Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:112165050-115295302

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Caps2 10 112163621 to 112216555 52934 + protein coding gene calcyphosphine 2
Gm47419 10 112213787 to 112231141 17354 - antisense lncRNA gene predicted gene, 47419
Tssr95789 10 112227562 to 112227564 2 + TSS region transcription start site region 95789
Tssr99290 10 112231093 to 112231102 9 - TSS region transcription start site region 99290
Tssr95790 10 112269778 to 112269788 10 + TSS region transcription start site region 95790
Tssr95791 10 112269935 to 112269955 20 + TSS region transcription start site region 95791
Tssr95792 10 112270009 to 112270029 20 + TSS region transcription start site region 95792
Tssr95793 10 112270034 to 112270067 33 + TSS region transcription start site region 95793
Cpgi2198 10 112270045 to 112270544 499 CpG island CpG island 2198
Tssr95794 10 112270093 to 112270145 52 + TSS region transcription start site region 95794
Tssr95795 10 112270256 to 112270267 11 + TSS region transcription start site region 95795
Tssr95796 10 112270297 to 112270333 36 + TSS region transcription start site region 95796
Kcnc2 10 112271121 to 112467024 195903 + protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 2
Tssr3353 10 112271590 to 112271601 11 + TSS region transcription start site region 3353
Cpgi2199 10 112271620 to 112272356 736 CpG island CpG island 2199
Tssr95797 10 112271658 to 112271689 31 + TSS region transcription start site region 95797
Tssr99291 10 112271954 to 112271964 10 - TSS region transcription start site region 99291
Tssr3354 10 112399754 to 112399761 7 + TSS region transcription start site region 3354
D10Mit71 10 112476625 to 112476765 140 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 71
Gm40764 10 112657774 to 112660341 2567 - lncRNA gene predicted gene, 40764
Gm47492 10 112691579 to 112691881 302 + pseudogene predicted gene, 47492
Tssr95798 10 112726913 to 112726927 14 + TSS region transcription start site region 95798
1700010J16Rik 10 112726926 to 112785599 58673 + lincRNA gene RIKEN cDNA 1700010J16 gene
Cpgi2200 10 112785733 to 112785998 265 CpG island CpG island 2200
Tssr3355 10 112837704 to 112837714 10 + TSS region transcription start site region 3355
Tssr95799 10 112837717 to 112837732 15 + TSS region transcription start site region 95799
Tssr3356 10 112837748 to 112837755 7 + TSS region transcription start site region 3356
Gm3942 10 112837752 to 112845385 7633 + lincRNA gene predicted gene 3942
D10Mit13 10 112861843 to 112861972 129 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 13
Atxn7l3b 10 112925430 to 112929001 3571 - protein coding gene ataxin 7-like 3B
Cpgi2201 10 112928329 to 112929184 855 CpG island CpG island 2201
Tssr99292 10 112928403 to 112928416 13 - TSS region transcription start site region 99292
Gm26596 10 112928507 to 112931147 2640 + protein coding gene predicted gene, 26596
Tssr99293 10 112928827 to 112928845 18 - TSS region transcription start site region 99293
Tssr99294 10 112928850 to 112928876 26 - TSS region transcription start site region 99294
Tssr99295 10 112928884 to 112928901 17 - TSS region transcription start site region 99295
Tssr99296 10 112928907 to 112928927 20 - TSS region transcription start site region 99296
Tssr99297 10 112928949 to 112928973 24 - TSS region transcription start site region 99297
Tssr99298 10 112928974 to 112929014 40 - TSS region transcription start site region 99298
Tssr95800 10 112931421 to 112931426 5 + TSS region transcription start site region 95800
Gm22507 10 112931424 to 112931583 159 + snRNA gene predicted gene, 22507
Gm47519 10 112960188 to 112961790 1602 + unclassified gene predicted gene, 47519
Gm47522 10 113025501 to 113028222 2721 + unclassified gene predicted gene, 47522
Gm47524 10 113113389 to 113117926 4537 + lincRNA gene predicted gene, 47524
Tssr95801 10 113272834 to 113272839 5 + TSS region transcription start site region 95801
Gm47532 10 113424184 to 113446080 21896 + lincRNA gene predicted gene, 47532
D10Mit232 10 113424790 to 113424864 74 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 232
Gm47534 10 113538023 to 113538491 468 + pseudogene predicted gene, 47534
Gm40765 10 113561570 to 113566203 4633 - lincRNA gene predicted gene, 40765
Gm40810 10 113730050 to 113730302 252 - pseudogene predicted gene, 40810
Gm47538 10 113731749 to 113732183 434 + pseudogene predicted gene, 47538
D10Mit294 10 113781251 to 113781453 202 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 294
Gm38333 10 113996647 to 113997250 603 + unclassified gene predicted gene, 38333
Gm48104 10 114095727 to 114098357 2630 + unclassified gene predicted gene, 48104
Gm31058 10 114112124 to 114119213 7089 + lncRNA gene predicted gene, 31058
D10Mit310 10 114177642 to 114177780 138 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-310
