Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:111719184-115151080

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148 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30624 10 111685035 to 111731355 46320 + lincRNA gene predicted gene, 30624
Tssr95776 10 111725128 to 111725133 5 + TSS region transcription start site region 95776
D10Mit73 10 111732321 to 111732414 93 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 73
Hylaq3 10 111732321 to 118150744 6418423 QTL Hyperlocomotor activity related QTL 3
Tmevp2 10 111732414 to 92894079 -18838335 QTL Theiler's murine encephalomyelitis virus persistence 2
Tssr3352 10 111754034 to 111754037 3 - TSS region transcription start site region 3352
Gm47865 10 111757258 to 111799853 42595 - lincRNA gene predicted gene, 47865
Gm46193 10 111767778 to 111768141 363 + pseudogene predicted gene, 46193
Cpgi2196 10 111782491 to 111782742 251 CpG island CpG island 2196
Tssr99270 10 111799786 to 111799806 20 - TSS region transcription start site region 99270
Tssr99271 10 111799858 to 111799881 23 - TSS region transcription start site region 99271
Gm19005 10 111806388 to 111807229 841 - pseudogene predicted gene, 19005
Gm37189 10 111810780 to 111811077 297 + unclassified gene predicted gene, 37189
Gm47866 10 111829325 to 111829944 619 - pseudogene predicted gene, 47866
Gm20758 10 111854521 to 111874376 19855 - lincRNA gene predicted gene, 20758
Gm47880 10 111889014 to 111889818 804 + pseudogene predicted gene, 47880
Cpgi2197 10 111972562 to 111973307 745 CpG island CpG island 2197
Krr1 10 111972695 to 111988430 15735 + protein coding gene KRR1, small subunit (SSU) processome component, homolog (yeast)
Tssr95777 10 111972750 to 111972805 55 + TSS region transcription start site region 95777
Tssr95778 10 111984829 to 111984847 18 + TSS region transcription start site region 95778
Glipr1 10 111985448 to 112002621 17173 - protein coding gene GLI pathogenesis-related 1 (glioma)
Tssr95779 10 111985456 to 111985463 7 + TSS region transcription start site region 95779
Tssr99272 10 111993527 to 111993539 12 - TSS region transcription start site region 99272
Tssr99273 10 111993586 to 111993605 19 - TSS region transcription start site region 99273
Tssr95780 10 111993833 to 111993841 8 + TSS region transcription start site region 95780
Tssr99274 10 111995554 to 111995562 8 - TSS region transcription start site region 99274
Tssr99275 10 111995867 to 111995878 11 - TSS region transcription start site region 99275
Tssr99276 10 111995891 to 111995902 11 - TSS region transcription start site region 99276
Tssr99277 10 111995908 to 111995926 18 - TSS region transcription start site region 99277
Tssr95781 10 111996140 to 111996145 5 + TSS region transcription start site region 95781
Tssr99278 10 111996632 to 111996643 11 - TSS region transcription start site region 99278
Tssr95782 10 111996759 to 111996800 41 + TSS region transcription start site region 95782
Tssr99279 10 111997099 to 111997112 13 - TSS region transcription start site region 99279
Tssr99280 10 111997119 to 111997126 7 - TSS region transcription start site region 99280
Tssr99281 10 111997129 to 111997140 11 - TSS region transcription start site region 99281
Tssr99282 10 111997148 to 111997156 8 - TSS region transcription start site region 99282
Tssr99283 10 111997166 to 111997202 36 - TSS region transcription start site region 99283
Tssr99284 10 111997204 to 111997279 75 - TSS region transcription start site region 99284
Gm46179 10 112001427 to 112024737 23310 + lncRNA gene predicted gene, 46179
Tssr95783 10 112002345 to 112002386 41 + TSS region transcription start site region 95783
Tssr95784 10 112002457 to 112002498 41 + TSS region transcription start site region 95784
Tssr99285 10 112002612 to 112002636 24 - TSS region transcription start site region 99285
Tssr99286 10 112002723 to 112002760 37 - TSS region transcription start site region 99286
Gm7269 10 112008921 to 112043972 35051 - pseudogene predicted gene 7269
Tssr95785 10 112060183 to 112060207 24 + TSS region transcription start site region 95785
Glipr1l1 10 112060189 to 112078510 18321 + protein coding gene GLI pathogenesis-related 1 like 1
Tssr95786 10 112060210 to 112060230 20 + TSS region transcription start site region 95786
