Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:110285439-111247384

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nav3 10 109681573 to 110455897 774324 - protein coding gene neuron navigator 3
Tssr99251 10 110337101 to 110337104 3 - TSS region transcription start site region 99251
Cpgi2182 10 110347983 to 110348141 158 CpG island CpG island 2182
Gm47338 10 110379508 to 110381661 2153 + unclassified gene predicted gene, 47338
Gm3877 10 110454687 to 110456212 1525 unclassified gene predicted gene 3877
Cpgi2183 10 110455068 to 110456442 1374 CpG island CpG island 2183
Tssr3349 10 110455914 to 110455921 7 - TSS region transcription start site region 3349
Tssr99252 10 110455921 to 110456008 87 - TSS region transcription start site region 99252
Tssr99253 10 110456197 to 110456213 16 - TSS region transcription start site region 99253
Tssr99254 10 110456214 to 110456244 30 - TSS region transcription start site region 99254
Gm47055 10 110480637 to 110481077 440 + pseudogene predicted gene, 47055
D10Mit150 10 110523231 to 110523344 113 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 150
9230102K24Rik 10 110600650 to 110615961 15311 + lincRNA gene RIKEN cDNA 9230102K24 gene
Homaq2 10 110617486 to 125680038 15062552 QTL homeostatic model assessment QTL 2
Insq12 10 110617486 to 125680038 15062552 QTL insulin QTL 12
Gm47058 10 110634269 to 110634803 534 - pseudogene predicted gene, 47058
Tssr95684 10 110660094 to 110660129 35 + TSS region transcription start site region 95684
Gm36751 10 110726276 to 110728586 2310 - lncRNA gene predicted gene, 36751
Cpgi2184 10 110735606 to 110735774 168 CpG island CpG island 2184
Cpgi2185 10 110744867 to 110746022 1155 CpG island CpG island 2185
Tssr95685 10 110745433 to 110745533 100 + TSS region transcription start site region 95685
E2f7 10 110745439 to 110787384 41945 + protein coding gene E2F transcription factor 7
Tssr95686 10 110793729 to 110793747 18 + TSS region transcription start site region 95686
Gm36808 10 110795310 to 110797370 2060 - lncRNA gene predicted gene, 36808
Gm23698 10 110796173 to 110796300 127 + snoRNA gene predicted gene, 23698
1700020G17Rik 10 110801174 to 110896507 95333 - antisense lncRNA gene RIKEN cDNA 1700020G17 gene
Tssr99255 10 110802604 to 110802613 9 - TSS region transcription start site region 99255
Tssr99256 10 110856680 to 110856691 11 - TSS region transcription start site region 99256
Tssr95687 10 110878093 to 110878109 16 + TSS region transcription start site region 95687
Tssr95688 10 110878126 to 110878134 8 + TSS region transcription start site region 95688
Gm22186 10 110892298 to 110892419 121 - snoRNA gene predicted gene, 22186
Tssr99257 10 110896501 to 110896539 38 - TSS region transcription start site region 99257
Tssr99258 10 110898056 to 110898061 5 - TSS region transcription start site region 99258
Gm22236 10 110904795 to 110904900 105 - snRNA gene predicted gene, 22236
Cpgi2186 10 110919542 to 110920707 1165 CpG island CpG island 2186
Tssr95689 10 110920170 to 110920188 18 + TSS region transcription start site region 95689
Csrp2 10 110920176 to 110939514 19338 + protein coding gene cysteine and glycine-rich protein 2
Cpgi2187 10 110931823 to 110932090 267 CpG island CpG island 2187
Tssr95690 10 110931991 to 110932005 14 + TSS region transcription start site region 95690
Tssr95691 10 110933884 to 110933885 1 + TSS region transcription start site region 95691
Tssr95692 10 110934291 to 110934296 5 + TSS region transcription start site region 95692
Tssr95693 10 110937797 to 110937830 33 + TSS region transcription start site region 95693
Tssr95694 10 110937916 to 110937929 13 + TSS region transcription start site region 95694
Zdhhc17 10 110941779 to 111010066 68287 - protein coding gene zinc finger, DHHC domain containing 17
Cpgi2188 10 111009159 to 111010530 1371 CpG island CpG island 2188
Tssr99259 10 111009979 to 111009984 5 - TSS region transcription start site region 99259
Tssr99260 10 111010001 to 111010025 24 - TSS region transcription start site region 99260
Tssr99261 10 111010266 to 111010273 7 - TSS region transcription start site region 99261
Tssr3350 10 111010286 to 111010289 3 - TSS region transcription start site region 3350
