 115251407 to 115251464 57 - TSS region transcription start site region 99309
Tssr95804 10 115251640 to 115251669 29 + TSS region transcription start site region 95804
Gm22794 10 115257624 to 115257929 305 - unclassified non-coding RNA gene predicted gene, 22794
Tssr95805 10 115269945 to 115269951 6 + TSS region transcription start site region 95805
Gm8942 10 115269978 to 115270377 399 + pseudogene predicted gene 8942
Tssr99310 10 115287974 to 115287985 11 - TSS region transcription start site region 99310
Tssr99311 10 115287991 to 115288001 10 - TSS region transcription start site region 99311
Tssr99312 10 115288022 to 115288033 11 - TSS region transcription start site region 99312
Tssr99313 10 115288048 to 115288131 83 - TSS region transcription start site region 99313
Tssr99314 10 115288141 to 115288156 15 - TSS region transcription start site region 99314
Tssr99315 10 115288324 to 115288334 10 - TSS region transcription start site region 99315
Rab21 10 115289862 to 115315899 26037 - protein coding gene RAB21, member RAS oncogene family
Tssr99316 10 115289932 to 115289937 5 - TSS region transcription start site region 99316
Tssr99317 10 115290281 to 115290324 43 - TSS region transcription start site region 99317
Cpgi2204 10 115314814 to 115316113 1299 CpG island CpG island 2204
Tssr99318 10 115314875 to 115314887 12 - TSS region transcription start site region 99318
Tssr99319 10 115314909 to 115314930 21 - TSS region transcription start site region 99319
Tssr95806 10 115315031 to 115315054 23 + TSS region transcription start site region 95806
Tssr95807 10 115315083 to 115315094 11 + TSS region transcription start site region 95807
Tssr99320 10 115315507 to 115315522 15 - TSS region transcription start site region 99320
Tssr99321 10 115315546 to 115315615 69 - TSS region transcription start site region 99321
Tssr99322 10 115315617 to 115315624 7 - TSS region transcription start site region 99322
Tssr95808 10 115315640 to 115315670 30 + TSS region transcription start site region 95808
Gm10752 10 115315646 to 115316374 728 + unclassified gene predicted gene 10752
Tssr95809 10 115315672 to 115315694 22 + TSS region transcription start site region 95809
Tssr99323 10 115332508 to 115332553 45 - TSS region transcription start site region 99323
D10Mit34 10 115333565 to 115333711 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 34
D10Mit33 10 115333612 to 115333711 99 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 33
Tmem19 10 115340739 to 115362524 21785 - protein coding gene transmembrane protein 19
Gm19006 10 115354633 to 115355399 766 - pseudogene predicted gene, 19006
Tssr95810 10 115358761 to 115358795 34 + TSS region transcription start site region 95810
Tssr99324 10 115361870 to 115361876 6 - TSS region transcription start site region 99324
Cpgi2205 10 115362072 to 115362635 563 CpG island CpG island 2205
Tssr99325 10 115362152 to 115362163 11 - TSS region transcription start site region 99325
Tssr99326 10 115362177 to 115362184 7 - TSS region transcription start site region 99326
Tssr99327 10 115362191 to 115362255 64 - TSS region transcription start site region 99327
Tssr99328 10 115362475 to 115362497 22 - TSS region transcription start site region 99328
Tssr99329 10 115362503 to 115362528 25 - TSS region transcription start site region 99329
Tssr95811 10 115362551 to 115362570 19 + TSS region transcription start site region 95811
Tssr95812 10 115362574 to 115362592 18 + TSS region transcription start site region 95812
Thap2 10 115369966 to 115384435 14469 - protein coding gene THAP domain containing, apoptosis associated protein 2
Gm46180 10 115375104 to 115376345 1241 - lncRNA gene predicted gene, 46180
Tssr95813 10 115383917 to 115383950 33 + TSS region transcription start site region 95813
Cpgi2206 10 115384035 to 115386007 1972 CpG island CpG island 2206
Tssr99330 10 115384326 to 115384336 10 - TSS region transcription start site region 99330
Tssr99331 10 115384337 to 115384375 38 - TSS region transcription start site region 99331
Tssr99332 10 115384388 to 115384435 47 - TSS region transcription start site region 99332
Tssr99333 10 115384476 to 115384509 33 - TSS region transcription start site region 99333
Tssr99334 10 115384516 to 115384562 46 - TSS region transcription start site region 99334
Tssr99335 10 115384751 to 115384796 45 - TSS region transcription start site region 99335
Tssr95814 10 115384921 to 115384949 28 + TSS region transcription start site region 95814
Tssr95815 10 115384951 to 115385021 70 + TSS region transcription start site region 95815
Zfc3h1 10 115384959 to 115432772 47813 + protein coding gene zinc finger, C3H1-type containing
Tssr95816 10 115385045 to 115385057 12 + TSS region transcription start site region 95816
Tssr95817 10 115388929 to 115388937 8 + TSS region transcription start site region 95817
Tssr95818 10 115393492 to 115393499 7 + TSS region transcription start site region 95818
A130012E19Rik 10 115394750 to 115397884 3134 + unclassified gene RIKEN cDNA A130012E19 gene
Tssr95819 10 115401261 to 115401268 7 + TSS region transcription start site region 95819