Tssr95787 10 112083334 to 112083341 7 + TSS region transcription start site region 95787
Tssr95788 10 112083345 to 112083371 26 + TSS region transcription start site region 95788
Glipr1l2 10 112083354 to 112108098 24744 + protein coding gene GLI pathogenesis-related 1 like 2
Gm6808 10 112089670 to 112090473 803 - pseudogene predicted gene 6808
Gm15914 10 112101240 to 112101548 308 - pseudogene predicted gene 15914
Gm48047 10 112132269 to 112132581 312 - pseudogene predicted gene, 48047
Glipr1l3 10 112141750 to 112160311 18561 - protein coding gene GLI pathogenesis-related 1 like 3
Tssr99287 10 112160282 to 112160303 21 - TSS region transcription start site region 99287
Tssr99288 10 112160304 to 112160313 9 - TSS region transcription start site region 99288
Tssr99289 10 112160321 to 112160330 9 - TSS region transcription start site region 99289
Caps2 10 112163621 to 112216555 52934 + protein coding gene calcyphosphine 2
Gm47419 10 112213787 to 112231141 17354 - antisense lncRNA gene predicted gene, 47419
Tssr95789 10 112227562 to 112227564 2 + TSS region transcription start site region 95789
Tssr99290 10 112231093 to 112231102 9 - TSS region transcription start site region 99290
Tssr95790 10 112269778 to 112269788 10 + TSS region transcription start site region 95790
Tssr95791 10 112269935 to 112269955 20 + TSS region transcription start site region 95791
Tssr95792 10 112270009 to 112270029 20 + TSS region transcription start site region 95792
Tssr95793 10 112270034 to 112270067 33 + TSS region transcription start site region 95793
Cpgi2198 10 112270045 to 112270544 499 CpG island CpG island 2198
Tssr95794 10 112270093 to 112270145 52 + TSS region transcription start site region 95794
Tssr95795 10 112270256 to 112270267 11 + TSS region transcription start site region 95795
Tssr95796 10 112270297 to 112270333 36 + TSS region transcription start site region 95796
Kcnc2 10 112271121 to 112467024 195903 + protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 2
Tssr3353 10 112271590 to 112271601 11 + TSS region transcription start site region 3353
Cpgi2199 10 112271620 to 112272356 736 CpG island CpG island 2199
Tssr95797 10 112271658 to 112271689 31 + TSS region transcription start site region 95797
Tssr99291 10 112271954 to 112271964 10 - TSS region transcription start site region 99291
Tssr3354 10 112399754 to 112399761 7 + TSS region transcription start site region 3354
D10Mit71 10 112476625 to 112476765 140 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 71
Gm40764 10 112657774 to 112660341 2567 - lncRNA gene predicted gene, 40764
Gm47492 10 112691579 to 112691881 302 + pseudogene predicted gene, 47492
Tssr95798 10 112726913 to 112726927 14 + TSS region transcription start site region 95798
1700010J16Rik 10 112726926 to 112785599 58673 + lincRNA gene RIKEN cDNA 1700010J16 gene
Cpgi2200 10 112785733 to 112785998 265 CpG island CpG island 2200
Tssr3355 10 112837704 to 112837714 10 + TSS region transcription start site region 3355
Tssr95799 10 112837717 to 112837732 15 + TSS region transcription start site region 95799
Tssr3356 10 112837748 to 112837755 7 + TSS region transcription start site region 3356
Gm3942 10 112837752 to 112845385 7633 + lincRNA gene predicted gene 3942
D10Mit13 10 112861843 to 112861972 129 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 13
Atxn7l3b 10 112925430 to 112929001 3571 - protein coding gene ataxin 7-like 3B
Cpgi2201 10 112928329 to 112929184 855 CpG island CpG island 2201
Tssr99292 10 112928403 to 112928416 13 - TSS region transcription start site region 99292
Gm26596 10 112928507 to 112931147 2640 + protein coding gene predicted gene, 26596
Tssr99293 10 112928827 to 112928845 18 - TSS region transcription start site region 99293
Tssr99294 10 112928850 to 112928876 26 - TSS region transcription start site region 99294
Tssr99295 10 112928884 to 112928901 17 - TSS region transcription start site region 99295
Tssr99296 10 112928907 to 112928927 20 - TSS region transcription start site region 99296
Tssr99297 10 112928949 to 112928973 24 - TSS region transcription start site region 99297
Tssr99298 10 112928974 to 112929014 40 - TSS region transcription start site region 99298
Tssr95800 10 112931421 to 112931426 5 + TSS region transcription start site region 95800
