Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:110349869-111979882

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nav3 10 109681573 to 110455897 774324 - protein coding gene neuron navigator 3
Gm47338 10 110379508 to 110381661 2153 + unclassified gene predicted gene, 47338
Gm3877 10 110454687 to 110456212 1525 unclassified gene predicted gene 3877
Cpgi2183 10 110455068 to 110456442 1374 CpG island CpG island 2183
Tssr3349 10 110455914 to 110455921 7 - TSS region transcription start site region 3349
Tssr99252 10 110455921 to 110456008 87 - TSS region transcription start site region 99252
Tssr99253 10 110456197 to 110456213 16 - TSS region transcription start site region 99253
Tssr99254 10 110456214 to 110456244 30 - TSS region transcription start site region 99254
Gm47055 10 110480637 to 110481077 440 + pseudogene predicted gene, 47055
D10Mit150 10 110523231 to 110523344 113 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 150
9230102K24Rik 10 110600650 to 110615961 15311 + lincRNA gene RIKEN cDNA 9230102K24 gene
Insq12 10 110617486 to 125680038 15062552 QTL insulin QTL 12
Homaq2 10 110617486 to 125680038 15062552 QTL homeostatic model assessment QTL 2
Gm47058 10 110634269 to 110634803 534 - pseudogene predicted gene, 47058
Tssr95684 10 110660094 to 110660129 35 + TSS region transcription start site region 95684
Gm36751 10 110726276 to 110728586 2310 - lncRNA gene predicted gene, 36751
Cpgi2184 10 110735606 to 110735774 168 CpG island CpG island 2184
Cpgi2185 10 110744867 to 110746022 1155 CpG island CpG island 2185
Tssr95685 10 110745433 to 110745533 100 + TSS region transcription start site region 95685
E2f7 10 110745439 to 110787384 41945 + protein coding gene E2F transcription factor 7
Tssr95686 10 110793729 to 110793747 18 + TSS region transcription start site region 95686
Gm36808 10 110795310 to 110797370 2060 - lncRNA gene predicted gene, 36808
Gm23698 10 110796173 to 110796300 127 + snoRNA gene predicted gene, 23698
1700020G17Rik 10 110801174 to 110896507 95333 - antisense lncRNA gene RIKEN cDNA 1700020G17 gene
Tssr99255 10 110802604 to 110802613 9 - TSS region transcription start site region 99255
Tssr99256 10 110856680 to 110856691 11 - TSS region transcription start site region 99256
Tssr95687 10 110878093 to 110878109 16 + TSS region transcription start site region 95687
Tssr95688 10 110878126 to 110878134 8 + TSS region transcription start site region 95688
Gm22186 10 110892298 to 110892419 121 - snoRNA gene predicted gene, 22186
Tssr99257 10 110896501 to 110896539 38 - TSS region transcription start site region 99257
Tssr99258 10 110898056 to 110898061 5 - TSS region transcription start site region 99258
Gm22236 10 110904795 to 110904900 105 - snRNA gene predicted gene, 22236
Cpgi2186 10 110919542 to 110920707 1165 CpG island CpG island 2186
Tssr95689 10 110920170 to 110920188 18 + TSS region transcription start site region 95689
Csrp2 10 110920176 to 110939514 19338 + protein coding gene cysteine and glycine-rich protein 2
Cpgi2187 10 110931823 to 110932090 267 CpG island CpG island 2187
Tssr95690 10 110931991 to 110932005 14 + TSS region transcription start site region 95690
Tssr95691 10 110933884 to 110933885 1 + TSS region transcription start site region 95691
Tssr95692 10 110934291 to 110934296 5 + TSS region transcription start site region 95692
Tssr95693 10 110937797 to 110937830 33 + TSS region transcription start site region 95693
Tssr95694 10 110937916 to 110937929 13 + TSS region transcription start site region 95694
Zdhhc17 10 110941779 to 111010066 68287 - protein coding gene zinc finger, DHHC domain containing 17
Cpgi2188 10 111009159 to 111010530 1371 CpG island CpG island 2188
Tssr99259 10 111009979 to 111009984 5 - TSS region transcription start site region 99259
Tssr99260 10 111010001 to 111010025 24 - TSS region transcription start site region 99260
Tssr99261 10 111010266 to 111010273 7 - TSS region transcription start site region 99261
Tssr3350 10 111010286 to 111010289 3 - TSS region transcription start site region 3350