Tssr95820 10 115408862 to 115408874 12 + TSS region transcription start site region 95820
Tssr95821 10 115411386 to 115411392 6 + TSS region transcription start site region 95821
Tssr95822 10 115422333 to 115422338 5 + TSS region transcription start site region 95822
Tssr95823 10 115427319 to 115427332 13 + TSS region transcription start site region 95823
Tssr95824 10 115430881 to 115430905 24 + TSS region transcription start site region 95824
Tssr95825 10 115430906 to 115430921 15 + TSS region transcription start site region 95825
Tssr95826 10 115430937 to 115430946 9 + TSS region transcription start site region 95826
Tssr95827 10 115431069 to 115431081 12 + TSS region transcription start site region 95827
Lgr5 10 115450314 to 115587780 137466 - protein coding gene leucine rich repeat containing G protein coupled receptor 5
Tssr95828 10 115452583 to 115452588 5 + TSS region transcription start site region 95828
Cpgi2207 10 115452715 to 115453054 339 CpG island CpG island 2207
Tssr99336 10 115505646 to 115505661 15 - TSS region transcription start site region 99336
Tssr3359 10 115556867 to 115556874 7 + TSS region transcription start site region 3359
Tssr99337 10 115569746 to 115569750 4 - TSS region transcription start site region 99337
A930009A15Rik 10 115569986 to 115582448 12462 + protein coding gene RIKEN cDNA A930009A15 gene
Tssr95829 10 115570009 to 115570035 26 + TSS region transcription start site region 95829
Tssr95830 10 115570041 to 115570055 14 + TSS region transcription start site region 95830
Cpgi2208 10 115586905 to 115588040 1135 CpG island CpG island 2208
Tssr99338 10 115587739 to 115587768 29 - TSS region transcription start site region 99338
Gm8960 10 115598984 to 115599788 804 - pseudogene predicted gene 8960
Cpgi2209 10 115664540 to 115664772 232 CpG island CpG island 2209
D10Mit100 10 115674572 to 115674687 115 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 100
Tssr3360 10 115764035 to 115764036 1 + TSS region transcription start site region 3360
Tspan8 10 115816832 to 115849893 33061 + protein coding gene tetraspanin 8
Tssr95831 10 115817130 to 115817141 11 + TSS region transcription start site region 95831
Tssr3361 10 115817179 to 115817188 9 + TSS region transcription start site region 3361
Tssr95832 10 115817247 to 115817323 76 + TSS region transcription start site region 95832
Tssr95833 10 115817327 to 115817342 15 + TSS region transcription start site region 95833
Tssr95834 10 115817356 to 115817369 13 + TSS region transcription start site region 95834
Tssr95835 10 115817441 to 115817454 13 + TSS region transcription start site region 95835
Tssr95836 10 115817460 to 115817489 29 + TSS region transcription start site region 95836
Tssr95837 10 115817499 to 115817514 15 + TSS region transcription start site region 95837
Tssr95838 10 115817524 to 115817533 9 + TSS region transcription start site region 95838
Tssr95839 10 115833039 to 115833042 3 + TSS region transcription start site region 95839
Tssr95840 10 115846317 to 115846329 12 + TSS region transcription start site region 95840
4930422I22Rik 10 115849800 to 115869091 19291 - antisense lncRNA gene RIKEN cDNA 4930422I22 gene
Ptprr 10 116018213 to 116274932 256719 + protein coding gene protein tyrosine phosphatase, receptor type, R
Tssr95841 10 116018352 to 116018421 69 + TSS region transcription start site region 95841
Cpgi2210 10 116018364 to 116018793 429 CpG island CpG island 2210
Tssr95842 10 116018426 to 116018440 14 + TSS region transcription start site region 95842
Tssr95843 10 116018444 to 116018454 10 + TSS region transcription start site region 95843
Tssr99339 10 116098640 to 116098648 8 - TSS region transcription start site region 99339
Taf7l2 10 116111664 to 116113917 2253 - protein coding gene Taf7l2
Cpgi2211 10 116113312 to 116114405 1093 CpG island CpG island 2211
Tssr99340 10 116113874 to 116113880 6 - TSS region transcription start site region 99340
Tssr99341 10 116113889 to 116113933 44 - TSS region transcription start site region 99341
Tssr99342 10 116113934 to 116113941 7 - TSS region transcription start site region 99342
Tssr99343 10 116113944 to 116113949 5 - TSS region transcription start site region 99343
Tssr99344 10 116113952 to 116113957 5 - TSS region transcription start site region 99344
Tssr99345 10 116114241 to 116114263 22 - TSS region transcription start site region 99345
Tssr99346 10 116114264 to 116114279 15 - TSS region transcription start site region 99346
Tssr99347 10 116114283 to 116114299 16 - TSS region transcription start site region 99347
Tssr95844 10 116143881 to 116143902 21 + TSS region transcription start site region 95844
Tssr95845 10 116143910 to 116143922 12 + TSS region transcription start site region 95845
Tssr95846 10 116143942 to 116143952 10 + TSS region transcription start site region 95846
Tssr99348 10 116176962 to 116176968 6 - TSS region transcription start site region 99348
Tssr95847 10 116177217 to 116177243 26 + TSS region transcription start site region 95847
Tssr95848 10 116177393 to 116177417 24 + TSS region transcription start site region 95848
Tssr3362 10 116177423 to 116177434 11 + TSS region transcription start site region 3362