Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:111462321-112002414

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2194 10 111472748 to 111473939 1191 CpG island CpG island 2194
Tssr95759 10 111473186 to 111473201 15 + TSS region transcription start site region 95759
Tssr95760 10 111473220 to 111473242 22 + TSS region transcription start site region 95760
Nap1l1 10 111473223 to 111498150 24927 + protein coding gene nucleosome assembly protein 1-like 1
Tssr95761 10 111473253 to 111473262 9 + TSS region transcription start site region 95761
Tssr3351 10 111473266 to 111473267 1 + TSS region transcription start site region 3351
Tssr95762 10 111473962 to 111473966 4 + TSS region transcription start site region 95762
Gm25117 10 111481493 to 111481636 143 + snoRNA gene predicted gene, 25117
D10Ertd284e 10 111484291 to 111484499 208 DNA segment DNA segment, Chr 10, ERATO Doi 284, expressed
Tssr95763 10 111485347 to 111485358 11 + TSS region transcription start site region 95763
Gm5176 10 111500788 to 111501345 557 + pseudogene predicted gene 5176
Cpgi2195 10 111506017 to 111507867 1850 CpG island CpG island 2195
Phlda1 10 111506286 to 111508645 2359 + protein coding gene pleckstrin homology like domain, family A, member 1
Tssr95764 10 111506395 to 111506419 24 + TSS region transcription start site region 95764
Tssr95765 10 111506428 to 111506435 7 + TSS region transcription start site region 95765
Tssr95766 10 111506542 to 111506563 21 + TSS region transcription start site region 95766
Gm28592 10 111506575 to 111507662 1087 - lincRNA gene predicted gene 28592
Tssr95767 10 111506939 to 111506962 23 + TSS region transcription start site region 95767
Tssr99267 10 111507316 to 111507338 22 - TSS region transcription start site region 99267
Tssr99268 10 111507373 to 111507397 24 - TSS region transcription start site region 99268
Tssr99269 10 111516962 to 111516982 20 - TSS region transcription start site region 99269
Gm40762 10 111524069 to 111529990 5921 - lncRNA gene predicted gene, 40762
Tssr95768 10 111553991 to 111554025 34 + TSS region transcription start site region 95768
Gm30193 10 111569880 to 111573862 3982 - lncRNA gene predicted gene, 30193
4933440J02Rik 10 111586719 to 111594273 7554 - lincRNA gene RIKEN cDNA 4933440J02 gene
Tssr95769 10 111595077 to 111595092 15 + TSS region transcription start site region 95769
Tssr95770 10 111595873 to 111595880 7 + TSS region transcription start site region 95770
Tssr95771 10 111595892 to 111595905 13 + TSS region transcription start site region 95771
Tssr95772 10 111595908 to 111595918 10 + TSS region transcription start site region 95772
Tssr95773 10 111595923 to 111595935 12 + TSS region transcription start site region 95773
Tssr95774 10 111595958 to 111595971 13 + TSS region transcription start site region 95774
Gm30262 10 111599177 to 111611338 12161 + lincRNA gene predicted gene, 30262
Tssr95775 10 111608603 to 111608635 32 + TSS region transcription start site region 95775
Gm40763 10 111631429 to 111636499 5070 - lncRNA gene predicted gene, 40763
Gm47864 10 111648378 to 111649812 1434 - pseudogene predicted gene, 47864
Gm30624 10 111685035 to 111731355 46320 + lincRNA gene predicted gene, 30624
Tssr95776 10 111725128 to 111725133 5 + TSS region transcription start site region 95776
Hylaq3 10 111732321 to 118150744 6418423 QTL Hyperlocomotor activity related QTL 3
D10Mit73 10 111732321 to 111732414 93 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 73
Tmevp2 10 111732414 to 92894079 -18838335 QTL Theiler's murine encephalomyelitis virus persistence 2
Tssr3352 10 111754034 to 111754037 3 - TSS region transcription start site region 3352
Gm47865 10 111757258 to 111799853 42595 - lincRNA gene predicted gene, 47865
Gm46193 10 111767778 to 111768141 363 + pseudogene predicted gene, 46193
Cpgi2196 10 111782491 to 111782742 251 CpG island CpG island 2196
Tssr99270 10 111799786 to 111799806 20 - TSS region transcription start site region 99270
Tssr99271 10 111799858 to 111799881 23 - TSS region transcription start site region 99271
Gm19005 10 111806388 to 111807229 841 - pseudogene predicted gene, 19005
Gm37189 10 111810780 to 111811077 297 + unclassified gene predicted gene, 37189
Gm47866 10 111829325 to 111829944 619 - pseudogene predicted gene, 47866
Gm20758 10 111854521 to 111874376 19855 - lincRNA gene predicted gene, 20758
Gm47880 10 111889014 to 111889818 804 + pseudogene predicted gene, 47880
Cpgi2197 10 111972562 to 111973307 745 CpG island CpG island 2197
Krr1 10 111972695 to 111988430 15735 + protein coding gene KRR1, small subunit (SSU) processome component, homolog (yeast)
Tssr95777 10 111972750 to 111972805 55 + TSS region transcription start site region 95777
Tssr95778 10 111984829 to 111984847 18 + TSS region transcription start site region 95778
Glipr1 10 111985448 to 112002621 17173 - protein coding gene GLI pathogenesis-related 1 (glioma)
Tssr95779 10 111985456 to 111985463 7 + TSS region transcription start site region 95779
Tssr99272 10 111993527 to 111993539 12 - TSS region transcription start site region 99272
Tssr99273 10 111993586 to 111993605 19 - TSS region transcription start site region 99273
Tssr95780 10 111993833 to 111993841 8 + TSS region transcription start site region 95780
Tssr99274 10 111995554 to 111995562 8 - TSS region transcription start site region 99274
Tssr99275 10 111995867 to 111995878 11 - TSS region transcription start site region 99275
Tssr99276 10 111995891 to 111995902 11 - TSS region transcription start site region 99276
Tssr99277 10 111995908 to 111995926 18 - TSS region transcription start site region 99277
Tssr95781 10 111996140 to 111996145 5 + TSS region transcription start site region 95781
Tssr99278 10 111996632 to 111996643 11 - TSS region transcription start site region 99278
Tssr95782 10 111996759 to 111996800 41 + TSS region transcription start site region 95782
Tssr99279 10 111997099 to 111997112 13 - TSS region transcription start site region 99279
Tssr99280 10 111997119 to 111997126 7 - TSS region transcription start site region 99280
Tssr99281 10 111997129 to 111997140 11 - TSS region transcription start site region 99281
Tssr99282 10 111997148 to 111997156 8 - TSS region transcription start site region 99282
Tssr99283 10 111997166 to 111997202 36 - TSS region transcription start site region 99283
Tssr99284 10 111997204 to 111997279 75 - TSS region transcription start site region 99284
Gm46179 10 112001427 to 112024737 23310 + lncRNA gene predicted gene, 46179
Tssr95783 10 112002345 to 112002386 41 + TSS region transcription start site region 95783