Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:111988403-113868416

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Krr1 10 111972695 to 111988430 15735 + protein coding gene KRR1, small subunit (SSU) processome component, homolog (yeast)
Glipr1 10 111985448 to 112002621 17173 - protein coding gene GLI pathogenesis-related 1 (glioma)
Tssr99272 10 111993527 to 111993539 12 - TSS region transcription start site region 99272
Tssr99273 10 111993586 to 111993605 19 - TSS region transcription start site region 99273
Tssr95780 10 111993833 to 111993841 8 + TSS region transcription start site region 95780
Tssr99274 10 111995554 to 111995562 8 - TSS region transcription start site region 99274
Tssr99275 10 111995867 to 111995878 11 - TSS region transcription start site region 99275
Tssr99276 10 111995891 to 111995902 11 - TSS region transcription start site region 99276
Tssr99277 10 111995908 to 111995926 18 - TSS region transcription start site region 99277
Tssr95781 10 111996140 to 111996145 5 + TSS region transcription start site region 95781
Tssr99278 10 111996632 to 111996643 11 - TSS region transcription start site region 99278
Tssr95782 10 111996759 to 111996800 41 + TSS region transcription start site region 95782
Tssr99279 10 111997099 to 111997112 13 - TSS region transcription start site region 99279
Tssr99280 10 111997119 to 111997126 7 - TSS region transcription start site region 99280
Tssr99281 10 111997129 to 111997140 11 - TSS region transcription start site region 99281
Tssr99282 10 111997148 to 111997156 8 - TSS region transcription start site region 99282
Tssr99283 10 111997166 to 111997202 36 - TSS region transcription start site region 99283
Tssr99284 10 111997204 to 111997279 75 - TSS region transcription start site region 99284
Gm46179 10 112001427 to 112024737 23310 + lncRNA gene predicted gene, 46179
Tssr95783 10 112002345 to 112002386 41 + TSS region transcription start site region 95783
Tssr95784 10 112002457 to 112002498 41 + TSS region transcription start site region 95784
Tssr99285 10 112002612 to 112002636 24 - TSS region transcription start site region 99285
Tssr99286 10 112002723 to 112002760 37 - TSS region transcription start site region 99286
Gm7269 10 112008921 to 112043972 35051 - pseudogene predicted gene 7269
Tssr95785 10 112060183 to 112060207 24 + TSS region transcription start site region 95785
Glipr1l1 10 112060189 to 112078510 18321 + protein coding gene GLI pathogenesis-related 1 like 1
Tssr95786 10 112060210 to 112060230 20 + TSS region transcription start site region 95786
Tssr95787 10 112083334 to 112083341 7 + TSS region transcription start site region 95787
Tssr95788 10 112083345 to 112083371 26 + TSS region transcription start site region 95788
Glipr1l2 10 112083354 to 112108098 24744 + protein coding gene GLI pathogenesis-related 1 like 2
Gm6808 10 112089670 to 112090473 803 - pseudogene predicted gene 6808
Gm15914 10 112101240 to 112101548 308 - pseudogene predicted gene 15914
Gm48047 10 112132269 to 112132581 312 - pseudogene predicted gene, 48047
Glipr1l3 10 112141750 to 112160311 18561 - protein coding gene GLI pathogenesis-related 1 like 3
Tssr99287 10 112160282 to 112160303 21 - TSS region transcription start site region 99287
Tssr99288 10 112160304 to 112160313 9 - TSS region transcription start site region 99288
Tssr99289 10 112160321 to 112160330 9 - TSS region transcription start site region 99289
Caps2 10 112163621 to 112216555 52934 + protein coding gene calcyphosphine 2
Gm47419 10 112213787 to 112231141 17354 - antisense lncRNA gene predicted gene, 47419
Tssr95789 10 112227562 to 112227564 2 + TSS region transcription start site region 95789
Tssr99290 10 112231093 to 112231102 9 - TSS region transcription start site region 99290
Tssr95790 10 112269778 to 112269788 10 + TSS region transcription start site region 95790
Tssr95791 10 112269935 to 112269955 20 + TSS region transcription start site region 95791