Tssr3357 10 114301984 to 114301987 3 - TSS region transcription start site region 3357
Gm38281 10 114350474 to 114350788 314 + unclassified gene predicted gene, 38281
Bmd25 10 114381196 to 114381325 129 QTL bone mineral density 25
Vtbt10 10 114381196 to 114381325 129 QTL vertebral trabecular bone trait 10
D10Mit233 10 114381196 to 114381325 129 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 233
Mvb4 10 114381196 to 114381325 129 QTL modifier of vibrator 4
Mvb2 10 114381196 to 114381325 129 QTL modifier of vibrator 2
Eae34 10 114381325 to 21532255 -92849070 QTL experimental allergic encephalomyelitis susceptibility 34
Trhde 10 114398821 to 114801370 402549 - protein coding gene TRH-degrading enzyme
Tssr99299 10 114419523 to 114419525 2 - TSS region transcription start site region 99299
Recrq11 10 114500000 to 123800000 9300000 QTL recombination rate in male meiosis QTL 11
Tssr99300 10 114516791 to 114516793 2 - TSS region transcription start site region 99300
D10Mit165 10 114618767 to 114619072 305 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 165
D10Mit276 10 114624283 to 114624516 233 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-276
V125Dq9 10 114700000 to 114700000 0 QTL vitamin D active form serum level QTL 9
Tssr95802 10 114737266 to 114737274 8 + TSS region transcription start site region 95802
Gm40766 10 114743356 to 114761839 18483 - lncRNA gene predicted gene, 40766
4930473D10Rik 10 114757747 to 114785104 27357 + antisense lncRNA gene RIKEN cDNA 4930473D10 gene
Tssr95803 10 114757761 to 114757789 28 + TSS region transcription start site region 95803
Cpgi2202 10 114800428 to 114802661 2233 CpG island CpG island 2202
Tssr99301 10 114802235 to 114802245 10 - TSS region transcription start site region 99301
Tssr99302 10 114802262 to 114802282 20 - TSS region transcription start site region 99302
Tssr99303 10 114802298 to 114802322 24 - TSS region transcription start site region 99303
Gm15723 10 114803519 to 114817587 14068 + antisense lncRNA gene predicted gene 15723
Gm40767 10 114828611 to 114917101 88490 - lncRNA gene predicted gene, 40767
D10Dcr11 10 114843593 to 114843688 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 11
Gm31182 10 114875888 to 114882522 6634 + lincRNA gene predicted gene, 31182
Gm25319 10 114910711 to 114911035 324 - unclassified non-coding RNA gene predicted gene, 25319
D10Mit136 10 114922739 to 114922883 144 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 136
T2dm1sa 10 114922739 to 114922883 144 QTL type 2 diabetes mellitus 1 in SMXA RI mice
Gm31267 10 114947892 to 114952007 4115 + lincRNA gene predicted gene, 31267
D10Mit121 10 114984922 to 114985120 198 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 121
Gm22070 10 114991541 to 114991647 106 + snRNA gene predicted gene, 22070
D10Mit266 10 115002991 to 115003084 93 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 266
Tph2 10 115078641 to 115185022 106381 - protein coding gene tryptophan hydroxylase 2
Tssr99304 10 115185015 to 115185029 14 - TSS region transcription start site region 99304
Tbc1d15 10 115197872 to 115251467 53595 - protein coding gene TBC1 domain family, member 15
Tssr99305 10 115222691 to 115222702 11 - TSS region transcription start site region 99305
Tssr99306 10 115222704 to 115222712 8 - TSS region transcription start site region 99306
Tssr99307 10 115250506 to 115250517 11 - TSS region transcription start site region 99307
Tssr99308 10 115250531 to 115250540 9 - TSS region transcription start site region 99308
Cpgi2203 10 115250941 to 115251741 800 CpG island CpG island 2203
Tssr3358 10 115251377 to 115251389 12 - TSS region transcription start site region 3358
Tssr99309 10 115251407 to 115251464 57 - TSS region transcription start site region 99309
Tssr95804 10 115251640 to 115251669 29 + TSS region transcription start site region 95804
Gm22794 10 115257624 to 115257929 305 - unclassified non-coding RNA gene predicted gene, 22794
Tssr95805 10 115269945 to 115269951 6 + TSS region transcription start site region 95805
Gm8942 10 115269978 to 115270377 399 + pseudogene predicted gene 8942
Tssr99310 10 115287974 to 115287985 11 - TSS region transcription start site region 99310
Tssr99311 10 115287991 to 115288001 10 - TSS region transcription start site region 99311
Tssr99312 10 115288022 to 115288033 11 - TSS region transcription start site region 99312
Tssr99313 10 115288048 to 115288131 83 - TSS region transcription start site region 99313
Tssr99314 10 115288141 to 115288156 15 - TSS region transcription start site region 99314
Tssr99315 10 115288324 to 115288334 10 - TSS region transcription start site region 99315
Rab21 10 115289862 to 115315899 26037 - protein coding gene RAB21, member RAS oncogene family
Tssr99316 10 115289932 to 115289937 5 - TSS region transcription start site region 99316
Tssr99317 10 115290281 to 115290324 43 - TSS region transcription start site region 99317