Gm29916 10 111074142 to 111083558 9416 - lncRNA gene predicted gene, 29916
Gm48851 10 111101578 to 111102871 1293 - pseudogene predicted gene, 48851
Cpgi2189 10 111103121 to 111103296 175 CpG island CpG island 2189
Rpl6l 10 111125851 to 111126721 870 + pseudogene ribosomal protein L6-like
Gm22101 10 111129107 to 111129209 102 - snRNA gene predicted gene, 22101
Tssr99262 10 111131891 to 111131893 2 - TSS region transcription start site region 99262
Tssr99263 10 111134641 to 111134651 10 - TSS region transcription start site region 99263
Gm8873 10 111156397 to 111157533 1136 + pseudogene predicted gene 8873
Cpgi2190 10 111156408 to 111156764 356 CpG island CpG island 2190
Tssr99264 10 111157353 to 111157392 39 - TSS region transcription start site region 99264
Tssr95695 10 111160470 to 111160494 24 + TSS region transcription start site region 95695
Cpgi2191 10 111164379 to 111165798 1419 CpG island CpG island 2191
Tssr99265 10 111164630 to 111164678 48 - TSS region transcription start site region 99265
Osbpl8 10 111164752 to 111297249 132497 + protein coding gene oxysterol binding protein-like 8
Tssr95696 10 111164755 to 111164778 23 + TSS region transcription start site region 95696
Tssr95697 10 111164794 to 111164811 17 + TSS region transcription start site region 95697
Tssr95698 10 111164822 to 111164868 46 + TSS region transcription start site region 95698
Tssr95699 10 111164869 to 111164882 13 + TSS region transcription start site region 95699
Tssr95700 10 111164887 to 111164898 11 + TSS region transcription start site region 95700
Tssr95701 10 111165763 to 111165777 14 + TSS region transcription start site region 95701
Tssr95702 10 111167195 to 111167210 15 + TSS region transcription start site region 95702
Tssr95703 10 111167591 to 111167620 29 + TSS region transcription start site region 95703
Tssr99266 10 111171379 to 111171382 3 - TSS region transcription start site region 99266
D10Mit143 10 111173518 to 111173758 240 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 143
Tssr95704 10 111174273 to 111174314 41 + TSS region transcription start site region 95704
D10Ertd709e 10 111174588 to 111174836 248 DNA segment DNA segment, Chr 10, ERATO Doi 709, expressed
Tssr95705 10 111174801 to 111174820 19 + TSS region transcription start site region 95705
Tssr95706 10 111174873 to 111174887 14 + TSS region transcription start site region 95706
Tssr95707 10 111176441 to 111176446 5 + TSS region transcription start site region 95707
Tssr95708 10 111176970 to 111177013 43 + TSS region transcription start site region 95708
Tssr95709 10 111178428 to 111178442 14 + TSS region transcription start site region 95709
Tssr95710 10 111178490 to 111178512 22 + TSS region transcription start site region 95710
Gm17849 10 111179952 to 111180793 841 + pseudogene predicted gene, 17849
Tssr95711 10 111186690 to 111186715 25 + TSS region transcription start site region 95711
Tssr95712 10 111190315 to 111190324 9 + TSS region transcription start site region 95712
Tssr95713 10 111190375 to 111190395 20 + TSS region transcription start site region 95713
Tssr95714 10 111204836 to 111204846 10 + TSS region transcription start site region 95714
Tssr95715 10 111211563 to 111211606 43 + TSS region transcription start site region 95715
Tssr95716 10 111226880 to 111226887 7 + TSS region transcription start site region 95716
Tssr95717 10 111226891 to 111226898 7 + TSS region transcription start site region 95717
Tssr95718 10 111229385 to 111229417 32 + TSS region transcription start site region 95718
Tssr95719 10 111229440 to 111229465 25 + TSS region transcription start site region 95719
Tssr95720 10 111232165 to 111232177 12 + TSS region transcription start site region 95720
Tssr95721 10 111232403 to 111232414 11 + TSS region transcription start site region 95721
Tssr95722 10 111232420 to 111232456 36 + TSS region transcription start site region 95722
Tssr95723 10 111233540 to 111233556 16 + TSS region transcription start site region 95723
Tssr95724 10 111233703 to 111233716 13 + TSS region transcription start site region 95724