Tssr95792 10 112270009 to 112270029 20 + TSS region transcription start site region 95792
Tssr95793 10 112270034 to 112270067 33 + TSS region transcription start site region 95793
Cpgi2198 10 112270045 to 112270544 499 CpG island CpG island 2198
Tssr95794 10 112270093 to 112270145 52 + TSS region transcription start site region 95794
Tssr95795 10 112270256 to 112270267 11 + TSS region transcription start site region 95795
Tssr95796 10 112270297 to 112270333 36 + TSS region transcription start site region 95796
Kcnc2 10 112271121 to 112467024 195903 + protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 2
Tssr3353 10 112271590 to 112271601 11 + TSS region transcription start site region 3353
Cpgi2199 10 112271620 to 112272356 736 CpG island CpG island 2199
Tssr95797 10 112271658 to 112271689 31 + TSS region transcription start site region 95797
Tssr99291 10 112271954 to 112271964 10 - TSS region transcription start site region 99291
Tssr3354 10 112399754 to 112399761 7 + TSS region transcription start site region 3354
D10Mit71 10 112476625 to 112476765 140 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 71
Gm40764 10 112657774 to 112660341 2567 - lncRNA gene predicted gene, 40764
Gm47492 10 112691579 to 112691881 302 + pseudogene predicted gene, 47492
Tssr95798 10 112726913 to 112726927 14 + TSS region transcription start site region 95798
1700010J16Rik 10 112726926 to 112785599 58673 + lincRNA gene RIKEN cDNA 1700010J16 gene
Cpgi2200 10 112785733 to 112785998 265 CpG island CpG island 2200
Tssr3355 10 112837704 to 112837714 10 + TSS region transcription start site region 3355
Tssr95799 10 112837717 to 112837732 15 + TSS region transcription start site region 95799
Tssr3356 10 112837748 to 112837755 7 + TSS region transcription start site region 3356
Gm3942 10 112837752 to 112845385 7633 + lincRNA gene predicted gene 3942
D10Mit13 10 112861843 to 112861972 129 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 13
Atxn7l3b 10 112925430 to 112929001 3571 - protein coding gene ataxin 7-like 3B
Cpgi2201 10 112928329 to 112929184 855 CpG island CpG island 2201
Tssr99292 10 112928403 to 112928416 13 - TSS region transcription start site region 99292
Gm26596 10 112928507 to 112931147 2640 + protein coding gene predicted gene, 26596
Tssr99293 10 112928827 to 112928845 18 - TSS region transcription start site region 99293
Tssr99294 10 112928850 to 112928876 26 - TSS region transcription start site region 99294
Tssr99295 10 112928884 to 112928901 17 - TSS region transcription start site region 99295
Tssr99296 10 112928907 to 112928927 20 - TSS region transcription start site region 99296
Tssr99297 10 112928949 to 112928973 24 - TSS region transcription start site region 99297
Tssr99298 10 112928974 to 112929014 40 - TSS region transcription start site region 99298
Tssr95800 10 112931421 to 112931426 5 + TSS region transcription start site region 95800
Gm22507 10 112931424 to 112931583 159 + snRNA gene predicted gene, 22507
Gm47519 10 112960188 to 112961790 1602 + unclassified gene predicted gene, 47519
Gm47522 10 113025501 to 113028222 2721 + unclassified gene predicted gene, 47522
Gm47524 10 113113389 to 113117926 4537 + lincRNA gene predicted gene, 47524
Tssr95801 10 113272834 to 113272839 5 + TSS region transcription start site region 95801
Gm47532 10 113424184 to 113446080 21896 + lincRNA gene predicted gene, 47532
D10Mit232 10 113424790 to 113424864 74 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 232
Gm47534 10 113538023 to 113538491 468 + pseudogene predicted gene, 47534
Gm40765 10 113561570 to 113566203 4633 - lincRNA gene predicted gene, 40765
Gm40810 10 113730050 to 113730302 252 - pseudogene predicted gene, 40810
Gm47538 10 113731749 to 113732183 434 + pseudogene predicted gene, 47538
D10Mit294 10 113781251 to 113781453 202 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 294