Gm22507 10 112931424 to 112931583 159 + snRNA gene predicted gene, 22507
Gm47519 10 112960188 to 112961790 1602 + unclassified gene predicted gene, 47519
Gm47522 10 113025501 to 113028222 2721 + unclassified gene predicted gene, 47522
Gm47524 10 113113389 to 113117926 4537 + lincRNA gene predicted gene, 47524
Tssr95801 10 113272834 to 113272839 5 + TSS region transcription start site region 95801
Gm47532 10 113424184 to 113446080 21896 + lincRNA gene predicted gene, 47532
D10Mit232 10 113424790 to 113424864 74 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 232
Gm47534 10 113538023 to 113538491 468 + pseudogene predicted gene, 47534
Gm40765 10 113561570 to 113566203 4633 - lincRNA gene predicted gene, 40765
Gm40810 10 113730050 to 113730302 252 - pseudogene predicted gene, 40810
Gm47538 10 113731749 to 113732183 434 + pseudogene predicted gene, 47538
D10Mit294 10 113781251 to 113781453 202 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 294
Gm38333 10 113996647 to 113997250 603 + unclassified gene predicted gene, 38333
Gm48104 10 114095727 to 114098357 2630 + unclassified gene predicted gene, 48104
Gm31058 10 114112124 to 114119213 7089 + lncRNA gene predicted gene, 31058
D10Mit310 10 114177642 to 114177780 138 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-310
Tssr3357 10 114301984 to 114301987 3 - TSS region transcription start site region 3357
Gm38281 10 114350474 to 114350788 314 + unclassified gene predicted gene, 38281
D10Mit233 10 114381196 to 114381325 129 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 233
Bmd25 10 114381196 to 114381325 129 QTL bone mineral density 25
Mvb4 10 114381196 to 114381325 129 QTL modifier of vibrator 4
Mvb2 10 114381196 to 114381325 129 QTL modifier of vibrator 2
Vtbt10 10 114381196 to 114381325 129 QTL vertebral trabecular bone trait 10
Eae34 10 114381325 to 21532255 -92849070 QTL experimental allergic encephalomyelitis susceptibility 34
Trhde 10 114398821 to 114801370 402549 - protein coding gene TRH-degrading enzyme
Tssr99299 10 114419523 to 114419525 2 - TSS region transcription start site region 99299
Recrq11 10 114500000 to 123800000 9300000 QTL recombination rate in male meiosis QTL 11
Tssr99300 10 114516791 to 114516793 2 - TSS region transcription start site region 99300
D10Mit165 10 114618767 to 114619072 305 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 165
D10Mit276 10 114624283 to 114624516 233 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-276
V125Dq9 10 114700000 to 114700000 0 QTL vitamin D active form serum level QTL 9
Tssr95802 10 114737266 to 114737274 8 + TSS region transcription start site region 95802
Gm40766 10 114743356 to 114761839 18483 - lncRNA gene predicted gene, 40766
4930473D10Rik 10 114757747 to 114785104 27357 + antisense lncRNA gene RIKEN cDNA 4930473D10 gene
Tssr95803 10 114757761 to 114757789 28 + TSS region transcription start site region 95803
Cpgi2202 10 114800428 to 114802661 2233 CpG island CpG island 2202
Tssr99301 10 114802235 to 114802245 10 - TSS region transcription start site region 99301
Tssr99302 10 114802262 to 114802282 20 - TSS region transcription start site region 99302
Tssr99303 10 114802298 to 114802322 24 - TSS region transcription start site region 99303
Gm15723 10 114803519 to 114817587 14068 + antisense lncRNA gene predicted gene 15723
Gm40767 10 114828611 to 114917101 88490 - lncRNA gene predicted gene, 40767
D10Dcr11 10 114843593 to 114843688 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 11
Gm31182 10 114875888 to 114882522 6634 + lincRNA gene predicted gene, 31182
Gm25319 10 114910711 to 114911035 324 - unclassified non-coding RNA gene predicted gene, 25319
D10Mit136 10 114922739 to 114922883 144 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 136
T2dm1sa 10 114922739 to 114922883 144 QTL type 2 diabetes mellitus 1 in SMXA RI mice
Gm31267 10 114947892 to 114952007 4115 + lincRNA gene predicted gene, 31267
D10Mit121 10 114984922 to 114985120 198 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 121
Gm22070 10 114991541 to 114991647 106 + snRNA gene predicted gene, 22070
D10Mit266 10 115002991 to 115003084 93 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 266
Tph2 10 115078641 to 115185022 106381 - protein coding gene tryptophan hydroxylase 2