Gm29916 10 111074142 to 111083558 9416 - lncRNA gene predicted gene, 29916
Gm48851 10 111101578 to 111102871 1293 - pseudogene predicted gene, 48851
Cpgi2189 10 111103121 to 111103296 175 CpG island CpG island 2189
Rpl6l 10 111125851 to 111126721 870 + pseudogene ribosomal protein L6-like
Gm22101 10 111129107 to 111129209 102 - snRNA gene predicted gene, 22101
Tssr99262 10 111131891 to 111131893 2 - TSS region transcription start site region 99262
Tssr99263 10 111134641 to 111134651 10 - TSS region transcription start site region 99263
Gm8873 10 111156397 to 111157533 1136 + pseudogene predicted gene 8873
Cpgi2190 10 111156408 to 111156764 356 CpG island CpG island 2190
Tssr99264 10 111157353 to 111157392 39 - TSS region transcription start site region 99264
Tssr95695 10 111160470 to 111160494 24 + TSS region transcription start site region 95695
Cpgi2191 10 111164379 to 111165798 1419 CpG island CpG island 2191
Tssr99265 10 111164630 to 111164678 48 - TSS region transcription start site region 99265
Osbpl8 10 111164752 to 111297249 132497 + protein coding gene oxysterol binding protein-like 8
Tssr95696 10 111164755 to 111164778 23 + TSS region transcription start site region 95696
Tssr95697 10 111164794 to 111164811 17 + TSS region transcription start site region 95697
Tssr95698 10 111164822 to 111164868 46 + TSS region transcription start site region 95698
Tssr95699 10 111164869 to 111164882 13 + TSS region transcription start site region 95699
Tssr95700 10 111164887 to 111164898 11 + TSS region transcription start site region 95700
Tssr95701 10 111165763 to 111165777 14 + TSS region transcription start site region 95701
Tssr95702 10 111167195 to 111167210 15 + TSS region transcription start site region 95702
Tssr95703 10 111167591 to 111167620 29 + TSS region transcription start site region 95703
Tssr99266 10 111171379 to 111171382 3 - TSS region transcription start site region 99266
D10Mit143 10 111173518 to 111173758 240 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 143
Tssr95704 10 111174273 to 111174314 41 + TSS region transcription start site region 95704
D10Ertd709e 10 111174588 to 111174836 248 DNA segment DNA segment, Chr 10, ERATO Doi 709, expressed
Tssr95705 10 111174801 to 111174820 19 + TSS region transcription start site region 95705
Tssr95706 10 111174873 to 111174887 14 + TSS region transcription start site region 95706
Tssr95707 10 111176441 to 111176446 5 + TSS region transcription start site region 95707
Tssr95708 10 111176970 to 111177013 43 + TSS region transcription start site region 95708
Tssr95709 10 111178428 to 111178442 14 + TSS region transcription start site region 95709
Tssr95710 10 111178490 to 111178512 22 + TSS region transcription start site region 95710
Gm17849 10 111179952 to 111180793 841 + pseudogene predicted gene, 17849
Tssr95711 10 111186690 to 111186715 25 + TSS region transcription start site region 95711
Tssr95712 10 111190315 to 111190324 9 + TSS region transcription start site region 95712
Tssr95713 10 111190375 to 111190395 20 + TSS region transcription start site region 95713
Tssr95714 10 111204836 to 111204846 10 + TSS region transcription start site region 95714
Tssr95715 10 111211563 to 111211606 43 + TSS region transcription start site region 95715
Tssr95716 10 111226880 to 111226887 7 + TSS region transcription start site region 95716
Tssr95717 10 111226891 to 111226898 7 + TSS region transcription start site region 95717
Tssr95718 10 111229385 to 111229417 32 + TSS region transcription start site region 95718
Tssr95719 10 111229440 to 111229465 25 + TSS region transcription start site region 95719
Tssr95720 10 111232165 to 111232177 12 + TSS region transcription start site region 95720
Tssr95721 10 111232403 to 111232414 11 + TSS region transcription start site region 95721
Tssr95722 10 111232420 to 111232456 36 + TSS region transcription start site region 95722
Tssr95723 10 111233540 to 111233556 16 + TSS region transcription start site region 95723
Tssr95724 10 111233703 to 111233716 13 + TSS region transcription start site region 95724
Tssr95725 10 111239406 to 111239429 23 + TSS region transcription start site region 95725
Tssr95726 10 111244292 to 111244324 32 + TSS region transcription start site region 95726