Tssr95725 10 111239406 to 111239429 23 + TSS region transcription start site region 95725
Tssr95726 10 111244292 to 111244324 32 + TSS region transcription start site region 95726
Tssr95727 10 111247832 to 111247850 18 + TSS region transcription start site region 95727
Tssr95728 10 111247856 to 111247892 36 + TSS region transcription start site region 95728
Tssr95729 10 111253595 to 111253609 14 + TSS region transcription start site region 95729
Tssr95730 10 111254212 to 111254217 5 + TSS region transcription start site region 95730
Tssr95731 10 111260142 to 111260148 6 + TSS region transcription start site region 95731
Tssr95732 10 111270560 to 111270589 29 + TSS region transcription start site region 95732
Tssr95733 10 111273121 to 111273139 18 + TSS region transcription start site region 95733
Tssr95734 10 111273886 to 111273912 26 + TSS region transcription start site region 95734
Tssr95735 10 111278298 to 111278302 4 + TSS region transcription start site region 95735
Tssr95736 10 111278722 to 111278763 41 + TSS region transcription start site region 95736
Tssr95737 10 111280311 to 111280332 21 + TSS region transcription start site region 95737
Tssr95738 10 111280342 to 111280358 16 + TSS region transcription start site region 95738
Tssr95739 10 111282135 to 111282146 11 + TSS region transcription start site region 95739
Tssr95740 10 111282149 to 111282174 25 + TSS region transcription start site region 95740
Tssr95741 10 111284335 to 111284354 19 + TSS region transcription start site region 95741
Tssr95742 10 111284379 to 111284401 22 + TSS region transcription start site region 95742
Tssr95743 10 111286108 to 111286142 34 + TSS region transcription start site region 95743
Tssr95744 10 111289836 to 111289855 19 + TSS region transcription start site region 95744
Tssr95745 10 111291521 to 111291546 25 + TSS region transcription start site region 95745
Tssr95746 10 111293270 to 111293281 11 + TSS region transcription start site region 95746
Tssr95747 10 111293593 to 111293614 21 + TSS region transcription start site region 95747
Tssr95748 10 111293618 to 111293632 14 + TSS region transcription start site region 95748
Tssr95749 10 111293648 to 111293674 26 + TSS region transcription start site region 95749
Tssr95750 10 111295054 to 111295062 8 + TSS region transcription start site region 95750
Tssr95751 10 111295117 to 111295123 6 + TSS region transcription start site region 95751
Tssr95752 10 111296057 to 111296064 7 + TSS region transcription start site region 95752
Tssr95753 10 111296202 to 111296210 8 + TSS region transcription start site region 95753
Tssr95754 10 111296302 to 111296314 12 + TSS region transcription start site region 95754
Tssr95755 10 111296432 to 111296450 18 + TSS region transcription start site region 95755
Tssr95756 10 111296815 to 111296838 23 + TSS region transcription start site region 95756
Cpgi2192 10 111298312 to 111298962 650 CpG island CpG island 2192
Bbs10 10 111298679 to 111301727 3048 + protein coding gene Bardet-Biedl syndrome 10 (human)
Tssr95757 10 111298682 to 111298689 7 + TSS region transcription start site region 95757
Tssr95758 10 111298699 to 111298721 22 + TSS region transcription start site region 95758
Gm40760 10 111303436 to 111314070 10634 + lncRNA gene predicted gene, 40760
Gm30095 10 111312790 to 111314345 1555 - lncRNA gene predicted gene, 30095
Cpgi2193 10 111336107 to 111336309 202 CpG island CpG island 2193
Gm40761 10 111337124 to 111347185 10061 + lincRNA gene predicted gene, 40761
Gm30145 10 111366704 to 111378465 11761 - lncRNA gene predicted gene, 30145
Cpgi2194 10 111472748 to 111473939 1191 CpG island CpG island 2194
Tssr95759 10 111473186 to 111473201 15 + TSS region transcription start site region 95759
Tssr95760 10 111473220 to 111473242 22 + TSS region transcription start site region 95760
Nap1l1 10 111473223 to 111498150 24927 + protein coding gene nucleosome assembly protein 1-like 1
Tssr95761 10 111473253 to 111473262 9 + TSS region transcription start site region 95761
Tssr3351 10 111473266 to 111473267 1 + TSS region transcription start site region 3351
Tssr95762 10 111473962 to 111473966 4 + TSS region transcription start site region 95762
Gm25117 10 111481493 to 111481636 143 + snoRNA gene predicted gene, 25117
D10Ertd284e 10 111484291 to 111484499 208 DNA segment DNA segment, Chr 10, ERATO Doi 284, expressed
Tssr95763 10 111485347 to 111485358 11 + TSS region transcription start site region 95763
Gm5176 10 111500788 to 111501345 557 + pseudogene predicted gene 5176
Cpgi2195 10 111506017 to 111507867 1850 CpG island CpG island 2195
Phlda1 10 111506286 to 111508645 2359 + protein coding gene pleckstrin homology like domain, family A, member 1
Tssr95764 10 111506395 to 111506419 24 + TSS region transcription start site region 95764
Tssr95765 10 111506428 to 111506435 7 + TSS region transcription start site region 95765
Tssr95766 10 111506542 to 111506563 21 + TSS region transcription start site region 95766
Gm28592 10 111506575 to 111507662 1087 - lincRNA gene predicted gene 28592
Tssr95767 10 111506939 to 111506962 23 + TSS region transcription start site region 95767
Tssr99267 10 111507316 to 111507338 22 - TSS region transcription start site region 99267
Tssr99268 10 111507373 to 111507397 24 - TSS region transcription start site region 99268
Tssr99269 10 111516962 to 111516982 20 - TSS region transcription start site region 99269
Gm40762 10 111524069 to 111529990 5921 - lncRNA gene predicted gene, 40762
Tssr95768 10 111553991 to 111554025 34 + TSS region transcription start site region 95768
Gm30193 10 111569880 to 111573862 3982 - lncRNA gene predicted gene, 30193
4933440J02Rik 10 111586719 to 111594273 7554 - lincRNA gene RIKEN cDNA 4933440J02 gene
Tssr95769 10 111595077 to 111595092 15 + TSS region transcription start site region 95769
Tssr95770 10 111595873 to 111595880 7 + TSS region transcription start site region 95770
Tssr95771 10 111595892 to 111595905 13 + TSS region transcription start site region 95771
Tssr95772 10 111595908 to 111595918 10 + TSS region transcription start site region 95772
Tssr95773 10 111595923 to 111595935 12 + TSS region transcription start site region 95773
Tssr95774 10 111595958 to 111595971 13 + TSS region transcription start site region 95774
Gm30262 10 111599177 to 111611338 12161 + lincRNA gene predicted gene, 30262
Tssr95775 10 111608603 to 111608635 32 + TSS region transcription start site region 95775
Gm40763 10 111631429 to 111636499 5070 - lncRNA gene predicted gene, 40763
Gm47864 10 111648378 to 111649812 1434 - pseudogene predicted gene, 47864
Gm30624 10 111685035 to 111731355 46320 + lincRNA gene predicted gene, 30624
Tssr95776 10 111725128 to 111725133 5 + TSS region transcription start site region 95776
Hylaq3 10 111732321 to 118150744 6418423 QTL Hyperlocomotor activity related QTL 3
D10Mit73 10 111732321 to 111732414 93 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 73
Tmevp2 10 111732414 to 92894079 -18838335 QTL Theiler's murine encephalomyelitis virus persistence 2
Tssr3352 10 111754034 to 111754037 3 - TSS region transcription start site region 3352
Gm47865 10 111757258 to 111799853 42595 - lincRNA gene predicted gene, 47865
Gm46193 10 111767778 to 111768141 363 + pseudogene predicted gene, 46193
Cpgi2196 10 111782491 to 111782742 251 CpG island CpG island 2196
Tssr99270 10 111799786 to 111799806 20 - TSS region transcription start site region 99270
Tssr99271 10 111799858 to 111799881 23 - TSS region transcription start site region 99271
Gm19005 10 111806388 to 111807229 841 - pseudogene predicted gene, 19005
Gm37189 10 111810780 to 111811077 297 + unclassified gene predicted gene, 37189
Gm47866 10 111829325 to 111829944 619 - pseudogene predicted gene, 47866
Gm20758 10 111854521 to 111874376 19855 - lincRNA gene predicted gene, 20758
Gm47880 10 111889014 to 111889818 804 + pseudogene predicted gene, 47880
Cpgi2197 10 111972562 to 111973307 745 CpG island CpG island 2197
Krr1 10 111972695 to 111988430 15735 + protein coding gene KRR1, small subunit (SSU) processome component, homolog (yeast)
Tssr95777 10 111972750 to 111972805 55 + TSS region transcription start site region 95777